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result(s) for
"Das, Arpita"
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Micro and Nanoencapsulation of Natural Colors: a Holistic View
2021
The applications of natural plant pigments are growing rapidly with the increasing awareness of the negative health impacts of synthetic colorants. Additionally, natural pigments possess various biological properties and therapeutic activities. But their functions are hindered by their poor bioavailability, bioaccessibility, low absorption rate, and susceptibility to destructive environmental changes during processing and delivery. Encapsulation is a method of entrapment of bioactive ingredients within suitable carriers to provide protection and for the appropriate delivery into the targeted site by the formation of particles or capsules in micrometer or nanometer scales. Encapsulation imparts several benefits including improved thermal and chemical stability, preserves or masks flavor, taste, or aroma, controlled and targeted release, and enhanced bioavailability of pigments. Micro and nanoencapsulation of pigments will provide extensive and intensive platforms for the development of a new stage in the production of novel and healthy foods. This review mainly focuses on the advanced developments in the fields of micro and nanoencapsulation of pigments.
Journal Article
In-silico study of biotic and abiotic stress-related transcription factor binding sites in the promoter regions of rice germin-like protein genes
by
Sharma, Rishu
,
Das, Arpita
,
Pramanik, Krishnendu
in
Abiotic stress
,
Agricultural biotechnology
,
Barley
2019
Germin-like proteins (GLPs) are involved in biotic and abiotic stress tolerance in different plant species. Rice (Oryza sativa L.) genome contains about 40 GLP family member proteins in nine chromosomes. Although some of the rice GLP (OsGLP) promoters have been studied through in silico analysis as well as experimentally, studies regarding the distribution pattern of the biotic and abiotic stress associated transcription factor binding sites (TFbs) in the promoter regions of OsGLP genes have not been attempted thoroughly. Several transcription factors (TFs) namely NAC, WRKY, bHLH, bZIP, MYB and AP2/ERF act as major TFs concerned with biotic as well as abiotic stress responses across various plant species. In the present study the in silico analysis was carried out using the 1.5 kilobases (kb) promoter regions from 40 different OsGLP genes for the presence of NAC, WRKY, bHLH, bZIP, MYB and AP2/ERF TFbs in it. Among various OsGLP gene promoters, OsGLP8-11 was found to contain highest number of tested TFbs in the promoter region whereas the promoter region of OsGLP5-1 depicted least amount of TFbs. Phylogenetic study of promoter regions of different OsGLP genes revealed four different clades. Our analyses could reveal the evolutionary significance of different OsGLP gene promoters. It can be presumed from the present findings as well as previous reports that OsGLP gene duplications and subsequent variations in the TFbs in OsGLP gene promoter regions might be the consequences of neofunctionalization of OsGLP genes and their promoters for biotic and abiotic stress tolerance in rice.
Journal Article
Current Perspectives on Introgression Breeding in Food Legumes
by
Agrawal, Shiv Kumar
,
Das, Arpita
,
Pratap, Aditya
in
Agribusiness
,
Agricultural production
,
breeding populations
2021
Food legumes are important for defeating malnutrition and sustaining agri-food systems globally. Breeding efforts in legume crops have been largely confined to the exploitation of genetic variation available within the primary genepool, resulting in narrow genetic base. Introgression as a breeding scheme has been remarkably successful for an array of inheritance and molecular studies in food legumes. Crop wild relatives (CWRs), landraces, and exotic germplasm offer great potential for introgression of novel variation not only to widen the genetic base of the elite genepool for continuous incremental gains over breeding cycles but also to discover the cryptic genetic variation hitherto unexpressed. CWRs also harbor positive quantitative trait loci (QTLs) for improving agronomic traits. However, for transferring polygenic traits, “specialized population concept” has been advocated for transferring QTLs from CWR into elite backgrounds. Recently, introgression breeding has been successful in developing improved cultivars in chickpea (Cicer arietinum), pigeonpea (Cajanus cajan), peanut (Arachis hypogaea), lentil (Lens culinaris), mungbean (Vigna radiata), urdbean (Vigna mungo), and common bean (Phaseolus vulgaris). Successful examples indicated that the usable genetic variation could be exploited by unleashing new gene recombination and hidden variability even in late filial generations. In mungbean alone, distant hybridization has been deployed to develop seven improved commercial cultivars, whereas in urdbean, three such cultivars have been reported. Similarly, in chickpea, three superior cultivars have been developed from crosses between C. arietinum and Cicer reticulatum. Pigeonpea has benefited the most where different cytoplasmic male sterility genes have been transferred from CWRs, whereas a number of disease-resistant germplasm have also been developed in Phaseolus. As vertical gene transfer has resulted in most of the useful gene introgressions of practical importance in food legumes, the horizontal gene transfer through transgenic technology, somatic hybridization, and, more recently, intragenesis also offer promise. The gains through introgression breeding are significant and underline the need of bringing it in the purview of mainstream breeding while deploying tools and techniques to increase the recombination rate in wide crosses and reduce the linkage drag. The resurgence of interest in introgression breeding needs to be capitalized for development of commercial food legume cultivars.
