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"Conte, Luana"
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Targeting the gut–lung microbiota axis by means of a high-fibre diet and probiotics may have anti-inflammatory effects in COVID-19 infection
by
Conte, Luana
,
Toraldo, Domenico Maurizio
in
Betacoronavirus - isolation & purification
,
Coronavirus Infections - diet therapy
,
Coronavirus Infections - epidemiology
2020
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) 1 is a 2019 novel coronavirus, which only in the European area has led to more than 300,000 cases with at least 21,000 deaths. This manuscript aims to speculate that the manipulation of the microbial patterns through the use of probiotics and dietary fibers consumption may contribute to reduce inflammation and strengthen the immune system response in COVID-19 infection.
The reviews of this paper are available via the supplemental material section.
Journal Article
Development and Evaluation of a Keypoint-Based Video Stabilization Pipeline for Oral Capillaroscopy
2025
Capillaroscopy imaging is a non-invasive technique used to examine the microcirculation of the oral mucosa. However, the acquired video sequences are often affected by motion noise and shaking, which can compromise diagnostic accuracy and hinder the development of automated systems for capillary identification and segmentation. To address these challenges, we implemented a comprehensive video stabilization model, structured as a multi-phase pipeline and visually represented through a flow-chart. The proposed method integrates keypoint extraction, optical flow estimation, and affine transformation-based frame alignment to enhance video stability. Within this framework, we evaluated the performance of three keypoint extraction algorithms—Scale-Invariant Feature Transform (SIFT), Oriented FAST and Rotated BRIEF (ORB) and Good Features to Track (GFTT)—on a curated dataset of oral capillaroscopy videos. To simulate real-world acquisition conditions, synthetic tremors were introduced via Gaussian affine transformations. Experimental results demonstrate that all three algorithms yield comparable stabilization performance, with GFTT offering slightly higher structural fidelity and ORB excelling in computational efficiency. These findings validate the effectiveness of the proposed model and highlight its potential for improving the quality and reliability of oral videocapillaroscopy imaging. Experimental evaluation showed that the proposed pipeline achieved an average SSIM of 0.789 and reduced jitter to 25.8, compared to the perturbed input sequences. In addition, path smoothness and RMS errors (translation and rotation) consistently indicated improved stabilization across all tested feature extractors. Compared to previous stabilization approaches in nailfold capillaroscopy, our method achieved comparable or superior structural fidelity while maintaining computational efficiency.
Journal Article
Multi-Class Segmentation and Classification of Intestinal Organoids: YOLO Stand-Alone vs. Hybrid Machine Learning Pipelines
by
De Nunzio, Giorgio
,
Conte, Luana
,
Raso, Giuseppe
in
Accuracy
,
Algorithms
,
automatic segmentation
2025
Background: The automated analysis of intestinal organoids in microscopy images are essential for high-throughput morphological studies, enabling precision and scalability. Traditional manual analysis is time-consuming and subject to observer bias, whereas Machine Learning (ML) approaches have recently demonstrated superior performance. Purpose: This study aims to evaluate YOLO (You Only Look Once) for organoid segmentation and classification, comparing its standalone performance with a hybrid pipeline that integrates DL-based feature extraction and ML classifiers. Methods: The dataset, consisting of 840 light microscopy images and over 23,000 annotated intestinal organoids, was divided into training (756 images) and validation (84 images) sets. Organoids were categorized into four morphological classes: cystic non-budding organoids (Org0), early organoids (Org1), late organoids (Org3), and Spheroids (Sph). YOLO version 10 (YOLOv10) was trained as a segmenter-classifier for the detection and classification of organoids. Performance metrics for YOLOv10 as a standalone model included Average Precision (AP), mean AP at 50% overlap (mAP50), and confusion matrix evaluated on the validation set. In the hybrid pipeline, trained YOLOv10 segmented bounding boxes, and features extracted from these regions using YOLOv10 and ResNet50 were classified with ML algorithms, including Logistic Regression, Naive Bayes, K-Nearest Neighbors (KNN), Random Forest, eXtreme Gradient Boosting (XGBoost), and Multi-Layer Perceptrons (MLP). The performance of these classifiers was assessed using the Receiver Operating Characteristic (ROC) curve and its corresponding Area Under the Curve (AUC), precision, F1 score, and confusion matrix metrics. Principal Component Analysis (PCA) was applied to reduce feature dimensionality while retaining 95% of cumulative variance. To optimize the classification results, an ensemble approach based on AUC-weighted probability fusion was implemented to combine predictions across classifiers. Results: YOLOv10 as a standalone model achieved an overall mAP50 of 0.845, with high AP across all four classes (range 0.797–0.901). In the hybrid pipeline, features extracted with ResNet50 outperformed those extracted with YOLO, with multiple classifiers achieving AUC scores ranging from 0.71 to 0.98 on the validation set. Among all classifiers, Logistic Regression emerged as the best-performing model, achieving the highest AUC scores across multiple classes (range 0.93–0.98). Feature selection using PCA did not improve classification performance. The AUC-weighted ensemble method further enhanced performance, leveraging the strengths of multiple classifiers to optimize prediction, as demonstrated by improved ROC-AUC scores across all organoid classes (range 0.92–0.98). Conclusions: This study demonstrates the effectiveness of YOLOv10 as a standalone model and the robustness of hybrid pipelines combining ResNet50 feature extraction and ML classifiers. Logistic Regression emerged as the best-performing classifier, achieving the highest ROC-AUC across multiple classes. This approach ensures reproducible, automated, and precise morphological analysis, with significant potential for high-throughput organoid studies and live imaging applications.
