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5,693 result(s) for "Collins, Patrick"
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Regulation of securities, markets, and transactions : a guide to the new environment
\"This book provides a description about the various government regulations of securities, securities markets, and securities transactions. The book defines, describes, and explains U.S. securities regulation. The book will be current as of the signing of the securities reform act (expected to be signed by President Obama in mid-2010). Major parts within the book include: Regulation; Accounting and Auditing; Introduction to Notes; Notes; Sections of Public Laws; Sections of Codified Securities Laws; Organizations. In addition, there will be an extensive reference section, glossary, and list of useful websites (by both name and function).\"-- Provided by publisher.
DNA double-strand breaks induce H2Ax phosphorylation domains in a contact-dependent manner
Efficient repair of DNA double-strand breaks (DSBs) requires a coordinated DNA Damage Response (DDR), which includes phosphorylation of histone H2Ax, forming γH2Ax. This histone modification spreads beyond the DSB into neighboring chromatin, generating a DDR platform that protects against end disassociation and degradation, minimizing chromosomal rearrangements. However, mechanisms that determine the breadth and intensity of γH2Ax domains remain unclear. Here, we show that chromosomal contacts of a DSB site are the primary determinants for γH2Ax landscapes. DSBs that disrupt a topological border permit extension of γH2Ax domains into both adjacent compartments. In contrast, DSBs near a border produce highly asymmetric DDR platforms, with γH2Ax nearly absent from one broken end. Collectively, our findings lend insights into a basic DNA repair mechanism and how the precise location of a DSB may influence genome integrity. Formation of γH2Ax serves as a checkpoint for double-strand break (DSB) repair pathways. Here the authors reveal via integrated chromatin analysis that γH2Ax domains are established by chromosomal contacts with the DSB site.
Inheritance and Characterization of Strong Resistance to Phosphine in Sitophilus oryzae (L.)
Sitophilus oryzae (Linnaeus) is a major pest of stored grain across Southeast Asia and is of increasing concern in other regions due to the advent of strong resistance to phosphine, the fumigant used to protect stored grain from pest insects. We investigated the inheritance of genes controlling resistance to phosphine in a strongly resistant S. oryzae strain (NNSO7525) collected in Australia and find that the trait is autosomally inherited and incompletely recessive with a degree of dominance of -0.66. The strongly resistant strain has an LC50 52 times greater than a susceptible reference strain (LS2) and 9 times greater than a weakly resistant strain (QSO335). Analysis of F2 and backcross progeny indicates that two or more genes are responsible for strong resistance, and that one of these genes, designated So_rph1, not only contributes to strong resistance, but is also responsible for the weak resistance phenotype of strain QSO335. These results demonstrate that the genetic mechanism of phosphine resistance in S. oryzae is similar to that of other stored product insect pests. A unique observation is that a subset of the progeny of an F1 backcross generation are more strongly resistant to phosphine than the parental strongly resistant strain, which may be caused by multiple alleles of one of the resistance genes.
Creative economies in peripheral regions
This is the first study to draw on international research carried out across four EU member states to add to the neglected area of the creative economy of peripheral regions.
Phosphine Resistance in the Rust Red Flour Beetle, Tribolium castaneum (Coleoptera: Tenebrionidae): Inheritance, Gene Interactions and Fitness Costs
The recent emergence of heritable high level resistance to phosphine in stored grain pests is a serious concern among major grain growing countries around the world. Here we describe the genetics of phosphine resistance in the rust red flour beetle Tribolium castaneum (Herbst), a pest of stored grain as well as a genetic model organism. We investigated three field collected strains of T. castaneum viz., susceptible (QTC4), weakly resistant (QTC1012) and strongly resistant (QTC931) to phosphine. The dose-mortality responses of their test- and inter-cross progeny revealed that most resistance was conferred by a single major resistance gene in the weakly (3.2x) resistant strain. This gene was also found in the strongly resistant (431x) strain, together with a second major resistance gene and additional minor factors. The second major gene by itself confers only 12-206x resistance, suggesting that a strong synergistic epistatic interaction between the genes is responsible for the high level of resistance (431x) observed in the strongly resistant strain. Phosphine resistance is not sex linked and is inherited as an incompletely recessive, autosomal trait. The analysis of the phenotypic fitness response of a population derived from a single pair inter-strain cross between the susceptible and strongly resistant strains indicated the changes in the level of response in the strong resistance phenotype; however this effect was not consistent and apparently masked by the genetic background of the weakly resistant strain. The results from this work will inform phosphine resistance management strategies and provide a basis for the identification of the resistance genes.
BAP1 promotes osteoclast function by metabolic reprogramming
Treatment of osteoporosis commonly diminishes osteoclast number which suppresses bone formation thus compromising fracture prevention. Bone formation is not suppressed, however, when bone degradation is reduced by retarding osteoclast functional resorptive capacity, rather than differentiation. We find deletion of deubiquitinase, BRCA1-associated protein 1 (Bap1) , in myeloid cells ( Bap1 ∆LysM ), arrests osteoclast function but not formation. Bap1 ∆LysM osteoclasts fail to organize their cytoskeleton which is essential for bone degradation consequently increasing bone mass in both male and female mice. The deubiquitinase activity of BAP1 modifies osteoclast function by metabolic reprogramming. Bap1 deficient osteoclast upregulate the cystine transporter, Slc7a11 , by enhanced H2Aub occupancy of its promoter. SLC7A11 controls cellular reactive oxygen species levels and redirects the mitochondrial metabolites away from the tricarboxylic acid cycle, both being necessary for osteoclast function. Thus, in osteoclasts BAP1 appears to regulate the epigenetic-metabolic axis and is a potential target to reduce bone degradation while maintaining osteogenesis in osteoporotic patients. Here, the authors demonstrate that BRCA1-associated protein 1 (Bap1) regulates osteoclast’s capacity to degrade bone. Reprogramming of epigenetic-metabolic axis upon Bap1 loss inhibits bone degradation, preserving bone mass, making it a potential therapeutic target for osteoporosis.