Journal Article
A comprehensive review on strategies for replacing saturated fats in bakery products
2024
The existing approaches for reducing the amount of saturated fat in baked goods while preserving customer approval are examined critically in this review article. Butter and shortening are high in saturated fats, which are known to increase the risk of cardiovascular disease. The main goal of reformulation activities is to replace unhealthy ingredients with plant-based fats, vegetable oils, and seed oils. Novel approaches to baking, such as the use of nanoemulsions, oleogels, and hydrogels have the potential to produce desired textures while maintaining fat reduction. However, striking a balance between these objectives is difficult since cutting saturated fat can have a detrimental effect on sensory qualities. This review explores strategies for improving consumer acceptability by modifying recipes (replacement of fat) and effectively communicating the health benefits. The essay also looks at labelling laws and how government programs might help promote better bakery options.
Journal Article
Genome-wide identification, characterization and expression profiling of purple acid phosphatases under variable phosphorus regimes in lentil (Lens culinaris Medik.)
by
Banerjee, Joydeep
,
Chakraborty, Ankita
,
Das, Arpita
in
Acid Phosphatase - chemistry
,
Acid Phosphatase - genetics
,
Acid Phosphatase - metabolism
2025
Background
Purple acid phosphatases, an important sub-class of metallo-phosphoesterase, play a key role in the uptake and homeostasis of phosphorus in plants, especially under phosphorus limited conditions. Phosphorus deficiency in legumes leads to an impaired growth, poor nodulation and a significant decline in yield potential.
Results
In this study, 22 putative purple acid phosphatase genes in
Lens culinaris
(
LcPAP
s) were identified, distributed across seven chromosomes with chromosome 4 harbouring the highest number.
In-silico
analysis revealed their gene structures, physico-chemical properties, structures of the PAP proteins, and predicted sub-cellular localization. Most of the LcPAPs were found to possess a signal peptide suggesting their involvement in the secretory pathway, whereas LcPAP3 lacking any signal peptide was uniquely localized in the nucleus. Considering molecular weights, the LcPAPs clustered into three groups and were classified in five out of six clades in a phylogenetic tree constructed with
PAPs
from soyabean, rice and
Arabidopsis
. Synteny analysis of
LcPAPs
revealed the highest conservation with soyabean followed by
Arabidopsis
and least with rice, consistent with the lineage divergence of dicots and monocots that occurred million years ago. Promoter analysis of the
LcPAP
s revealed the presence of multiple cis elements associated with stress responsive transcription factors, including PHR1, a key regulator of phosphorus starvation response. Docking studies of the protein with ligands like para-nitrophenyl phosphate (pNPP) and phytic acid revealed the involvement of the conserved motifs and different covalent bonds in protein–ligand interaction. Gene expression analysis under differential phosphorus regimes revealed root specific upregulation of
LcPAP20
, while constitutive upregulation in both root and shoot tissues of
LcPAP4
annotated with oxidoreductase and phosphatase enzyme activity under low as well as high phosphorus conditions as compared to control. In contrast,
LcPAP9
predicted to possess dual phosphatase-phytase activity was highly upregulated in the shoots under phosphorus deficient condition as compared to phosphorus sufficiency.
