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3 result(s) for "Dang, Xuanmin"
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Glycinebetaine Biosynthesis in Response to Osmotic Stress Depends on Jasmonate Signaling in Watermelon Suspension Cells
Glycinebetaine is an important non-toxic osmoprotectant, which is accumulated in higher plants under various stresses. The biosynthesis of glycinebetaine achieved via is a two-step oxidation from choline and betaine aldehyde, catalyzed by choline monooxygenase (CMO) and betaine aldehyde dehydrogenase (BADH), respectively. Up-regulated gene expression of BADH and CMO induced by stress is clearly observed, but the signal transduction is poorly understood. Here, glycinebetaine accumulation in response to osmotic stress and growth recovery induced by exogenous glycinebetaine were observed in a watermelon cell line. When tracing back to the genome sequence of watermelon, it shows that there exists only one member of or corresponding to glycinebetaine biosynthesis. Both genes harbor a CGTCA-motif in their promoter region which is involved in methyl jasmonate (MeJA)-responsiveness. Amongst MeJA, Ethephon, abscisic acid (ABA), and salicylic acid (SA), MeJA was most effective in gene inducing the expression of and , and the accumulation of glycinebetaine could also reach an amount comparable to that after osmotic stress by mannitol. Moreover, when ibuprofen (IBU), a JA biosynthesis inhibitor, was pre-perfused into the cells before osmotic stress, glycinebetaine accumulation was suppressed significantly. Interestingly, newly grown cells can keep a high content of glycinebetaine when they are sub-cultured from osmotic stressed cells. This study suggests that osmotic stress induced glycinebetaine biosynthesis occurs via JA signal transduction and not only plays a key role in osmotic stress resistance but also contributes to osmotic stress hardening.
A major QTL identification and candidate gene analysis of watermelon fruit cracking using QTL-seq and RNA-seq
Fruit cracking decreases the total production and the commercial value of watermelon. The molecular mechanisms of fruit cracking are unknown. In this study, 164 recombinant inbred lines (RILs) of watermelon, derived from the crossing of the WQ1 (cracking-sensitive) and WQ2 (cracking-tolerant) lines, were sequenced using specific length amplified fragment sequencing (SLAF-seq). A high-density genetic linkage map was constructed with 3,335 markers spanning 1,322.74 cM, at an average 0.40 cM across whole-genome flanking markers. The cracking tolerance capacity (CTC), depth of fruit cracking (DFC), rind thickness (RT), and rind hardness (RH) were measured for quantitative trait locus (QTL) analysis. Of the four traits analyzed, one major QTL with high phenotypic variation (41.04%–61.37%) was detected at 76.613–76.919 cM on chromosome 2, which contained 104 annotated genes. Differential gene expression analysis with RNA sequencing (RNA-seq) data between the two parents identified 4,508 differentially expressed genes (DEGs). Comparison of the genes between the QTL region and the DEGs obtained eight coexisting genes. Quantitative real-time PCR (qRT-PCR) analysis revealed that these genes were significant differentially expressed between the two parents. These results provide new insights into the identification of QTLs or genes and marker-assisted breeding in watermelon.
Genetic Variation Analysis of Watermelon Genomes with Different Ploidy
120 pairs of SSR primers and 63 pairs of In Del primers were used to determine genetic variation among diploid,triploid and tetraploid watermelon genomes. The results showed that 113 pairs of SSR primers and 63 pairs of In Del primers could be successfully amplified.There was slight difference between diploid and tetraploid watermelon genomes in the aspect of SSR. Among 120 pairs of SSR primers,2 showed obvious polymorphism with polymorphic rate of 1. 67%,corresponding to 34047313-34063581 intervals on chromosome 9. 1 gene encoding zinc finger protein was predicted in polymorphic interval which could regulate the expression of other genes at the level of transcription and translation. There was no significant difference in the aspect of In Del among watermelon genomes with different ploidy which indicated that the genomic insertion and deletion site was not changed before and after chromosome doubling. The results indicated that watermelon genomic structure had no significant change in the process of polyploidization. The difference of traits between tetraploidy and diploid parent might be closely related with epigenetic regulation. This study could provide scientific basis for ploidy breeding,new variety improvement and germplasm innovation.