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46,514 result(s) for "Chen, Z."
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Genomic and epigenetic insights into the molecular bases of heterosis
Key Points Century-old genetic models are limited in their ability to explain the molecular bases of heterosis. Transcriptomic, proteomic, metabolic and epigenomic studies provide new insights into parental genomic interactions, leading to regulatory and network changes and heterosis. Genetic and epigenetic reprogramming of individual genes, regulatory factors and their associated networks in hybrids promotes growth, stress tolerance and fitness. Key regulators can be manipulated using biochemical and transgenic approaches to alter biological networks and heterosis. Although heterosis is most extensively studied in plants, the principles uncovered in plants are likely to apply more broadly across organisms. Heterosis, also known as hybrid vigour, is an intriguing phenomenon that has particularly important implications for agriculture. The molecular basis of this vigour is poorly understood, but progress is being made through the use of genomic, transcriptomic and epigenomic approaches. Heterosis, also known as hybrid vigour, is widespread in plants and animals, but the molecular bases for this phenomenon remain elusive. Recent studies in hybrids and allopolyploids using transcriptomic, proteomic, metabolomic, epigenomic and systems biology approaches have provided new insights. Emerging genomic and epigenetic perspectives suggest that heterosis arises from allelic interactions between parental genomes, leading to altered programming of genes that promote the growth, stress tolerance and fitness of hybrids. For example, epigenetic modifications of key regulatory genes in hybrids and allopolyploids can alter complex regulatory networks of physiology and metabolism, thus modulating biomass and leading to heterosis. The conceptual advances could help to improve plant and animal productivity through the manipulation of heterosis.
Mental health problems and correlates among 746 217 college students during the coronavirus disease 2019 outbreak in China
Coronavirus disease 2019 (COVID-19) pandemic is a major public health concern all over the world. Little is known about the impact of COVID-19 pandemic on mental health in the general population. This study aimed to assess the mental health problems and associated factors among a large sample of college students during the COVID-19 outbreak in China. This cross-sectional and nation-wide survey of college students was conducted in China from 3 to 10 February 2020. A self-administered questionnaire was used to assess psychosocial factors, COVID-19 epidemic related factors and mental health problems. Acute stress, depressive and anxiety symptoms were measured by the Chinese versions of the impact of event scale-6, Patient Health Questionnaire-9 and Generalized Anxiety Disorder-7, respectively. Univariate and hierarchical logistic regression analyses were performed to examine factors associated with mental health problems. Among 821 218 students who participated in the survey, 746 217 (90.9%) were included for the analysis. In total, 414 604 (55.6%) of the students were female. About 45% of the participants had mental health problems. The prevalence rates of probable acute stress, depressive and anxiety symptoms were 34.9%, 21.1% and 11.0%, respectively. COVID-19 epidemic factors that were associated with increased risk of mental health problems were having relatives or friends being infected (adjusted odds ratio = 1.72-2.33). Students with exposure to media coverage of the COVID-19 ≥3 h/day were 2.13 times more likely than students with media exposure <1 h/day to have acute stress symptoms. Individuals with low perceived social support were 4.84-5.98 times more likely than individuals with high perceived social support to have anxiety and depressive symptoms. In addition, senior year and prior mental health problems were also significantly associated with anxiety or/and depressive symptoms. In this large-scale survey of college students in China, acute stress, anxiety and depressive symptoms are prevalent during the COVID-19 pandemic. Multiple epidemic and psychosocial factors, such as family members being infected, massive media exposure, low social support, senior year and prior mental health problems were associated with increased risk of mental health problems. Psychosocial support and mental health services should be provided to those students at risk.
Strain-tunable magnetism at oxide domain walls
Ferromagnetism is observed at ferroelastic domain walls in strontium titanate and its heterostructures with other oxides. Applying strain can reverse the magnetism. This suggests the possibility of device engineering using domain walls.
Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons
Background Polyploidy is a pervasive evolutionary feature of all flowering plants and some animals, leading to genetic and epigenetic changes that affect gene expression and morphology. DNA methylation changes can produce meiotically stable epialleles, which are transmissible through selection and breeding. However, the relationship between DNA methylation and polyploid plant domestication remains elusive. Results We report comprehensive epigenomic and functional analyses, including ~12 million differentially methylated cytosines in domesticated allotetraploid cottons and their tetraploid and diploid relatives. Methylated genes evolve faster than unmethylated genes; DNA methylation changes between homoeologous loci are associated with homoeolog-expression bias in the allotetraploids. Significantly, methylation changes induced in the interspecific hybrids are largely maintained in the allotetraploids. Among 519 differentially methylated genes identified between wild and cultivated cottons, some contribute to domestication traits, including flowering time and seed dormancy. CONSTANS ( CO ) and CO - LIKE ( COL ) genes regulate photoperiodicity in Arabidopsis. COL2 is an epiallele in allotetraploid cottons. COL2A is hypermethylated and silenced, while COL2D is repressed in wild cottons but highly expressed due to methylation loss in all domesticated cottons tested. Inhibiting DNA methylation activates COL2 expression, and repressing COL2 in cultivated cotton delays flowering. Conclusions We uncover epigenomic signatures of domestication traits during cotton evolution. Demethylation of COL2 increases its expression, inducing photoperiodic flowering, which could have contributed to the suitability of cotton for cultivation worldwide. These resources should facilitate epigenetic engineering, breeding, and improvement of polyploid crops.
