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result(s) for
"Düring Jonas"
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R1441G but not G2019S mutation enhances LRRK2 mediated Rab10 phosphorylation in human peripheral blood neutrophils
by
Mondragón-Rezola Elisabet
,
Alessi, Dario R
,
Valldeoriola Francesc
in
Immunoblotting
,
Kinases
,
Leukocytes (neutrophilic)
2021
Heterozygous gain-of-kinase function variants in LRRK2 (leucine-rich repeat kinase 2) cause 1–2% of all cases of Parkinson’s disease (PD) albeit with incomplete and age-dependent penetrance. All pathogenic LRRK2 mutations reside within the two catalytic domains of LRRK2—either in its kinase domain (e.g. G2019S) with modest effect or its ROC-COR GTPase domain (e.g. R1441G/H) with large effect on LRRK2 kinase activity. We have previously reported assays to interrogate LRRK2 kinase pathway activity in human bio-samples measuring phosphorylation of its endogenous substrate Rab10, that mirrors LRRK2 kinase activation status. Here, we isolated neutrophils from fresh peripheral blood from 101 participants including 42 LRRK2 mutation carriers (21 with the G2019S and 21 with the R1441G mutations), 27 patients with idiopathic PD, and 32 controls. Using a dual approach, LRRK2 dependent Rab10 phosphorylation at Threonine 73 (pRab10Thr73) was measured by quantitative multiplexed immunoblotting for pRab10Thr73/total Rab10 as well as targeted mass-spectrometry for absolute pRab10Thr73 occupancy. We found a significant over fourfold increase in pRab10Thr73 phosphorylation in carriers of the LRRK2 R1441G mutation irrespective of clinical disease status. The effect of the LRRK2 G2019S mutation did not reach statistical significance. Furthermore, we show that LRRK2 phosphorylation at Serine 935 is not a marker for LRRK2 kinase activity in human neutrophils. When analysing pRab10Thr73 phosphorylation in post-mortem brain samples, we observed overall high variability irrespective of clinical and LRRK2 mutation status and attributed this mainly to the adverse effect of the peri- and post-mortem period on the stability of posttranslational modifications such as protein phosphorylation. Overall, in vivo LRRK2 dependent pRab10Thr73 phosphorylation in human peripheral blood neutrophils is a specific, robust and promising biomarker for significant LRRK2 kinase hyperactivation, as with the LRRK2 R1441G mutation. Additional readouts and/or assays may be needed to increase sensitivity to detect modest LRRK2 kinase activation, as with the LRRK2 G2019S mutation. Our assays could be useful for patient stratification and target engagement studies for LRRK2 kinase inhibitors.
Journal Article
XplAInable: Explainable AI Smoke Detection at the Edge
by
Gawantka, Falko
,
Reichenbach, Marc
,
During, Jonas
in
Artificial intelligence
,
Automation
,
Case studies
2024
Wild and forest fires pose a threat to forests and thereby, in extension, to wild life and humanity. Recent history shows an increase in devastating damages caused by fires. Traditional fire detection systems, such as video surveillance, fail in the early stages of a rural forest fire. Such systems would see the fire only when the damage is immense. Novel low-power smoke detection units based on gas sensors can detect smoke fumes in the early development stages of fires. The required proximity is only achieved using a distributed network of sensors interconnected via 5G. In the context of battery-powered sensor nodes, energy efficiency becomes a key metric. Using AI classification combined with XAI enables improved confidence regarding measurements. In this work, we present both a low-power gas sensor for smoke detection and a system elaboration regarding energy-efficient communication schemes and XAI-based evaluation. We show that leveraging edge processing in a smart way combined with buffered data samples in a 5G communication network yields optimal energy efficiency and rating results.
Journal Article
Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1
by
Torres, Camilo
,
Steinchen, Wieland
,
Toplak, Julia J.
in
631/1647/296
,
631/337/458/582
,
631/45/173
2024
Ubiquitin ligases (E3s) are pivotal specificity determinants in the ubiquitin system by selecting substrates and decorating them with distinct ubiquitin signals. However, structure determination of the underlying, specific E3-substrate complexes has proven challenging owing to their transient nature. In particular, it is incompletely understood how members of the catalytic cysteine-driven class of HECT-type ligases (HECTs) position substrate proteins for modification. Here, we report a cryogenic electron microscopy (cryo-EM) structure of the full-length human HECT HACE1, along with solution-based conformational analyses by small-angle X-ray scattering and hydrogen–deuterium exchange mass spectrometry. Structure-based functional analyses in vitro and in cells reveal that the activity of HACE1 is stringently regulated by dimerization-induced autoinhibition. The inhibition occurs at the first step of the catalytic cycle and is thus substrate-independent. We use mechanism-based chemical crosslinking to reconstitute a complex of activated, monomeric HACE1 with its major substrate, RAC1, determine its structure by cryo-EM and validate the binding mode by solution-based analyses. Our findings explain how HACE1 achieves selectivity in ubiquitinating the active, GTP-loaded state of RAC1 and establish a framework for interpreting mutational alterations of the HACE1–RAC1 interplay in disease. More broadly, this work illuminates central unexplored aspects in the architecture, conformational dynamics, regulation and specificity of full-length HECTs.
Using cryo-EM, SAXS and HDX–MS, the authors mechanistically delineate dimerization-induced autoinhibition of the HECT-type ligase HACE1 and the selectivity of the active ligase monomer for GTP-bound RAC1.
Journal Article
International celebs root for desi khana Bombay Times
by
naan My daughter who doesnt eat anything would say she wanted Indian food My whole family loves itCRAVING CARBS GORGE ON IDLIS SAYS MADONNATurns out the Material Girl is a fangirl of south Indian food The singer had said in an earlier interview On my visit to India I had learnt how idlis could help you in losing weight
,
dosa I like dosaTNN
,
eat it I really love that Eating it with curry God I want to eat it so bad Itd be delicious Im hungry Im starving Please dont talk about food I beg youPAUL RUDD OFTEN TUCKS INTO A GOOD BIRYANIEarlier this year Paul Rudd professed his love for Indian khaana
in
Food
2023
Newspaper Article