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26 result(s) for "Clewley, Daniel"
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Finding Plastic Patches in Coastal Waters using Optical Satellite Data
Satellites collecting optical data offer a unique perspective from which to observe the problem of plastic litter in the marine environment, but few studies have successfully demonstrated their use for this purpose. For the first time, we show that patches of floating macroplastics are detectable in optical data acquired by the European Space Agency (ESA) Sentinel-2 satellites and, furthermore, are distinguishable from naturally occurring materials such as seaweed. We present case studies from four countries where suspected macroplastics were detected in Sentinel-2 Earth Observation data. Patches of materials on the ocean surface were highlighted using a novel Floating Debris Index (FDI) developed for the Sentinel-2 Multi-Spectral Instrument (MSI). In all cases, floating aggregations were detectable on sub-pixel scales, and appeared to be composed of a mix of seaweed, sea foam, and macroplastics. Building first steps toward a future monitoring system, we leveraged spectral shape to identify macroplastics, and a Naïve Bayes algorithm to classify mixed materials. Suspected plastics were successfully classified as plastics with an accuracy of 86%.
Detection and Classification of Floating Plastic Litter Using a Vessel-Mounted Video Camera and Deep Learning
Marine plastic pollution is a major environmental concern, with significant ecological, economic, public health and aesthetic consequences. Despite this, the quantity and distribution of marine plastics is poorly understood. Better understanding of the global abundance and distribution of marine plastic debris is vital for global mitigation and policy. Remote sensing methods could provide substantial data to overcome this issue. However, developments have been hampered by the limited availability of in situ data, which are necessary for development and validation of remote sensing methods. Current in situ methods of floating macroplastics (size greater than 1 cm) are usually conducted through human visual surveys, often being costly, time-intensive and limited in coverage. To overcome this issue, we present a novel approach to collecting in situ data using a trained object-detection algorithm to detect and quantify marine macroplastics from video footage taken from vessel-mounted general consumer cameras. Our model was able to successfully detect the presence or absence of plastics from real-world footage with an accuracy of 95.2% without the need to pre-screen the images for horizon or other landscape features, making it highly portable to other environmental conditions. Additionally, the model was able to differentiate between plastic object types with a Mean Average Precision of 68% and an F1-Score of 0.64. Further analysis suggests that a way to improve the separation among object types using only object detection might be through increasing the proportion of the image area covered by the plastic object. Overall, these results demonstrate how low-cost vessel-mounted cameras combined with machine learning have the potential to provide substantial harmonised in situ data of global macroplastic abundance and distribution.
TLS2trees: A scalable tree segmentation pipeline for TLS data
Above‐ground biomass (AGB) is an important metric used to quantify the mass of carbon stored in terrestrial ecosystems. For forests, this is routinely estimated at the plot scale (typically 1 ha) using inventory measurements and allometry. In recent years, terrestrial laser scanning (TLS) has appeared as a disruptive technology that can generate a more accurate assessment of tree and plot scale AGB; however, operationalising TLS methods has had to overcome a number of challenges. One such challenge is the segmentation of individual trees from plot level point clouds that are required to estimate woody volume, this is often done manually (e.g. with interactive point cloud editing software) and can be very time consuming. Here we present TLS2trees, an automated processing pipeline and set of Python command line tools that aims to redress this processing bottleneck. TLS2trees consists of existing and new methods and is specifically designed to be horizontally scalable. The processing pipeline is demonstrated on 7.5 ha of TLS data captured across 10 plots of seven forest types; from open savanna to dense tropical rainforest. A total of 10,557 trees are segmented with TLS2trees: these are compared to 1281 manually segmented trees. Results indicate that TLS2trees performs well, particularly for larger trees (i.e. the cohort of largest trees that comprise 50% of total plot volume), where plot‐wise tree volume bias is ±0.4 m3 and %RMSE is 60%. Segmentation performance decreases for smaller trees, for example where DBH ≤10 cm; a number of reasons are suggested including performance of semantic segmentation step. The volume and scale of TLS data captured in forest plots is increasing. It is suggested that to fully utilise this data for activities such as monitoring, reporting and verification or as reference data for satellite missions an automated processing pipeline, such as TLS2trees, is required. To facilitate improvements to TLS2trees, as well as modification for other laser scanning modes (e.g. mobile and UAV laser scanning), TLS2trees is a free and open‐source software.