Journal Article
Integrative Bioinformatics Analysis of hsa-miR-21 in Breast Cancer Reveals a Prognostic Hub-Gene Signature
by
Tumolo, Maria Rosaria
,
Guarino, Roberto
,
Sabina, Saverio
in
Algorithms
,
Apoptosis
,
Bioinformatics
2026
Breast cancer (BC) is the most frequently diagnosed malignancy in women and remains a leading cause of cancer-related mortality worldwide. Among the oncogenic microRNAs, hsa-miR-21 has been consistently implicated in tumorigenesis, yet a comprehensive network-level understanding of its regulatory landscape in BC is lacking. In this study, we performed an integrative bioinformatics analysis to characterize the molecular pathways and prognostic impact of hsa-miR-21. Experimentally validated mRNA targets were retrieved from miRTarBase and used to construct a high-confidence protein–protein interaction network via STRING, followed by hub-gene prioritization in Cytoscape. Functional enrichment analyses were conducted with DAVID to assess Gene Ontology (GO) categories and KEGG pathways. Survival analyses were performed in large BC cohorts from METABRIC and TCGA using the Kaplan–Meier Plotter. We identified 12 hub genes that are central regulators of apoptosis, proliferation, immune signaling, and transcriptional control. GO and KEGG analyses revealed enrichment in cancer-related, immune, and metabolic pathways, underscoring the pleiotropic role of miR-21. While miR-21 expression alone was not significantly associated with overall survival, a composite hub-gene signature demonstrated strong prognostic value. These findings highlight the importance of network-level biomarkers in BC and provide a reproducible framework for dissecting the clinical relevance of disease-associated miRNAs.
Journal Article
Tumor Microenvironment in Melanoma Brain Metastasis: A New Potential Target?
by
Abbritti, Rosaria Viola
,
Iaboni, Edvige
,
Tripodo, Massimo
in
Animals
,
Antimitotic agents
,
Antineoplastic agents
2025
Melanoma, a malignant skin tumor, is the third skin tumor and the third cause of brain metastases. The development and introduction of systemic therapies, such as Braf inhibitors and checkpoint inhibitors, have guaranteed an increase in overall survival. The appearance of brain metastases, which determines a median survival of less than 5 months, represents a sign of systemic disease progression and tumor instability. In this view, in addition to systemic therapy, the therapeutic options can be surgery, stereotactic surgery, and whole-brain radiation therapy. However, it has been observed that the response to systemic therapies of brain metastatic lesions, compared to extracerebral ones, does not guarantee complete local tumor control, thus increasing the mortality and morbidity of patients. This phenomenon, tumor escape, makes systemic therapy partly ineffective. How melanoma cells migrate, cross the blood–brain barrier, and invade brain tissue is still being studied. The melanocytic metastatic brain tumor microenvironment and its assay seem to have a key role in the response and therefore in the progression of metastatic lesions. Through this work, the intent is to underline the importance of the brain tumor microenvironment and how it can influence tumor growth, its response to therapy, and the patient’s overall survival.
