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Aim Climate change poses significant threats to biodiversity, including impacts on species distributions, abundance and ecological interactions. At a landscape scale, these impacts, and biotic responses such as adaptation and migration, will be mediated by spatial heterogeneity in climate and climate change. We examine several aspects of the geography of climate change and their significance for biodiversity conservation. Location California and Nevada, USA. Methods Using current climate surfaces (PRISM) and two scenarios of future climate (Alb, 2070-2099, warmer-drier and warmer-wetter), we mapped disappearing, declining, expanding and novel climates, and the velocity and direction of climate change in California and Nevada. We also examined finescale spatial heterogeneity in protected areas of the San Francisco Bay Area in relation to reserve size, topographic complexity and distance from the ocean. Results Under the two climate change scenarios, current climates across most of California and Nevada will shrink greatly in extent, and the climates of the highest peaks will disappear from this region. Expanding and novel climates are projected for the Central Valley. Current temperature isoclines are projected to move up to 4.9 km year⁻ⁱ in flatter regions, but substantially slower in mountainous areas because of steep local topoclimate gradients. In the San Francisco Bay Area, climate diversity within currently protected areas increases with reserve size and proximity to the ocean (the latter because of strong coastal climate gradients). However, by 2100 of almost 500 protected areas (> 100 ha), only eight of the largest are projected to experience temperatures within their currently observed range. Topoclimate variability will further increase the range of conditions experienced and needs to be incorporated in future analyses. Main Conclusions Spatial heterogeneity in climate, from mesoclimate to topoclimate scales, represents an important spatial buffer in response to climate change, and merits increased attention in conservation planning.

Community assembly theory suggests that two processes affect the distribution of trait values within communities: competition and habitat filtering. Within a local community, competition leads to ecological differentiation of coexisting species, while habitat filtering reduces the spread of trait values, reflecting shared ecological tolerances. Many statistical tests for the effects of competition exist in the literature, but measures of habitat filtering are less well-developed. Here, we present convex hull volume, a construct from computational geometry, which provides an n-dimensional measure of the volume of trait space occupied by species in a community. Combined with ecological null models, this measure offers a useful test for habitat filtering. We use convex hull volume and a null model to analyze California woody-plant trait and community data. Our results show that observed plant communities occupy less trait space than expected from random assembly, a result consistent with habitat filtering.

Plant litter stocks are critical, regionally for their role in fueling fire regimes and controlling soil fertility, and globally through their feedback to atmospheric CO2 and climate. Here we employ two global databases linking plant functional types to decomposition rates of wood and leaf litter (Cornwell et al., 2008; Weedon et al., 2009) to improve future projections of climate and carbon cycle using an intermediate complexity Earth System model. Implementing separate wood and leaf litter decomposabilities and their temperature sensitivities for a range of plant functional types yielded a more realistic distribution of litter stocks in all present biomes with the exception of boreal forests and projects a strong increase in global litter stocks by 35 Gt C and a concomitant small decrease in atmospheric CO2 by 3 ppm by the end of this century. Despite a relatively strong increase in litter stocks, the modified parameterization results in less elevated wildfire emissions because of a litter redistribution towards more humid regions.

Existing data suggest that NF-kappaB signaling is a key regulator of cancer-induced skeletal muscle wasting. However, identification of the components of this signaling pathway and of the NF-κB transcription factors that regulate wasting is far from complete. In muscles of C26 tumor bearing mice, overexpression of dominant negative (d.n.) IKKβ blocked muscle wasting by 69% and the IκBα-super repressor blocked wasting by 41%. In contrast, overexpression of d.n. IKKα or d.n. NIK did not block C26-induced wasting. Surprisingly, overexpression of d.n. p65 or d.n. c-Rel did not significantly affect muscle wasting. Genome-wide mRNA expression arrays showed upregulation of many genes previously implicated in muscle atrophy. To test if these upregulated genes were direct targets of NF-κB transcription factors, we compared genome-wide p65 binding to DNA in control and cachectic muscle using ChIP-sequencing. Bioinformatic analysis of ChIP-sequencing data from control and C26 muscles showed very little p65 binding to genes in cachexia and little to suggest that upregulated p65 binding influences the gene expression associated with muscle based cachexia. The p65 ChIP-seq data are consistent with our finding of no significant change in protein binding to an NF-κB oligonucleotide in a gel shift assay, no activation of a NF-κB-dependent reporter, and no effect of d.n.p65 overexpression in muscles of tumor bearing mice. Taken together, these data support the idea that although inhibition of IκBα, and particularly IKKβ, blocks cancer-induced wasting, the alternative NF-κB signaling pathway is not required. In addition, the downstream NF-κB transcription factors, p65 and c-Rel do not appear to regulate the transcriptional changes induced by the C26 tumor. These data are consistent with the growing body of literature showing that there are NF-κB-independent substrates of IKKβ and IκBα that regulate physiological processes.

1. Populations of Metrosideros polymorpha establish across a broad range of precipitation in Hawai'i - from <400 to >10000 mm per year. To determine whether adjustment of hydraulic and photosynthetic traits could contribute to this success in both high and low rainfall, we sampled populations on the wet and the dry sides of Hawai'i Island, replicated on two different-aged lava flows at similar elevation and mean annual temperature. 2. We quantified 24 stem and leaf traits in an integrated study of hydraulics, gas exchange, leaf chemistry and anatomy. 3. Values for traits associated with capacity for water transport through the plant and gas exchange per leaf area were higher at dry sites, including photosynthetic capacity, nitrogen per leaf area and hydraulic conductivity on both sapwood area and leaf area basis. These adjustments, due to plastic and/or heritable differentiation, would partially compensate for generally lower water availability. 4. Specific leaf area shifted towards lower values at the dry sites. However, several other traits associated directly with drought tolerance were inflexible across sites, including stem vulnerability to embolism and leaf cuticular conductance, indicating that the ability to persist through dry periods is sustained across the species' range. 5. The ability of M. polymorpha to establish across a wide range of habitats is associated with, on one hand, adjustments in traits that would enable sustained growth across a dramatic range of moisture supply while simultaneously maintaining as fixed other traits that would contribute to survival through extended drought.