Mapping Coastal Marine Habitats Using UAV and Multispectral Satellite Imagery in the NEOM Region, Northern Red Sea
Effective management to conserve marine environments requires up-to-date information on the location, distribution, and extent of major benthic habitats. Remote sensing is a key tool for such assessments, enabling consistent, repeated measurements over large areas. There is particular interest in using freely available satellite images such as from the Copernicus Sentinel-2 series for accessible repeat assessments. In this study, an area of 438 km2 of the northern Red Sea coastline, adjacent to the NEOM development was mapped using Sentinel-2 imagery. A hierarchical Random Forest classification method was used, where the initial level classified pixels into a geomorphological class, followed by a second level of benthic cover classification. Uncrewed Aerial Vehicle (UAV) surveys were carried out in 12 locations in the NEOM area to collect field data on benthic cover for training and validation. The overall accuracy of the geomorphic and benthic classifications was 84.15% and 72.97%, respectively. Approximately 12% (26.26 km2) of the shallow Red Sea study area was classified as coral or dense algae and 16% (36.12 km2) was classified as rubble. These reef environments offer crucial ecosystem services and are believed to be internationally important as a global warming refugium. Seagrass meadows, covering an estimated 29.17 km2 of the study area, play a regionally significant role in carbon sequestration and are estimated to store 200 tonnes of carbon annually, emphasising the importance of their conservation for meeting the environmental goals of the NEOM megaproject. This is the first map of this region generated using Sentinel-2 data and demonstrates the feasibility of using an open source and reproducible methodology for monitoring coastal habitats in the region. The use of training data derived from UAV imagery provides a low-cost and time-efficient alternative to traditional methods of boat or snorkel surveys for covering large areas in remote sites.
Maps of active layer thickness in northern Alaska by upscaling P-band polarimetric synthetic aperture radar retrievals
Extensive, detailed information on the spatial distribution of active layer thickness (ALT) in northern Alaska and how it evolves over time could greatly aid efforts to assess the effects of climate change on the region and also help to quantify greenhouse gas emissions generated due to permafrost thaw. For this reason, we have been developing high-resolution maps of ALT throughout northern Alaska. The maps are produced by upscaling from high-resolution swaths of estimated ALT retrieved from airborne P-band synthetic aperture radar (SAR) images collected for three different years. The upscaling was accomplished by using hundreds of thousands of randomly selected samples from the SAR-derived swaths of ALT to train a machine learning regression algorithm supported by numerous spatial data layers. In order to validate the maps, thousands of randomly selected samples of SAR-derived ALT were excluded from the training in order to serve as validation pixels; error performance calculations relative to these samples yielded root-mean-square errors (RMSEs) of 7.5–9.1 cm, with bias errors of magnitude under 0.1 cm. The maps were also compared to ALT measurements collected at a number of in situ test sites; error performance relative to the site measurements yielded RMSEs of approximately 11–12 cm and bias of 2.7–6.5 cm. These data are being used to investigate regional patterns and underlying physical controls affecting permafrost degradation in the tundra biome.
Hyperspectral Leaf Area Index and Chlorophyll Retrieval over Forest and Row-Structured Vineyard Canopies
As an unprecedented stream of decametric hyperspectral observations becomes available from recent and upcoming spaceborne missions, effective algorithms are required to retrieve vegetation biophysical and biochemical variables such as leaf area index (LAI) and canopy chlorophyll content (CCC). In the context of missions such as the Environmental Mapping and Analysis Program (EnMAP), Precursore Iperspettrale della Missione Applicativa (PRISMA), Copernicus Hyperspectral Imaging Mission for the Environment (CHIME), and Surface Biology Geology (SBG), several retrieval algorithms have been developed based upon the turbid medium Scattering by Arbitrarily Inclined Leaves (SAIL) radiative transfer model. Whilst well suited to cereal crops, SAIL is known to perform comparatively poorly over more heterogeneous canopies (including forests and row-structured crops). In this paper, we investigate the application of hybrid radiative transfer models, including a modified version of SAIL (rowSAIL) and the Invertible Forest Reflectance Model (INFORM), to such canopies. Unlike SAIL, which assumes a horizontally homogeneous canopy, such models partition the canopy into geometric objects, which are themselves treated as turbid media. By enabling crown transmittance, foliage clumping, and shadowing to be represented, they provide a more realistic representation of heterogeneous vegetation. Using airborne hyperspectral data to simulate EnMAP observations over vineyard and deciduous broadleaf forest sites, we demonstrate that SAIL-based algorithms provide moderate retrieval accuracy for LAI (RMSD = 0.92–2.15, NRMSD = 40–67%, bias = −0.64–0.96) and CCC (RMSD = 0.27–1.27 g m−2, NRMSD = 64–84%, bias = −0.17–0.89 g m−2). The use of hybrid radiative transfer models (rowSAIL and INFORM) reduces bias in LAI (RMSD = 0.88–1.64, NRMSD = 27–64%, bias = −0.78–−0.13) and CCC (RMSD = 0.30–0.87 g m−2, NRMSD = 52–73%, bias = 0.03–0.42 g m−2) retrievals. Based on our results, at the canopy level, we recommend that hybrid radiative transfer models such as rowSAIL and INFORM are further adopted for hyperspectral biophysical and biochemical variable retrieval over heterogeneous vegetation.