Journal Article
The Contribution of Artificial Intelligence in Nursing Education: A Scoping Review of the Literature
by
Lupo, Roberto
,
Rubbi, Ivan
,
Marasciulo, Dario
in
Algorithms
,
Analysis
,
Artificial intelligence
2025
Background and Aim: Artificial intelligence (AI) is among the most promising innovations for transforming nursing education, making it more interactive, personalized, and competency-based. However, its integration also raises significant ethical and practical concerns. This scoping review aims to analyze and summarize key studies on the application of AI in university-level nursing education, focusing on its benefits, challenges, and future prospects. Methods: A scoping review was conducted using the Population, Concept, and Context (PCC) framework, targeting nursing students and educators in academic settings. A comprehensive search was carried out across the PubMed, Scopus, and Web of Science databases. Only peer-reviewed original studies published in English were included. Two researchers independently screened the studies, resolving any disagreements through team discussion. Data were synthesized narratively. Results: Of the 569 articles initially identified, 11 original studies met the inclusion criteria. The findings indicate that AI-based tools—such as virtual simulators and ChatGPT—can enhance students’ learning experiences, communication skills, and clinical preparedness. Nonetheless, several challenges were identified, including increased simulation-related anxiety, potential misuse, and ethical concerns related to data quality, privacy, and academic integrity. Conclusions: AI offers significant opportunities to enhance nursing education; however, its implementation must be approached with critical awareness and responsibility. It is essential that students develop both digital competencies and ethical sensitivity to fully leverage AI’s potential while ensuring high-quality education and responsible nursing practice.
Journal Article
The Prognostic Power of miR-21 in Breast Cancer: A Systematic Review and Meta-Analysis
by
Tumolo, Maria Rosaria
,
Guarino, Roberto
,
Conte, Luana
in
Biomarkers
,
Biomarkers, Tumor - genetics
,
Breast cancer
2025
Breast cancer (BC) is one of the most common malignancies among women worldwide. Despite advances in early detection and treatment, prognosis remains highly variable. Molecular biomarkers, such as microRNAs (miRNAs), have emerged as promising tools to refine prognostic assessment. Among them, miR-21 is consistently overexpressed in solid tumors and implicated in key oncogenic pathways. This systematic review and meta-analysis aimed to clarify the prognostic significance of miR-21 in BC and explore its molecular mechanisms through bioinformatic analyses. A systematic search of PubMed, Scopus, and Web of Science up to April 2025 identified 18 eligible observational studies. Pooled analyses showed that high miR-21 expression was significantly associated with poorer overall survival (OS) (HR = 2.37, 95% CI: 1.42–3.98) and recurrence-related outcomes (DFS/RFS) (HR = 2.10, 95% CI: 1.32–3.34). Subgroup analyses confirmed robust associations across different cut-off definitions and revealed particularly strong effects in triple-negative BC (HR = 5.69) and mixed subtypes (HR = 2.55), but no significant association in HER2-positive BC. Bioinformatic analysis identified target genes such as PTEN, BCL2, STAT3, and MYC, involved in apoptosis regulation, proliferation, NF-κB signaling, and immune modulation. These findings provide consistent evidence that miR-21 is a promising minimally invasive prognostic biomarker in BC, particularly in aggressive subtypes, and support its integration into future multimodal prognostic models.
Journal Article
Machine learning algorithms distinguish discrete digital emotional fingerprints for web pages related to back pain
2023
Back pain is the leading cause of disability worldwide. Its emergence relates not only to the musculoskeletal degeneration biological substrate but also to psychosocial factors; emotional components play a pivotal role. In modern society, people are significantly informed by the Internet; in turn, they contribute social validation to a “successful” digital information subset in a dynamic interplay. The Affective component of medical pages has not been previously investigated, a significant gap in knowledge since they represent a critical biopsychosocial feature. We tested the hypothesis that successful pages related to spine pathology embed a consistent emotional pattern, allowing discrimination from a control group. The pool of web pages related to spine or hip/knee pathology was automatically selected by relevance and popularity and submitted to automated sentiment analysis to generate emotional patterns. Machine Learning (ML) algorithms were trained to predict page original topics from patterns with binary classification. ML showed high discrimination accuracy; disgust emerged as a discriminating emotion. The findings suggest that the digital affective “successful content” (collective consciousness) integrates patients’ biopsychosocial ecosystem, with potential implications for the emergence of chronic pain, and the endorsement of health-relevant specific behaviors. Awareness of such effects raises practical and ethical issues for health information providers.
