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result(s) for
"David, Lisa K."
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Altered mGluR5-Homer scaffolds and corticostriatal connectivity in a Shank3 complete knockout model of autism
2016
Human neuroimaging studies suggest that aberrant neural connectivity underlies behavioural deficits in autism spectrum disorders (ASDs), but the molecular and neural circuit mechanisms underlying ASDs remain elusive. Here, we describe a complete knockout mouse model of the autism-associated
Shank3
gene, with a deletion of exons 4–22 (Δe4–22). Both mGluR5-Homer scaffolds and mGluR5-mediated signalling are selectively altered in striatal neurons. These changes are associated with perturbed function at striatal synapses, abnormal brain morphology, aberrant structural connectivity and ASD-like behaviour.
In vivo
recording reveals that the cortico-striatal-thalamic circuit is tonically hyperactive in mutants, but becomes hypoactive during social behaviour. Manipulation of mGluR5 activity attenuates excessive grooming and instrumental learning differentially, and rescues impaired striatal synaptic plasticity in Δe4–22
−/−
mice. These findings show that deficiency of Shank3 can impair mGluR5-Homer scaffolding, resulting in cortico-striatal circuit abnormalities that underlie deficits in learning and ASD-like behaviours. These data suggest causal links between genetic, molecular, and circuit mechanisms underlying the pathophysiology of ASDs.
SHANK3 mutations have been linked to autism spectrum disorders, although the underlying mechanisms remain unclear. Here, the authors generate a complete knockout Shank3 mouse model, identifying ASD-like behaviours associated with impaired mGluR5-Homer scaffolding and abnormal brain connectivity.
Journal Article
Utilizing a novel fecal sampling method to examine resistance of the honey bee (Apis mellifera) gut microbiome to a low dose of tetracycline
by
Gregory, Casey L.
,
Bradford, Emma L.
,
Haak, David C.
in
Animals
,
Anti-Bacterial Agents - pharmacology
,
Antibiotic resistance
2025
Disruption of host-associated microbial communities can have detrimental impacts on host health. However, the capacity of individual host-associated microbial communities to resist disturbance has not been well defined. Using a novel fecal sampling method for honey bees ( Apis mellifera ), we examined the resistance of the honey bee gut microbiome to disruption from a low dose of the antibiotic, tetracycline (4.5 μg). Prior to the experiment, bacterial communities from fecal samples were compared to communities from dissected whole guts of the same individuals to ensure fecal samples accurately represented the gut microbiome. Fecal samples were collected from lab-caged honey bees prior to, and five days after, tetracycline exposure to assess how antibiotic disturbance affected the communities of individuals. We used metrics of alpha and beta diversity calculated from 16S rRNA gene amplicon sequences to compare gut community structure. Low dose tetracycline exposure did not consistently change honey bee gut microbiome structure, but there was individual variation in response to exposure and specific taxa (one ASV assigned to Lactobacillus kunkeei and one ASV in the genus Bombella ) were differentially abundant following tetracycline treatment. To assess whether individual variation could be influenced by the presence of tetracycline resistance genes, we quantified the abundance of tet(B) and tet(M) with qPCR. The abundance of tet(M) prior to tetracycline treatment was negatively correlated with change in community membership, assessed by difference in Jaccard dissimilarity over the five-day experiment. Our results suggest that the honey bee gut microbiome has some ability to resist or recover from antibiotic-induced change, specific taxa may vary in their susceptibility to tetracycline exposure, and antibiotic resistance genes may contribute to gut microbiome resistance.
Journal Article
Brain-wide electrical spatiotemporal dynamics encode reward anticipation
by
Burrus, Caley
,
Soderling, Scott
,
Thomas, Gwenaelle
in
Animal models
,
Brain architecture
,
Cortex
2019
Anticipation of an upcoming stimulus induces neural activity across cortical and subcortical regions and influences subsequent behavior. Nevertheless, the network mechanism whereby the brain integrates this information to signal the anticipation of rewards remains relatively unexplored. Here we employ multi-circuit electrical recordings from six brain regions as mice perform a sample-to-match task in which reward anticipation is operationalized as their progress towards obtaining a potential reward. We then use machine learning to discover the naturally occurring network patterns that integrate this neural activity across timescales. Only one of the networks that we uncovered signals responses linked to reward anticipation, specifically relative proximity and reward magnitude. Activity in this Electome (electrical functional connectivity) network is dominated by theta oscillations leading from prelimbic cortex and striatum that converge on ventral tegmental area, and by beta oscillations leading from striatum that converge on prelimbic cortex. Network activity is also synchronized with brain-wide cellular firing. Critically, this network generalizes to new groups of healthy mice, as well as a mouse line that models aberrant neural circuitry observed in brain disorders that show altered reward anticipation. Thus, our findings reveal the network-level architecture whereby the brain integrates spatially distributed activity across timescales to signal reward anticipation.