Conclusions
These findings provide foundational insights into the functional diversification of
LcPAPs
on an intricate molecular level, and might pave the way of identifying key regulatory genes of lentil involved in phosphorus homeostasis. Further in-depth bioinformatics study on LcPAPs with their two potential interactors has unravelled their potential role and binding efficacies.
Journal Article
Immunomodulatory Role of the Antimicrobial LL-37 Peptide in Autoimmune Diseases and Viral Infections
by
Madonna, Stefania
,
Girolomoni, Giampiero
,
Das, Arpita
in
Antiinfectives and antibacterials
,
Antimicrobial peptides
,
Arthritis
2020
Antimicrobial peptides (AMPs) are produced by neutrophils, monocytes, and macrophages, as well as epithelial cells, and are an essential component of innate immunity system against infection, including several viral infections. AMPs, in particular the cathelicidin LL-37, also exert numerous immunomodulatory activities by inducing cytokine production and attracting and regulating the activity of immune cells. AMPs are scarcely expressed in normal skin, but their expression increases when skin is injured by external factors, such as trauma, inflammation, or infection. LL-37 complexed to self-DNA acts as autoantigen in psoriasis and lupus erythematosus (LE), where it also induces production of interferon by plasmocytoid dendritic cells and thus initiates a cascade of autocrine and paracrine processes, leading to a disease state. In these disorders, epidermal keratinocytes express high amounts of AMPs, which can lead to uncontrolled inflammation. Similarly, LL-37 had several favorable and unfavorable roles in virus replication and disease pathogenesis. Targeting the antiviral and immunomodulatory functions of LL-37 opens a new approach to limit virus dissemination and the progression of disease.
Journal Article
An overview on application of fat-replacers in different dairy products and its health implications
2025
The present study provides a thorough analysis of the vital role fats play in human health as well as their noteworthy effects on the flavor and functionality of dairy products. It draws attention to the growing need for healthier food options around the world as a result of the rise in chronic illnesses linked to diets with heavy fat content. The development and use of fat replacers substances intended to replicate the qualities of fat while lowering caloric content-in a variety of dairy products is addressed in response. Along with an analysis of their functional characteristics, such as mouthfeel, texture, and stability, fat substitutes are classified based on their composition into three major groups: lipid-based, protein-based, and carbohydrate-based. The impact of fat reduction on the qualitative features of dairy products, including cheese, ice cream, yogurt, and chocolate, is further examined in the article, which highlights the necessity of cautious formulation to preserve sensory qualities. The conclusion emphasizes how customers' requests for lower-caloric options can be met by fat alternatives without compromising texture or flavor. It calls for further research on the development of cutting-edge fat substitute technologies that are customized to match certain dietary requirements. Overall, the study contributes to the understanding of how fat replacers can play a pivotal role in enhancing the nutritional profile and consumer acceptability.
Journal Article
Cereal based functional food of Indian subcontinent: a review
2012
Due to constant health awareness and readily available information on usefulness of different diet and their direct link with health, the demand of functional food is increasing day by day. The concept of functional foods includes foods or food ingredients that exert a beneficial effect on host health and/or reduce the risk of chronic disease beyond basic nutritional functions. Increasing awareness of consumer health and interest in functional foods to achieve a healthy lifestyle has resulted in the need for food products with versatile health-benefiting properties. Cereal- and cereal component-based food products offer opportunities to include probiotics, prebiotics, and fibers in the human diet. Various growth studies using probiotic Lactic acid bacteria on cereal-based substrates and utilization of whole grain or components as high-fiber foods in developing novel food products lend support to the idea that cereal-based media may well be good probiotic carriers. It is essential that science and traditional knowledge should go together to find mutually beneficial results. In the Indian subcontinent, making use of fermented food and beverages using local food crops and other biological resources are very common. But the nature of the products and the base material vary from region to region.
