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26 result(s) for "Chu, Mengdi"
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Two new species of genus Tripyloides (Nematoda, Enoplida, Tripyloididae) from the Chinese sea area
Two new free-living marine nematode species of genus Tripyloides were discovered in intertidal sediments along Rudong coast of the Yellow Sea and on Qi′ao Island of the South China Sea, respectively. They are described here as Tripyloides conicus sp. nov. and Tripyloides boucheri sp. nov. T. conicus sp. nov. is characterized by outer labial setae two-segments, amphideal fovea circular, buccal cavity with four chambers and with a distinct tooth at the bottom, spicules slender and straight, gubernaculum kidney-like with two lateral denticles at distal end, tail sexual dimorphism (elongated conical in males, conico-cylindrical in females). T. boucheri sp. nov. is characterized by body size small, outer labial setae stout, two-segments, amphidial fovea small, circular, narrow conical buccal cavity without distinct tooth, male with papilliform precloacal supplements, spicules slender, gubernaculum with two lateral denticles at distal end, tail conico-cylindrical and not swollen terminally. An updated dichotomous key for fifteen species of the genus is also given.
Cyclic peptide CRRETAWAC attenuates fibronectin‐induced cytokine secretion of human airway smooth muscle cells by inhibiting FAK and p38 MAPK
α5β1 integrin is highly expressed in airway smooth muscle cells and mediate the adhesion of airway smooth muscle cells to fibronectin to regulate airway remodelling in asthma. This study aimed to investigate the effects of synthetic cyclic peptide *CRRETAWAC* on fibronectin‐induced cytokine secretion of airway smooth muscle cells and the underlying mechanism. Human airway smooth muscle cells were isolated and treated with fibronectin, IL‐13, *CRRETAWAC* peptide, α5β1 integrin‐blocking antibody, FAK inhibitor or p38 MAPK inhibitor. The transcription and secretion of eotaxin‐1 and RANTES were detected by real‐time PCR and ELISA, respectively. The phosphorylation of FAK and MAPKs including p38, ERK1/2 and JNK1/2 was detected by Western blot analysis. The transcription and secretion of eotaxin‐1 and RANTES increased in airway smooth muscle cells cultured in fibronectin‐coated plates. However, α5β1 integrin‐blocking antibody, *CRRETAWAC* peptide, FAK inhibitor or p38 MAPK inhibitor significantly reduced mRNA levels and the secretion of eotaxin‐1 and RANTES in airway smooth muscle cells cultured in fibronectin‐coated plates. In addition, the phosphorylation of FAK and p38 MAPK was significantly increased in airway smooth muscle cells cultured in fibronectin‐coated plates compared to the cells cultured in uncoated plates and was significantly reduced in airway smooth muscle cells treated with *CRRETAWAC* peptide. Fibronectin induces cytokine synthesis and secretion of airway smooth muscle cells. Peptide *CRRETAWAC* antagonizes fibronectin‐induced cytokine synthesis and secretion of airway smooth muscle cells via the inhibition of FAK and p38 MAPK, and is a potential agent for the therapy of asthma.
Work with AI and Work for AI: Autonomous Vehicle Safety Drivers' Lived Experiences
The development of Autonomous Vehicle (AV) has created a novel job, the safety driver, recruited from experienced drivers to supervise and operate AV in numerous driving missions. Safety drivers usually work with non-perfect AV in high-risk real-world traffic environments for road testing tasks. However, this group of workers is under-explored in the HCI community. To fill this gap, we conducted semi-structured interviews with 26 safety drivers. Our results present how safety drivers cope with defective algorithms and shape and calibrate their perceptions while working with AV. We found that, as front-line workers, safety drivers are forced to take risks accumulated from the AV industry upstream and are also confronting restricted self-development in working for AV development. We contribute the first empirical evidence of the lived experience of safety drivers, the first passengers in the development of AV, and also the grassroots workers for AV, which can shed light on future human-AI interaction research.