Journal Article
A maChine and deep Learning Approach to predict pulmoNary hyperteNsIon in newbornS with congenital diaphragmatic Hernia (CLANNISH): Protocol for a retrospective study
by
Como, Giuseppe
,
Amodeo, Ilaria
,
Conte, Luana
in
Algorithms
,
Analysis
,
Artificial intelligence
2021
Outcome predictions of patients with congenital diaphragmatic hernia (CDH) still have some limitations in the prenatal estimate of postnatal pulmonary hypertension (PH). We propose applying Machine Learning (ML), and Deep Learning (DL) approaches to fetuses and newborns with CDH to develop forecasting models in prenatal epoch, based on the integrated analysis of clinical data, to provide neonatal PH as the first outcome and, possibly: favorable response to fetal endoscopic tracheal occlusion (FETO), need for Extracorporeal Membrane Oxygenation (ECMO), survival to ECMO, and death. Moreover, we plan to produce a (semi)automatic fetus lung segmentation system in Magnetic Resonance Imaging (MRI), which will be useful during project implementation but will also be an important tool itself to standardize lung volume measures for CDH fetuses.
Patients with isolated CDH from singleton pregnancies will be enrolled, whose prenatal checks were performed at the Fetal Surgery Unit of the Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico (Milan, Italy) from the 30th week of gestation. A retrospective data collection of clinical and radiological variables from newborns' and mothers' clinical records will be performed for eligible patients born between 01/01/2012 and 31/12/2020. The native sequences from fetal magnetic resonance imaging (MRI) will be collected. Data from different sources will be integrated and analyzed using ML and DL, and forecasting algorithms will be developed for each outcome. Methods of data augmentation and dimensionality reduction (feature selection and extraction) will be employed to increase sample size and avoid overfitting. A software system for automatic fetal lung volume segmentation in MRI based on the DL 3D U-NET approach will also be developed.
This retrospective study received approval from the local ethics committee (Milan Area 2, Italy). The development of predictive models in CDH outcomes will provide a key contribution in disease prediction, early targeted interventions, and personalized management, with an overall improvement in care quality, resource allocation, healthcare, and family savings. Our findings will be validated in a future prospective multicenter cohort study.
The study was registered at ClinicalTrials.gov with the identifier NCT04609163.
Journal Article
Enhancing Breast Cancer Risk Prediction with Machine Learning: Integrating BMI, Smoking Habits, Hormonal Dynamics, and BRCA Gene Mutations—A Game-Changer Compared to Traditional Statistical Models?
by
De Nunzio, Giorgio
,
Rizzo, Emanuele
,
Civino, Emanuela
in
Accuracy
,
Algorithms
,
Artificial intelligence
2024
The association between genetics and lifestyle factors is crucial when determining breast cancer susceptibility, a leading cause of deaths globally. This research aimed to compare the body mass index, smoking behavior, hormonal influences, and BRCA gene mutations between affected patients and healthy individuals, all with a family history of cancer. All these factors were then utilized as features to train a machine learning (ML) model to predict the risk of breast cancer development. Between 2020 and 2023, a total of 1389 women provided detailed lifestyle and risk factor data during visits to a familial cancer center in Italy. Descriptive and inferential statistics were assessed to explore the differences between the groups. Among the various classifiers used, the ensemble of decision trees was the best performer, with a 10-fold cross-validation scheme for training after normalizing the features. The performance of the model was evaluated using the receiver operating characteristic (ROC) curve and its area under the curve (AUC), alongside the accuracy, sensitivity, specificity, precision, and F1 score. Analysis revealed that individuals in the tumor group exhibited a higher risk profile when compared to their healthy counterparts, particularly in terms of the lifestyle and genetic markers. The ML model demonstrated predictive power, with an AUC of 81%, 88% sensitivity, 57% specificity, 78% accuracy, 80% precision, and an F1 score of 0.84. These metrics significantly outperformed traditional statistical prediction models, including the BOADICEA and BCRAT, which showed an AUC below 0.65. This study demonstrated the efficacy of an ML approach in identifying women at higher risk of breast cancer, leveraging lifestyle and genetic factors, with an improved predictive performance over traditional methods.
Journal Article