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result(s) for
"Czaja, A. D."
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Laser–Raman imagery of Earth's earliest fossils
by
Schopf, J. William
,
Kudryavtsev, Anatoliy B.
,
Wdowiak, Thomas J.
in
Archaea
,
Bacteria
,
Brackish
2002
Unlike the familiar Phanerozoic history of life, evolution during the earlier and much longer Precambrian segment of geological time centred on prokaryotic microbes
1
. Because such microorganisms are minute, are preserved incompletely in geological materials, and have simple morphologies that can be mimicked by nonbiological mineral microstructures, discriminating between true microbial fossils and microscopic pseudofossil ‘lookalikes’ can be difficult
2
,
3
. Thus, valid identification of fossil microbes, which is essential to understanding the prokaryote-dominated, Precambrian 85% of life's history, can require more than traditional palaeontology that is focused on morphology. By combining optically discernible morphology with analyses of chemical composition, laser–Raman spectroscopic imagery of individual microscopic fossils provides a means by which to address this need. Here we apply this technique to exceptionally ancient fossil microbe-like objects, including the oldest such specimens reported from the geological record, and show that the results obtained substantiate the biological origin of the earliest cellular fossils known.
Journal Article
Periodic Carbon Flushing to Roots of Quercus rubra Saplings Affects Soil Respiration and Rhizosphere Microbial Biomass
by
Pati L. Vitt
,
Andrew D. Czaja
,
Funk, Jennifer L.
in
Agricultural soils
,
Animal and plant ecology
,
Animal, plant and microbial ecology
2002
Patterns of root/shoot carbon allocation within plants have been studied at length. The extent, however, to which patterns of carbon allocation from shoots to roots affect the timing and quantity of organic carbon release from roots to soil is not known. We employed a novel approach to study how natural short-term variation in the allocation of carbon to roots may affect rhizosphere soil biology. Taking advantage of the semi-determinate phenology of young northern red oak (Quercus rubra L.), we examined how pulsed delivery of carbon from shoots to roots affected dynamics of soil respiration as well as microbial biomass and net nitrogen mineralization in the rhizosphere. Young Q. rubra exhibit (1) clear switches in the amount of carbon allocated below-ground that are non-destructively detected simply by observing pulsed shoot growth above-ground, and (2) multiple switches in internal carbon allocation during a single growing season, ensuring our ability to detect short-term effects of plant carbon allocation on rhizosphere biology separate from longer-term seasonal effects. In both potted oaks and oaks rooted in soil, soil respiration varied inversely with shoot flush stage through several oak shoot flushes. In addition, upon destructive harvest of potted oaks, microbial biomass in the rhizosphere of saplings with actively flushing shoots was lower than microbial biomass in the rhizosphere of saplings with shoots that were not flushing. Given that plants have evolved with their roots in contact with soil microbes, known species-specific carbon allocation patterns within plants may provide insight into interactions among roots, symbionts, and free-living microbes in the dynamic soil arena.
Journal Article
Sampling of Jezero Crater Máaz Formation By Mars 2020 Perseverance Rover
2022
Collection of samples that could be returned to Earth from the floor of Jezero crater is a major goal of the Mars 2020 mission. Laboratory analyses of these will expand exploration of Jezero, a Noachian crater on Mars characterized by a delta–lake system with high potential for habitability. The samples will also be used to test current ideas about the early planetary evolution of Mars. The Perseverance rover has collected samples from two members of the Máaz formation, mapped in orbital images as the Crater floor fractured rough unit by [1]. Type localities of the Roubion and Rochette members have been targeted and abraded prior to sample collection. Here we summarize these sampling activities and the potential of sampling the Chal member of Máaz. A similar summary for samples collected from the Séítah formation is described in Hickman-Lewis et al. (this meeting).
