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result(s) for
"Chepizhko Oleksandr"
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Random motion of a circle microswimmer in a random environment
2020
We simulate the dynamics of a single circle microswimmer exploring a disordered array of fixed obstacles. The interplay of two different types of randomness, quenched disorder and stochastic noise, is investigated to unravel their impact on the transport properties. We compute lines of isodiffusivity as a function of the rotational diffusion coefficient and the obstacle density. We find that increasing noise or disorder tends to amplify diffusion, yet for large randomness the competition leads to a strong suppression of transport. We rationalize both the suppression and amplification of transport by comparing the relevant time scales of the free motion to the mean period between collisions with obstacles.
Journal Article
Cell–cell adhesion and 3D matrix confinement determine jamming transitions in breast cancer invasion
by
Zapperi Stefano
,
Starruß Jörn
,
Chepizhko Oleksandr
in
Adherens junctions
,
Adhesion
,
Boundaries
2020
Plasticity of cancer invasion and metastasis depends on the ability of cancer cells to switch between collective and single-cell dissemination, controlled by cadherin-mediated cell–cell junctions. In clinical samples, E-cadherin-expressing and -deficient tumours both invade collectively and metastasize equally, implicating additional mechanisms controlling cell–cell cooperation and individualization. Here, using spatially defined organotypic culture, intravital microscopy of mammary tumours in mice and in silico modelling, we identify cell density regulation by three-dimensional tissue boundaries to physically control collective movement irrespective of the composition and stability of cell–cell junctions. Deregulation of adherens junctions by downregulation of E-cadherin and p120-catenin resulted in a transition from coordinated to uncoordinated collective movement along extracellular boundaries, whereas single-cell escape depended on locally free tissue space. These results indicate that cadherins and extracellular matrix confinement cooperate to determine unjamming transitions and stepwise epithelial fluidization towards, ultimately, cell individualization.Ilina et al. investigate the balance between cell adhesion and matrix density on patterns of collective breast cancer cell invasion using three-dimensional models of the extracellular matrix, in vivo imaging and in silico modelling
Journal Article
Bursts of activity in collective cell migration
by
Mastrapasqua, Eleonora
,
Leggio, Livio
,
Sugni, Michela
in
Animals
,
Antigens, CD - metabolism
,
Applied Physical Sciences
2016
Dense monolayers of living cells display intriguing relaxation dynamics, reminiscent of soft and glassy materials close to the jamming transition, and migrate collectively when space is available, as in wound healing or in cancer invasion. Here we show that collective cell migration occurs in bursts that are similar to those recorded in the propagation of cracks, fluid fronts in porous media, and ferromagnetic domain walls. In analogy with these systems, the distribution of activity bursts displays scaling laws that are universal in different cell types and for cells moving on different substrates. The main features of the invasion dynamics are quantitatively captured by a model of interacting active particles moving in a disordered landscape. Our results illustrate that collective motion of living cells is analogous to the corresponding dynamics in driven, but inanimate, systems.
Journal Article
Emergent vortices in populations of colloidal rollers
by
Chikkadi, Vijayakumar
,
Das, Debasish
,
Savoie, Charles
in
639/301/923/916
,
639/766/1960
,
639/766/25
2015
Coherent vortical motion has been reported in a wide variety of populations including living organisms (bacteria, fishes, human crowds) and synthetic active matter (shaken grains, mixtures of biopolymers), yet a unified description of the formation and structure of this pattern remains lacking. Here we report the self-organization of motile colloids into a macroscopic steadily rotating vortex. Combining physical experiments and numerical simulations, we elucidate this collective behaviour. We demonstrate that the emergent-vortex structure lives on the verge of a phase separation, and single out the very constituents responsible for this state of polar active matter. Building on this observation, we establish a continuum theory and lay out a strong foundation for the description of vortical collective motion in a broad class of motile populations constrained by geometrical boundaries.
Confined populations of interacting motile particles often display collective motion in the form of large-scale vortices, such as fish groups and bacteria colonies. Bricard
et al.
study a model system with self-propelled colloidal rollers and identify the constituents responsible for emergent vortices.
Journal Article
Metamaterial architecture from a self-shaping carnivorous plant
by
Caselli, Alessandro
,
Schiavoni, Mario
,
Zapperi, Stefano
in
Applied Physical Sciences
,
Architecture
,
Biochemistry
2019
As meticulously observed and recorded by Darwin, the leaves of the carnivorous plant Drosera capensis L. slowly fold around insects trapped on their sticky surface in order to ensure their digestion. While the biochemical signaling driving leaf closure has been associated with plant growth hormones, how mechanical forces actuate the process is still unknown. Here, we combine experimental tests of leaf mechanics with quantitative measurements of the leaf microstructure and biochemistry to demonstrate that the closure mechanism is programmed into the cellular architecture of D. capensis leaves, which converts a homogeneous biochemical signal into an asymmetric response. Inspired by the leaf closure mechanism, we devise and test a mechanical metamaterial, which curls under homogeneous mechanical stimuli. This kind of metamaterial could find possible applications as a component in soft robotics and provides an example of bioinspired design.