Classification of time-reversal-invariant crystals with gauge structures
A peculiar feature of quantum states is that they may embody so-called projective representations of symmetries rather than ordinary representations. Projective representations of space groups-the defining symmetry of crystals-remain largely unexplored. Despite recent advances in artificial crystals, whose intrinsic gauge structures necessarily require a projective description, a unified theory is yet to be established. Here, we establish such a unified theory by exhaustively classifying and representing all 458 projective symmetry algebras of time-reversal-invariant crystals from 17 wallpaper groups in two dimensions-189 of which are algebraically non-equivalent. We discover three physical signatures resulting from projective symmetry algebras, including the shift of high-symmetry momenta, an enforced nontrivial Zak phase, and a spinless eight-fold nodal point. Our work offers a theoretical foundation for the field of artificial crystals and opens the door to a wealth of topological states and phenomena beyond the existing paradigms. Projective representations of crystal symmetries are indispensable for understanding artificial crystals. Here, authors establish a unified theory of projective crystal symmetries with time-reversal invariance, and construct models for all 458 projective symmetry algebras for the 17 two-dimensional wallpaper groups.
Interactive roles of chromatin regulation and circadian clock function in plants
Circadian rhythms in transcription ultimately result in oscillations of key biological processes. Understanding how transcriptional rhythms are generated in plants provides an opportunity for fine-tuning growth, development, and responses to the environment. Here, we present a succinct description of the plant circadian clock, briefly reviewing a number of recent studies but mostly emphasizing the components and mechanisms connecting chromatin remodeling with transcriptional regulation by the clock. The possibility that intergenomic interactions govern hybrid vigor through epigenetic changes at clock loci and the function of epialleles controlling clock output traits during crop domestication are also discussed.
Brillouin Klein bottle from artificial gauge fields
A Brillouin zone is the unit for the momentum space of a crystal. It is topologically a torus, and distinguishing whether a set of wave functions over the Brillouin torus can be smoothly deformed to another leads to the classification of various topological states of matter. Here, we show that under Z 2 gauge fields, i.e., hopping amplitudes with phases ±1, the fundamental domain of momentum space can assume the topology of a Klein bottle. This drastic change of the Brillouin zone theory is due to the projective symmetry algebra enforced by the gauge field. Remarkably, the non-orientability of the Brillouin Klein bottle corresponds to the topological classification by a Z 2 invariant, in contrast to the Chern number valued in Z for the usual Brillouin torus. The result is a novel Klein bottle insulator featuring topological modes at two edges related by a nonlocal twist, radically distinct from all previous topological insulators. Our prediction can be readily achieved in various artificial crystals, and the discovery opens a new direction to explore topological physics by gauge-field-modified fundamental structures of physics. Topological states are exploited based on crystalline symmetry, but under artificial gauge fields, symmetries may satisfy projective algebras, which remains less studied. Here, the authors reveal that projective symmetry algebra leads to momentum-space nonsymmorphic symmetry, resulting in new topological states over a momentum-space Klein bottle.
Kinetic control of tunable multi-state switching in ferroelectric thin films
Deterministic creation of multiple ferroelectric states with intermediate values of polarization remains challenging due to the inherent bi-stability of ferroelectric switching. Here we show the ability to select any desired intermediate polarization value via control of the switching pathway in (111)-oriented PbZr 0.2 Ti 0.8 O 3 films. Such switching phenomena are driven by kinetic control of the volume fraction of two geometrically different domain structures which are generated by two distinct switching pathways: one direct, bipolar-like switching and another multi-step switching process with the formation of a thermodynamically-stable intermediate twinning structure. Such control of switching pathways is enabled by the competition between elastic and electrostatic energies which favors different types of ferroelastic switching that can occur. Overall, our work demonstrates an alternative approach that transcends the inherent bi-stability of ferroelectrics to create non-volatile, deterministic, and repeatedly obtainable multi-state polarization without compromising other important properties, and holds promise for non-volatile multi-state functional applications. The use of ferroeletric materials for multi-state device applications is still challenging. Here, the authors present a mechanism to stabilize non-volatile polarization states by populating volume fractions of two domain structures in PbZr 0.2 Ti 0.8 O 3 via kinetic control of switching pathways.
Extended Bayesian information criteria for model selection with large model spaces
The ordinary Bayesian information criterion is too liberal for model selection when the model space is large. In this paper, we re-examine the Bayesian paradigm for model selection and propose an extended family of Bayesian information criteria, which take into account both the number of unknown parameters and the complexity of the model space. Their consistency is established, in particular allowing the number of covariates to increase to infinity with the sample size. Their performance in various situations is evaluated by simulation studies. It is demonstrated that the extended Bayesian information criteria incur a small loss in the positive selection rate but tightly control the false discovery rate, a desirable property in many applications. The extended Bayesian information criteria are extremely useful for variable selection in problems with a moderate sample size but with a huge number of covariates, especially in genome-wide association studies, which are now an active area in genetics research.