Conference Proceeding
A phylogenetic view of low-level CAM in Pelargonium (Geraniaceae)
2003
Crassulacean acid metabolism (CAM) is common in several plant families and is often associated with succulence. Few studies have examined the occurrence of CAM from a phylogenetic perspective. The genus Pelargonium is promising for such a study because members are characterized by dramatic variation in growth form (including geophytes, shrubs, and stem succulents) and because growth form diversity is expressed to the greatest extent in a monophyletic group comprising 80% of Pelargonium species. This clade, predominantly from the winter rainfall region of southern Africa, likely proliferated in response to Miocene or Pliocene aridification. We present a survey for CAM across Pelargonium, emphasizing the winter rainfall clade. Dawn/dusk fluctuations in titratable acidity were examined in 41 species, with detailed measurements of carbon uptake and stomatal conductance under progressive water stress in four species. No species exhibited obligate CAM. When well-watered, most species exhibited stomatal conductances and acid fluctuations characteristic of C3photosynthesis, though some exhibited more pronounced increases in nocturnal acidity, suggesting CAM cycling. In four species examined during dry-down, water stress led to increased nighttime acid levels and decreased daytime stomatal conductance. Ultimately, stomata closed and external carbon uptake ceased, consistent with CAM idling. These results are discussed from the perspective of the evolution of CAM flexibility.
Journal Article
Images of the Earth's earliest fossils?
The criticism by Pasteris and Wopenka of our use of laser--Raman imagery to investigate the carbonaceous make-up of extremely ancient fossils focuses only on their Raman signature; however, our interpretation that the carbonaceous matter that makes up these specimens is biogenic is based on several lines of evidence, of which Raman spectroscopy is only one.
Journal Article
Recommended Maximum Temperature For Mars Returned Samples
by
Humayun, M
,
McLennan, S M
,
McSween, H Y
in
Amorphous materials
,
Chemical reduction
,
Cosmic rays
2016
The Returned Sample Science Board (RSSB) was established in 2015 by NASA to provide expertise from the planetary sample community to the Mars 2020 Project. The RSSB's first task was to address the effect of heating during acquisition and storage of samples on scientific investigations that could be expected to be conducted if the samples are returned to Earth. Sample heating may cause changes that could ad-versely affect scientific investigations. Previous studies of temperature requirements for returned mar-tian samples fall within a wide range (-73 to 50 degrees Centigrade) and, for mission concepts that have a life detection component, the recommended threshold was less than or equal to -20 degrees Centigrade. The RSSB was asked by the Mars 2020 project to determine whether or not a temperature requirement was needed within the range of 30 to 70 degrees Centigrade. There are eight expected temperature regimes to which the samples could be exposed, from the moment that they are drilled until they are placed into a temperature-controlled environment on Earth. Two of those - heating during sample acquisition (drilling) and heating while cached on the Martian surface - potentially subject samples to the highest temperatures. The RSSB focused on the upper temperature limit that Mars samples should be allowed to reach. We considered 11 scientific investigations where thermal excursions may have an adverse effect on the science outcome. Those are: (T-1) organic geochemistry, (T-2) stable isotope geochemistry, (T-3) prevention of mineral hydration/dehydration and phase transformation, (T-4) retention of water, (T-5) characterization of amorphous materials, (T-6) putative Martian organisms, (T-7) oxidation/reduction reactions, (T-8) (sup 4) He thermochronometry, (T-9) radiometric dating using fission, cosmic-ray or solar-flare tracks, (T-10) analyses of trapped gasses, and (T-11) magnetic studies.
Conference Proceeding
Contamination Knowledge Strategy for the Mars 2020 Sample-Collecting Rover
2017
The Mars 2020 rover will collect carefully selected samples of rock and regolith as it explores a potentially habitable ancient environment on Mars. Using the drill, rock cores and regolith will be collected directly into ultraclean sample tubes that are hermetically sealed and, later, deposited on the surface of Mars for potential return to Earth by a subsequent mission. Thorough characterization of any contamination of the samples at the time of their analysis will be essential for achieving the objectives of Mars returned sample science (RSS). We refer to this characterization as contamination knowledge (CK), which is distinct from contamination control (CC). CC is the set of activities that limits the input of contaminating species into a sample, and is specified by requirement thresholds. CK consists of identifying and characterizing both potential and realized contamination to better inform scientific investigations of the returned samples. Based on lessons learned by other sample return missions with contamination-sensitive scientific objectives, CC needs to be \"owned\" by engineering, but CK needs to be \"owned\" by science. Contamination present at the time of sample analysis will reflect the sum of contributions from all contamination vectors up to that point in time. For this reason, understanding the integrated history of contamination may be crucial for deciphering potentially confusing contaminant-sensitive observations. Thus, CK collected during the Mars sample return (MSR) campaign must cover the time period from the initiation of hardware construction through analysis of returned samples in labs on Earth. Because of the disciplinary breadth of the scientific objectives of MSR, CK must include a broad spectrum of contaminants covering inorganic (i.e., major, minor, and trace elements), organic, and biological molecules and materials.