Journal Article
Resonant diffusion of a gravitactic circle swimmer
2023
We investigate the dynamics of a single chiral active particle subject to an external torque due to the presence of a gravitational field. Our computer simulations reveal an arbitrarily strong increase of the long-time diffusivity of the gravitactic agent when the external torque approaches the intrinsic angular drift. We provide analytic expressions for the mean-square displacement in terms of eigenfunctions and eigenvalues of the noisy-driven-pendulum problem. The pronounced maximum in the diffusivity is then rationalized by the vanishing of the lowest eigenvalues of the Fokker-Planck equation for the angular motion as the rotational diffusion decreases and the underlying classical bifurcation is approached. A simple harmonic-oscillator picture for the barrier-dominated motion provides a quantitative description for the onset of the resonance while its range of validity is determined by the crossover to a critical-fluctuation-dominated regime.
MicroRNA-222 Regulates Melanoma Plasticity
2020
Melanoma is one of the most aggressive and highly resistant tumors. Cell plasticity in melanoma is one of the main culprits behind its metastatic capabilities. The detailed molecular mechanisms controlling melanoma plasticity are still not completely understood. Here we combine mathematical models of phenotypic switching with experiments on IgR39 human melanoma cells to identify possible key targets to impair phenotypic switching. Our mathematical model shows that a cancer stem cell subpopulation within the tumor prevents phenotypic switching of the other cancer cells. Experiments reveal that hsa-mir-222 is a key factor enabling this process. Our results shed new light on melanoma plasticity, providing a potential target and guidance for therapeutic studies.
Journal Article
Intermediate scattering function of a gravitactic circle swimmer
by
Rusch, Regina
,
Franosch, Thomas
,
Chepizhko, Oleksandr
in
Eigenvalues
,
Eigenvectors
,
Fokker-Planck equation
2024
We analyze gravitaxis of a Brownian circle swimmer by deriving and characterizing analytically the experimentally measurable intermediate scattering function (ISF). To solve the associated Fokker-Planck equation we use a spectral-theory approach and find formal expressions in terms of eigenfunctions and eigenvalues of the overdamped-noisy-driven-pendulum problem. We further perform a Taylor series of the ISF in the wavevector to read off the cumulants up to the fourth order. We focus on the skewness and kurtosis analyzed for four observation directions in the 2D-plane. Validating our findings involves conducting Langevin-dynamics simulations and interpreting the results using a harmonic approximation. The skewness and kurtosis are amplified as the orienting torque approaches the intrinsic angular drift of the circle swimmer from above, highlighting deviations from Gaussian behavior. Transforming the ISF to the comoving frame, again a measurable quantity, reveals gravitactic effects and diverse behaviors spanning from diffusive motion at low wavenumbers to circular motion at intermediate and directed motion at higher wavenumbers.
Random motion of a circle microswimmer in a random environment
2020
We simulate the dynamics of a single circle microswimmer exploring a disordered array of fixed obstacles. The interplay of two different types of randomness, quenched disorder and stochastic noise, is investigated to unravel their impact on the transport properties. We compute lines of isodiffusivity as a function of the rotational diffusion coefficient and the obstacle density. We find that increasing noise or disorder tends to amplify diffusion, yet for large randomness the competition leads to a strong suppression of transport. We rationalize both the suppression and amplification of transport by comparing the relevant time scales of the free motion to the mean period between collisions with obstacles.
Ideal circle microswimmers in crowded media
2020
Microswimmers are exposed in nature to crowded environments and their transport properties depend in a subtle way on the interaction with obstacles. Here, we investigate a model for a single ideal circle swimmer exploring a two-dimensional disordered array of impenetrable obstacles. The microswimmer moves on circular orbits in the freely accessible space and follows the surface of an obstacle for a certain time upon collision. Depending on the obstacle density and the radius of the circular orbits, the microswimmer displays either long-range transport or is localized in a finite region. We show that there are transitions from two localized states to a diffusive state each driven by an underlying static percolation transition. We determine the non-equilibrium state diagram and calculate the mean-square displacements and diffusivities by computer simulations. Close to the transition lines transport becomes subdiffusive which is rationalized as a dynamic critical phenomenon.