Journal Article
Genome‑wide identification of CAMTA gene family members in rice (Oryza sativa L.) and in silico study on their versatility in respect to gene expression and promoter structure
by
Dasgupta Somdeb Bose
,
Nandi Debarati
,
Gain Hena
in
Binding sites
,
Calcium-binding protein
,
Calmodulin
2022
Abstract The calmodulin-binding transcription activator (CAMTA) is a family of transcriptional factors containing a cluster of calmodulin-binding proteins that can activate gene regulation in response to stresses. The presence of this family of genes has been reported earlier, though, the comprehensive analyses of rice CAMTA (OsCAMTA) genes, their promoter regions, and the proteins were not deliberated till date. The present report revealed the existence of seven CAMTA genes along with their alternate transcripts in five chromosomes of rice (Oryza sativa) genome. Phylogenetic trees classified seven CAMTA genes into three clades indicating the evolutionary conservation in gene structure and their association with other plant species. The in silico study was carried out considering 2 kilobases (kb) promoter regions of seven OsCAMTA genes regarding the distribution of transcription factor binding sites (TFbs) of major and plant-specific transcription factors whereas OsCAMTA7a was identified with highest number of TFbs, while OsCAMTA4 had the lowest. Comparative modelling, i.e., homology modelling, and molecular docking of the CAMTA proteins contributed the thoughtful comprehension of protein 3D structures and protein–protein interaction with probable partners. Gene ontology annotation identified the involvement of the proteins in biological processes, molecular functions, and localization in cellular components. Differential gene expression study gave an insight on functional multiplicity to showcase OsCAMTA3b as most upregulated stress-responsive gene. Summarization of the present findings can be interpreted that OsCAMTA gene duplication, variation in TFbs available in the promoters, and interactions of OsCAMTA proteins with their binding partners might be linked to tolerance against multiple biotic and abiotic cues.
Journal Article
Current Perspectives on Reducing the β-ODAP Content and Improving Potential Agronomic Traits in Grass Pea (Lathyrus sativus L.)
by
Agrawal, Shiv Kumar
,
Das, Arpita
,
Parihar, Ashok
in
Agricultural production
,
Agronomy
,
Amino acids
2021
Grass pea is well-established as one of the most resilient and versatile crops that can thrive under extreme climatic circumstances such as cold, heat, drought, salt-affected soils, submergence, and excessive rainfall along with resistance to several diseases and pests. However, despite the awareness of its virtues, its cultivation globally has decreased recently owing to the presence of a neurotoxin, β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP), in the seedlings and seeds of this legume, which has been reported to cause neurolathyrism, a non-reversible neurological disorder in humans and animals. Significant repositories of Lathyrus germplasm are available across countries that have provided access to a wide range of agro-morphological traits as well as the low β ODAP content. Efforts have been made worldwide to use these germplasms for the genetic enhancement of grass pea to make this food safe for human consumption. Efforts on molecular breeding of this crop are also lagging. However, during the last decade, the research scenario has changed with some efforts being made toward improving this climate resilient pulse in terms of genomic resources. Molecular markers have also been used to evaluate the interspecific diversity as well as the phylogenetic relationship among the species and mapping studies. Intron-targeted amplified polymorphic, genomic simple sequence repeat, resistance genes analogs, and disease resistance markers developed for other legume species have been successfully cross-amplified in grass pea. Transcriptomic studies have recently been undertaken on grass pea by deploying several second-generation sequencing techniques. In addition, a few studies have attempted to unveil the genes and the underlying mechanism conferring biotic and abiotic stress or regulating the pathway of β-ODAP in grass pea. Proteomics has accelerated the identification studies on differential proteomes in response to salinity and low-temperature stress conditions for unveiling the common signaling pathways involved in mitigating these abiotic stresses and in discovering differentially regulated proteins. In grass pea, a metabolomics approach has been used to identify the metabolic processes associated with β-ODAP synthesis. Genome sequencing of grass pea is under way which is expected to be vital for whole-genome re-sequencing and gene annotation toward the identification of genes with novel functions. Recently, a draft genome sequence of grass pea was developed, and some efforts are underway to re-sequence a diverse panel of grass pea comprising 384 germplasm lines. Owing to the scantiness of a successful transformation protocol, research on the application of modern approaches of genome editing like the Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) or CRISPR-associated protein 9 (CRISPR/Cas9) system for the engineering of signaling pathways or regulatory mechanisms seeks immediate attention to reduce the β-ODAP content in seeds and to improve the potential agronomic traits in grass pea.
Journal Article