Community assembly processes are thought to shape the mean, spread, and spacing of functional trait values within communities. Two broad categories of assembly processes have been proposed: first, a habitat filter that restricts the range of viable strategies and second, a partitioning of microsites and/or resources that leads to a limit to the similarity of coexisting species. The strength of both processes may be dependent on conditions at a particular site and may change along an abiotic gradient. We sampled environmental variables and plant communities in 44 plots across the varied topography of a coastal California landscape. We characterized 14 leaf, stem, and root traits for 54 woody plant species, including detailed intraspecific data for two traits with the goal of understanding the connection between traits and assembly processes in a variety of environmental conditions. We examined the within-community mean, range, variance, kurtosis, and other measures of spacing of trait values. In this landscape, there was a topographically mediated gradient in water availability. Across this gradient we observed strong shifts in both the plot-level mean trait values and the variation in trait values within communities. Trends in trait means with the environment were due largely to species turnover, with intraspecific shifts playing a smaller role. Traits associated with a vertical partitioning of light showed a greater range and variance on the wet soils, while nitrogen per area, which is associated with water use efficiency, showed a greater spread on the dry soils. We found strong nonrandom patterns in the trait distributions consistent with expectations based on trait-mediated community assembly. There was a significant reduction in the range of six out of 11 leaf and stem functional trait values relative to a null model. For specific leaf area (SLA) we found a significant even spacing of trait values relative to the null model. For seed size we found a more platykurtic distribution than expected. These results suggest that both a habitat filter and a limit to the similarity of coexisting species can simultaneously shape the distribution of traits and the assembly of local plant communities.

The coupling of carbon cycle and nitrogen cycle drives the food web structure and biogeochemistry of an ecosystem. However, across precipitation gradients, there may be a shift in C pool and N pool from above- to belowground because of shifting plant stoichiometry and allocation. Based on previous evidence, biomass allocation to roots should increase with aridity, while leaf [N] should increase. If their effect sizes are equal, they should cancel each other out, and the above- and belowground proportions of the N would remain constant. Here, we present the first study to explicitly compare above- and belowground pool sizes of N and C within predominant plant species along precipitation gradients. Biomass and nutrient concentrations of leaves, stems and roots of three predominant species were measured along two major precipitation gradients in Inner Mongolia, China. Along the two gradients, the effect sizes of the biomass shifts were remarkably consistent among three predominant species. However, the size of the shift in aboveground [N] was not, leading to a species-specific pattern in above- and belowground pool size. In two species (Stipa grandis and Artemisia ordosica) the effect sizes of biomass allocation and [N] were equal and the proportion of N of above- and belowground did not change with aridity, but in S. bungeana the increase in leaf [N] with aridity was much weaker than the biomass shift, leading to a decrease in the proportion of N aboveground at dry sites. We have found examples of consistent N pool sizes above- and belowground and a shift to a greater proportion of belowground N in drier sites depending on the species. We suggest that precipitation gradients do potentially decouple the C and N pool, but the exact nature of the decoupling depends on the dominant species' capacity for intraspecific variation.

The hump-shaped relationship between plant species richness and productivity is a well-established and important paradigm. While plot-based species richness patterns on local scales have received much attention, little is currently known about species-based patterns on a regional scale. Using Ellenberg's indicator values for 1802 plant species in central Europe, we assess the patterns in regional species richness with respect to light, water, and mineral nutrient availability — three variables that strongly influence productivity. The results of this analysis are compared to those of published studies on smaller scales leading to the following conclusions: 1. On a regional scale in central Europe there is a hump-shaped relationship between soil nutrient supply and plant species richness within a given biome. 2. The peak in species richness for grasslands and wetlands occurs on nutrient-poor soils, while the peak for forests is on nutrient-rich soils. 3. Gradients in plant productivity controlled by different variables (i.e. water, nutrients, or disturbance) have dissimilar effects on plant species richness.

The leaf economics spectrum (LES) has revolutionized the way many ecologists think about quantifying plant ecological trade-offs. In particular, the LES has connected a clear functional trade-off (long-lived leaves with slow carbon capture vs. short-lived leaves with fast carbon capture) to a handful of easily measured leaf traits. Building on this work, community ecologists are now able to quickly assess species carbon-capture strategies, which may have implications for community-level patterns such as competition or succession. However, there are a number of steps in this logic that require careful examination, and a potential danger arises when interpreting leaf-trait variation among species within communities where trait relationships are weak. Using data from 22 diverse communities, we show that relationships among three common functional traits (photosynthetic rate, leaf nitrogen concentration per mass, leaf mass per area) are weak in communities with low variation in leaf life span (LLS), especially communities dominated by herbaceous or deciduous woody species. However, globally there are few LLS data sets for communities dominated by herbaceous or deciduous species, and more data are needed to confirm this pattern. The context-dependent nature of trait relationships at the community level suggests that leaf-trait variation within communities, especially those dominated by herbaceous and deciduous woody species, should be interpreted with caution.