Evaluation of ALOS PALSAR Data for High-Resolution Mapping of Vegetated Wetlands in Alaska
As the largest natural source of methane, wetlands play an important role in the carbon cycle. High-resolution maps of wetland type and extent are required to quantify wetland responses to climate change. Mapping northern wetlands is particularly important because of a disproportionate increase in temperatures at higher latitudes. Synthetic aperture radar data from a spaceborne platform can be used to map wetland types and dynamics over large areas. Following from earlier work by Whitcomb et al. (2009) using Japanese Earth Resources Satellite (JERS-1) data, we applied the “random forests” classification algorithm to variables from L-band ALOS PALSAR data for 2007, topographic data (e.g., slope, elevation) and locational information (latitude, longitude) to derive a map of vegetated wetlands in Alaska, with a spatial resolution of 50 m. We used the National Wetlands Inventory and National Land Cover Database (for upland areas) to select training and validation data and further validated classification results with an independent dataset that we created. A number of improvements were made to the method of Whitcomb et al. (2009): (1) more consistent training data in upland areas; (2) better distribution of training data across all classes by taking a stratified random sample of all available training pixels; and (3) a more efficient implementation, which allowed classification of the entire state as a single entity (rather than in separate tiles), which eliminated discontinuities at tile boundaries. The overall accuracy for discriminating wetland from upland was 95%, and the accuracy at the level of wetland classes was 85%. The total area of wetlands mapped was 0.59 million km2, or 36% of the total land area of the state of Alaska. The map will be made available to download from NASA’s wetland monitoring website.
A Python-Based Open Source System for Geographic Object-Based Image Analysis (GEOBIA) Utilizing Raster Attribute Tables
A modular system for performing Geographic Object-Based Image Analysis (GEOBIA), using entirely open source (General Public License compatible) software, is presented based around representing objects as raster clumps and storing attributes as a raster attribute table (RAT). The system utilizes a number of libraries, developed by the authors: The Remote Sensing and GIS Library (RSGISLib), the Raster I/O Simplification (RIOS) Python Library, the KEA image format and TuiView image viewer. All libraries are accessed through Python, providing a common interface on which to build processing chains. Three examples are presented, to demonstrate the capabilities of the system: (1) classification of mangrove extent and change in French Guiana; (2) a generic scheme for the classification of the UN-FAO land cover classification system (LCCS) and their subsequent translation to habitat categories; and (3) a national-scale segmentation for Australia. The system presented provides similar functionality to existing GEOBIA packages, but is more flexible, due to its modular environment, capable of handling complex classification processes and applying them to larger datasets.
Mapping blue carbon ecosystems from Earth observations at a national scale for Papua New Guinea
National maps are essential to support the conservation, restoration, and sustainable management of blue carbon ecosystems (BCE). This is particularly important for nations in the Indo-Pacific region, including Papua New Guinea (PNG), that aspire to integrate these ecosystems into their nationally determined contributions (NDCs) for ecosystem accounting. This study focussed on mapping the extent of BCEs in PNG using Earth observation data for the year 2020 and reporting on biomass and carbon storage services. Land cover categories were generated using the Living Earth framework for the 15 coastal provinces of PNG. The total BCE area in PNG (14,353 km²) comprised 30% mangrove, 65% lowland peat swamp forest, 3% saltmarsh, and 2% seagrass. Lowland peat swamp forests contribute the greatest biomass (137.94 ± 67.10 Tg) followed by mangroves (71.79 ± 27.16 Tg), with a total biomass of 212.99 ± 95.89 Tg. Across PNG, a total of 710.46 ± 362.75 Tg C were estimated for belowground carbon of BCEs (reporting to 1 m depth), almost seven times more than that of aboveground carbon (102.14 ± 45.97 Tg C). This study highlights the need for a consistent and standardised framework for mapping BCEs, which can support coordinated management of coastal landscapes across provinces that contribute to national policies and NDC reporting. This case study can be used as a demonstration for other nations where similar opportunities and challenges may exist for mapping BCE using Earth observations, with a framework that can be compared and adapted to user requirements.
A sentinel watching over inter-tidal seagrass phenology across Western Europe and North Africa
Seagrasses are marine flowering plants that form extensive meadows from the inter-tidal zone up to ~50 m depth. As biological and ecological Essential Biodiversity Variables, seagrass cover and composition provide a wide range of ecosystem services. Inter-tidal seagrass meadows provide services to many ecosystems, so monitoring their occurrence, extent, condition and diversity can be used to indicate the biodiversity and health of local ecosystems. Current global estimates of seagrass extent and recent reviews either do not mention inter-tidal seagrasses and their seasonal variation, or combine them with sub-tidal seagrasses. Here, using high-spatial and high-temporal resolution satellite data (Sentinel-2), we demonstrate a method for consistently mapping inter-tidal seagrass meadows and their phenology at a continental scale. We were able to highlight varying seasonal patterns that are observable across a 23° latitudinal range. Timings of peaks in seagrass extent varied by up to 5 months, rather than the previously assumed marginal to non-existent variation in peak timing. These results will aid management by providing high-resolution spatio-temporal monitoring data to better inform seagrass conservation and restoration. They also highlight the high level of seasonal variability in inter-tidal seagrass, meaning combination with sub-tidal seagrass for global assessments will likely produce misleading or incorrect estimates.