Side-by-Side vs Face-to-Face: Evaluating Colocated Collaboration via a Transparent Wall-sized Display
Traditional wall-sized displays mostly only support side-by-side co-located collaboration, while transparent displays naturally support face-to-face interaction. Many previous works assume transparent displays support collaboration. Yet it is unknown how exactly its afforded face-to-face interaction can support loose or close collaboration, especially compared to the side-by-side configuration offered by traditional large displays. In this paper, we used an established experimental task that operationalizes different collaboration coupling and layout locality, to compare pairs of participants collaborating side-by-side versus face-to-face in each collaborative situation. We compared quantitative measures and collected interview and observation data to further illustrate and explain our observed user behavior patterns. The results showed that the unique face-to-face collaboration brought by transparent display can result in more efficient task performance, different territorial behavior, and both positive and negative collaborative factors. Our findings provided empirical understanding about the collaborative experience supported by wall-sized transparent displays and shed light on its future design.
Annotating Covert Hazardous Driving Scenarios Online: Utilizing Drivers' Electroencephalography (EEG) Signals
As autonomous driving systems prevail, it is becoming increasingly critical that the systems learn from databases containing fine-grained driving scenarios. Most databases currently available are human-annotated; they are expensive, time-consuming, and subject to behavioral biases. In this paper, we provide initial evidence supporting a novel technique utilizing drivers' electroencephalography (EEG) signals to implicitly label hazardous driving scenarios while passively viewing recordings of real-road driving, thus sparing the need for manual annotation and avoiding human annotators' behavioral biases during explicit report. We conducted an EEG experiment using real-life and animated recordings of driving scenarios and asked participants to report danger explicitly whenever necessary. Behavioral results showed the participants tended to report danger only when overt hazards (e.g., a vehicle or a pedestrian appearing unexpectedly from behind an occlusion) were in view. By contrast, their EEG signals were enhanced at the sight of both an overt hazard and a covert hazard (e.g., an occlusion signalling possible appearance of a vehicle or a pedestrian from behind). Thus, EEG signals were more sensitive to driving hazards than explicit reports. Further, the Time-Series AI (TSAI) successfully classified EEG signals corresponding to overt and covert hazards. We discuss future steps necessary to materialize the technique in real life.
Evaluation of Pedestrian Safety in a High-Fidelity Simulation Environment Framework
Pedestrians' safety is a crucial factor in assessing autonomous driving scenarios. However, pedestrian safety evaluation is rarely considered by existing autonomous driving simulation platforms. This paper proposes a pedestrian safety evaluation method for autonomous driving, in which not only the collision events but also the conflict events together with the characteristics of pedestrians are fully considered. Moreover, to apply the pedestrian safety evaluation system, we construct a high-fidelity simulation framework embedded with pedestrian safety-critical characteristics. We demonstrate our simulation framework and pedestrian safety evaluation with a comparative experiment with two kinds of autonomous driving perception algorithms -- single-vehicle perception and vehicle-to-infrastructure (V2I) cooperative perception. The results show that our framework can evaluate different autonomous driving algorithms with detailed and quantitative pedestrian safety indexes. To this end, the proposed simulation method and framework can be used to access different autonomous driving algorithms and evaluate pedestrians' safety performance in future autonomous driving simulations, which can inspire more pedestrian-friendly autonomous driving algorithms.
What Makes a Fantastic Passenger-Car Driver in Urban Contexts?
The accurate evaluation of the quality of driving behavior is crucial for optimizing and implementing autonomous driving technology in practice. However, there is no comprehensive understanding of good driving behaviors currently. In this paper, we sought to understand driving behaviors from the perspectives of both drivers and passengers. We invited 10 expert drivers and 14 novice drivers to complete a 5.7-kilometer urban road driving task. After the experiments, we conducted semi-structured interviews with 24 drivers and 48 of their passengers (two passengers per driver). Through the analysis of interview data, we found passengers' assessing logic of driving behaviors, divers' considerations and efforts to achieve good driving, and gaps between these perspectives. Our research provided insights into a systematic evaluation of autonomous driving and the design implications for future autonomous vehicles.