Who makes the city? The evolution of Galway city
This paper sets out to better understand the roles of various actors and actions in the ‘making’ of Galway city. From the formation of the state, with a population of just over 14,000, the city has enjoyed population growth rates above EU and Irish averages over the past three decades. This paper maps a series of growth phases resulting from sometimes deliberate and other times non-deliberate policy decisions. The theoretical lens adopted is that of evolutionary economic geography. This is an attempt to counteract the tendency in broader social science research to underplay geographical aspects, such as places, space and scales. Economic geography – and evolutionary economic geography in particular – better identifies the complexity and nuance of place development. Theorists such as Boschma (2017) and Martin & Sunley (2015) consider development as a path-dependent process. Development is situated and place-based. This requires a more historically attuned perspective and a recognition that the role played by institutions, government and policy is vital. The paper concludes with a broad reflection on the role of spatial development policy and the potential future development of the city.
The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes
Genome stability relies on epigenetic mechanisms that enforce repression of endogenous retroviruses (ERVs). Current evidence suggests that distinct chromatin-based mechanisms repress ERVs in cells of embryonic origin (histone methylation dominant) vs. more differentiated cells (DNA methylation dominant). However, the latter aspect of this model has not been tested. Remarkably, and in contrast to the prevailing model, we find that repressive histone methylation catalyzed by the enzyme SETDB1 is critical for suppression of specific ERV families and exogenous retroviruses in committed B-lineage cells from adult mice. The profile of ERV activation in SETDB1-deficient B cells is distinct from that observed in corresponding embryonic tissues, despite the loss of repressive chromatin modifications at all ERVs. We provide evidence that, on loss of SETDB1, ERVs are activated in a lineage-specific manner depending on the set of transcription factors available to target proviral regulatory elements. These findings have important implications for genome stability in somatic cells, as well as the interface between epigenetic repression and viral latency.
Receptor binding by an H7N9 influenza virus from humans
An examination of the receptor-binding properties of the H7N9 virus, which has recently emerged in China, shows that the virus has acquired the ability to bind the human α-2,6-linked sialic acid receptor while retaining binding to the avian α-2,3-linked receptor, and therefore does not have the preference for human versus avian receptors characteristic of pandemic viruses. H7N9 avian flu virus isolates examined The H7N9 avian flu virus emerged in the human population on mainland China in February 2013, and by the first week of July WHO had recorded 133 cases including 43 deaths. Most cases so far have been linked to live bird markets. In this issue of Nature two groups report on the receptor-binding properties of H7N9. Both find that the virus has acquired the ability to bind the human α-2,3-linked sialic acid receptor yet has a retained preference for binding to the avian 2,3-linked receptor, a factor that may restrict its further evolution towards efficient transmission between humans. Steven Gamblin and colleagues also solve the crystal structure of the H7 haemagglutinin in complex with the receptor analogues, revealing details of how the human-receptor-binding properties may have arisen. Yuelong Shu and colleagues examine the pattern of virus infection in lung tissue. In human tracheal and lung explants, the virus infects epithelial cells in the lower respiratory tract and type II pneumocytes in the alveoli, and is better able to replicate in the lower respiratory tract compared with the trachea, a possible factor in the inefficient human-to-human transmission seen to date. They also report hypercytokinaemia in some patients — a cytokine storm that can contribute to disease severity — comparable to that seen in some H5N1 infections. Of the 132 people known to have been infected with H7N9 influenza viruses in China, 37 died, and many were severely ill 1 . Infection seems to have involved contact with infected poultry 2 , 3 . We have examined the receptor-binding properties of this H7N9 virus and compared them with those of an avian H7N3 virus. We find that the human H7 virus has significantly higher affinity for α-2,6-linked sialic acid analogues (‘human receptor’) than avian H7 while retaining the strong binding to α-2,3-linked sialic acid analogues (‘avian receptor’) characteristic of avian viruses. The human H7 virus does not, therefore, have the preference for human versus avian receptors characteristic of pandemic viruses. X-ray crystallography of the receptor-binding protein, haemagglutinin (HA), in complex with receptor analogues indicates that both human and avian receptors adopt different conformations when bound to human H7 HA than they do when bound to avian H7 HA. Human receptor bound to human H7 HA exits the binding site in a different direction to that seen in complexes formed by HAs from pandemic viruses 4 , 5 and from an aerosol-transmissible H5 mutant 6 . The human-receptor-binding properties of human H7 probably arise from the introduction of two bulky hydrophobic residues by the substitutions Gln226Leu and Gly186Val. The former is shared with the 1957 H2 and 1968 H3 pandemic viruses and with the aerosol-transmissible H5 mutant. We conclude that the human H7 virus has acquired some of the receptor-binding characteristics that are typical of pandemic viruses, but its retained preference for avian receptor may restrict its further evolution towards a virus that could transmit efficiently between humans, perhaps by binding to avian-receptor-rich mucins in the human respiratory tract 7 rather than to cellular receptors.