Conference Proceeding
Cryptic terrestrial fungus-like fossils of the early Ediacaran Period
2021
The colonization of land by fungi had a significant impact on the terrestrial ecosystem and biogeochemical cycles on Earth surface systems. Although fungi may have diverged ~1500–900 million years ago (Ma) or even as early as 2400 Ma, it is uncertain when fungi first colonized the land. Here we report pyritized fungus-like microfossils preserved in the basal Ediacaran Doushantuo Formation (~635 Ma) in South China. These micro-organisms colonized and were preserved in cryptic karstic cavities formed via meteoric water dissolution related to deglacial isostatic rebound after the terminal Cryogenian snowball Earth event. They are interpreted as eukaryotes and probable fungi, thus providing direct fossil evidence for the colonization of land by fungi and offering a key constraint on fungal terrestrialization.
Fungi may have evolved up to 2.4 billion years ago, but it is unclear when they first colonized land. Here Gan and colleagues report filamentous Ediacaran microfossils from South China that may represent early terrestrial fungi.
Journal Article
Population-Based Epidemiologic Analysis of Acute Pyelonephritis
by
Czaja, Christopher A.
,
Stamm, Walter E.
,
Scholes, Delia
in
Acute Disease
,
Age groups
,
Analysis
2007
Background. Acute pyelonephritis is a potentially severe disease for which there are few population-based studies. We performed a population-based analysis of trends in the incidence, microbial etiology, antimicrobial resistance, and antimicrobial therapy of outpatient and inpatient pyelonephritis. Methods. A total of 4887 enrollees of Group Health Cooperative, based in Seattle, Washington, who received an International Classification of Diseases, Ninth Revision, Clinical Modification, diagnosis of acute pyelonephritis from 1997 through 2001 were identified using computerized records. Diagnoses were linked to urine culture and antibiotic prescription data. Case patients (n = 3236) included subjects who had received an inpatient or culture-confirmed outpatient diagnosis of acute pyelonephritis. Results. Among the female population, annual rates of outpatient and inpatient pyelonephritis were 12–13 cases per 10,000 population and 3–4 cases per 10,000 population, respectively; among the male population, the rates were 2–3 cases per 10,000 population and 1–2 cases per 10,000 population, respectively. Rates were relatively stable from year to year. Incidence was highest among young women, followed by infants and the elderly population. The ratio of outpatient to inpatient cases was highest among young women (ranging from 5 : 1 to 6 : 1). Escherichia coli caused 80% of cases of acute pyelonephritis in women and 70% of cases in men and was less dominant in older age groups. Among E. coli strains, the rate of ciprofloxacin resistance increased from 0.2% of isolates to 1.5% of isolates (P = .03), and the rate of trimethoprim-sulfamethoxazole resistance decreased from 25% of isolates to 13% of isolates (P
Journal Article
Autophagy is a gatekeeper of hepatic differentiation and carcinogenesis by controlling the degradation of Yap
2018
Activation of the Hippo pathway effector Yap underlies many liver cancers, however no germline or somatic mutations have been identified. Autophagy maintains essential metabolic functions of the liver, and autophagy-deficient murine models develop benign adenomas and hepatomegaly, which have been attributed to activation of the p62/Sqstm1-Nrf2 axis. Here, we show that Yap is an autophagy substrate and mediator of tissue remodeling and hepatocarcinogenesis independent of the p62/Sqstm1-Nrf2 axis. Hepatocyte-specific deletion of Atg7 promotes liver size, fibrosis, progenitor cell expansion, and hepatocarcinogenesis, which is rescued by concurrent deletion of Yap. Our results shed new light on mechanisms of Yap degradation and the sequence of events that follow disruption of autophagy, which is impaired in chronic liver disease.
Increased levels of the Yap oncoprotein stimulate liver growth and promote hepatocarcinogenesis. Here the authors show that hepatocyte-specific loss of
Atg7
in mice leads to decreased autophagic degradation of Yap and liver overgrowth, and further establish this association in human liver cancer tissues.
Journal Article
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