MTH1 protects platelet mitochondria from oxidative damage and regulates platelet function and thrombosis
Human MutT Homolog 1 (MTH1) is a nucleotide pool sanitization enzyme that hydrolyzes oxidized nucleotides to prevent their mis-incorporation into DNA under oxidative stress. Expression and functional roles of MTH1 in platelets are not known. Here, we show MTH1 expression in platelets and its deficiency impairs hemostasis and arterial/venous thrombosis in vivo. MTH1 deficiency reduced platelet aggregation, phosphatidylserine exposure and calcium mobilization induced by thrombin but not by collagen-related peptide (CRP) along with decreased mitochondrial ATP production. Thrombin but not CRP induced Ca 2+ -dependent mitochondria reactive oxygen species generation. Mechanistically, MTH1 deficiency caused mitochondrial DNA oxidative damage and reduced the expression of cytochrome c oxidase 1. Furthermore, MTH1 exerts a similar role in human platelet function. Our study suggests that MTH1 exerts a protective function against oxidative stress in platelets and indicates that MTH1 could be a potential therapeutic target for the prevention of thrombotic diseases. MTH1 hydrolyzes oxidized nucleotides to prevent their mis-incorporation into DNA under oxidative stress. Here, the authors show that MTH1 is expressed in platelets and its deficiency increases mitochondrial DNA oxidative damage, impairs platelet function and hemostasis.
A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions
The 5′ untranslated region (UTR), a regulatory region at the beginning of a messenger RNA (mRNA) molecule, plays a crucial role in regulating the translation process and affects the protein expression level. Language models have showcased their effectiveness in decoding the functions of protein and genome sequences. Here, we introduce a language model for 5′ UTR, which we refer to as the UTR-LM. The UTR-LM is pretrained on endogenous 5′ UTRs from multiple species and is further augmented with supervised information including secondary structure and minimum free energy. We fine-tuned the UTR-LM in a variety of downstream tasks. The model outperformed the best known benchmark by up to 5% for predicting the mean ribosome loading, and by up to 8% for predicting the translation efficiency and the mRNA expression level. The model was also applied to identifying unannotated internal ribosome entry sites within the untranslated region and improved the area under the precision–recall curve from 0.37 to 0.52 compared to the best baseline. Further, we designed a library of 211 new 5′ UTRs with high predicted values of translation efficiency and evaluated them via a wet-laboratory assay. Experiment results confirmed that our top designs achieved a 32.5% increase in protein production level relative to well-established 5′ UTRs optimized for therapeutics. The 5′ untranslated region is a critical regulatory region of mRNA, influencing gene expression regulation and translation. Chu, Yu and colleagues develop a language model for analysing untranslated regions of mRNA. The model, pretrained on data from diverse species, enhances the prediction of mRNA translation activities and has implications for new vaccine design.
Fasting-mimicking diet-enriched Bifidobacterium pseudolongum suppresses colorectal cancer by inducing memory CD8+ T cells
BackgroundFasting-mimicking diet (FMD) boosts the antitumour immune response in patients with colorectal cancer (CRC). The gut microbiota is a key host immunity regulator, affecting physiological homeostasis and disease pathogenesis.ObjectiveWe aimed to investigate how FMD protects against CRC via gut microbiota modulation.DesignWe assessed probiotic species enrichment in FMD-treated CRC mice using faecal metagenomic sequencing. The candidate species were verified in antibiotic-treated conventional and germ-free mouse models. Immune landscape alterations were evaluated using single-cell RNA sequencing and multicolour flow cytometry. The microbiota-derived antitumour metabolites were identified using metabolomic profiling.ResultsFaecal metagenomic profiling revealed Bifidobacterium pseudolongum enrichment in FMD-treated CRC mice. B. pseudolongum mediates the FMD antitumour effects by increasing the tissue-resident memory CD8+ T-cell (TRM) population in CRC mice. The level of L-arginine, a B. pseudolongum functional metabolite, increased in FMD-treated CRC mice; furthermore, L-arginine induced the TRM phenotype in vivo and in vitro. Mechanistically, L-arginine is transported by the solute carrier family 7-member 1 (SLC7A1) receptor in CD8+ T cells. Both FMD and B. pseudolongum improved anti-CTLA-4 efficacy in the orthotopic mouse CRC model. In FMD-treated patients with CRC, the CD8+ TRM cell number increased as B. pseudolongum and L-arginine accumulated. The abundance of CD8+ TRM cells and B. pseudolongum was associated with a better prognosis in patients with CRC.Conclusion B. pseudolongum contributes to the FMD antitumour effects in CRC by producing L-arginine. This promotes CD8+ T-cell differentiation into memory cells. B. pseudolongum administration is a potential CRC therapeutic strategy.