Experimental approaches to conservation biology
2004
We are living in the early stages of a looming worldwide extinction crisis. Abundant evidence shows that the current rate of species extinctions is nearing its highest level since the asteroid collision 65 million years ago, and that humans are largely responsible. This book addresses the urgent need to understand and find solutions to this crisis. Written by an international team of contributors who are among the best-known and most active experimental biologists working in the field of conservation biology today, it provides a unique approach by focusing on individual species rather than whole plant and animal communities. Emphasizing throughout how conservation biology can benefit from an experimental approach, the book looks at a wide range of terrestrial and aquatic species—from giant pandas and tree snails to sea turtles and Steller sea lions—and demonstrates what can be done both to preserve rare species and to combat invasive organisms. Finally, contributors show how we can bridge the gap between policy makers and research scientists in order to develop lasting solutions to these problems.
The effects of climate extremes on global agricultural yields
by
Frieler, Katja
,
Meinshausen, Nicolai
,
Alexander, Lisa V
in
Agricultural production
,
agriculture
,
Algorithms
2019
Climate extremes, such as droughts or heat waves, can lead to harvest failures and threaten the livelihoods of agricultural producers and the food security of communities worldwide. Improving our understanding of their impacts on crop yields is crucial to enhance the resilience of the global food system. This study analyses, to our knowledge for the first time, the impacts of climate extremes on yield anomalies of maize, soybeans, rice and spring wheat at the global scale using sub-national yield data and applying a machine-learning algorithm. We find that growing season climate factors-including mean climate as well as climate extremes-explain 20%-49% of the variance of yield anomalies (the range describes the differences between crop types), with 18%-43% of the explained variance attributable to climate extremes, depending on crop type. Temperature-related extremes show a stronger association with yield anomalies than precipitation-related factors, while irrigation partly mitigates negative effects of high temperature extremes. We developed a composite indicator to identify hotspot regions that are critical for global production and particularly susceptible to the effects of climate extremes. These regions include North America for maize, spring wheat and soy production, Asia in the case of maize and rice production as well as Europe for spring wheat production. Our study highlights the importance of considering climate extremes for agricultural predictions and adaptation planning and provides an overview of critical regions that are most susceptible to variations in growing season climate and climate extremes.
Journal Article
Scientists’ warning to humanity: microorganisms and climate change
by
Webster, Nicole S
,
Weaver, Scott C
,
Britt Koskella
in
Anthropocene
,
Anthropogenic factors
,
Climate change
2019
In the Anthropocene, in which we now live, climate change is impacting most life on Earth. Microorganisms support the existence of all higher trophic life forms. To understand how humans and other life forms on Earth (including those we are yet to discover) can withstand anthropogenic climate change, it is vital to incorporate knowledge of the microbial ‘unseen majority’. We must learn not just how microorganisms affect climate change (including production and consumption of greenhouse gases) but also how they will be affected by climate change and other human activities. This Consensus Statement documents the central role and global importance of microorganisms in climate change biology. It also puts humanity on notice that the impact of climate change will depend heavily on responses of microorganisms, which are essential for achieving an environmentally sustainable future.
Journal Article
Human DECR1 is an androgen-repressed survival factor that regulates PUFA oxidation to protect prostate tumor cells from ferroptosis
2020
Fatty acid β-oxidation (FAO) is the main bioenergetic pathway in human prostate cancer (PCa) and a promising novel therapeutic vulnerability. Here we demonstrate therapeutic efficacy of targeting FAO in clinical prostate tumors cultured ex vivo, and identify DECR1, encoding the rate-limiting enzyme for oxidation of polyunsaturated fatty acids (PUFAs), as robustly overexpressed in PCa tissues and associated with shorter relapse-free survival. DECR1 is a negatively-regulated androgen receptor (AR) target gene and, therefore, may promote PCa cell survival and resistance to AR targeting therapeutics. DECR1 knockdown selectively inhibited β-oxidation of PUFAs, inhibited proliferation and migration of PCa cells, including treatment resistant lines, and suppressed tumor cell proliferation and metastasis in mouse xenograft models. Mechanistically, targeting of DECR1 caused cellular accumulation of PUFAs, enhanced mitochondrial oxidative stress and lipid peroxidation, and induced ferroptosis. These findings implicate PUFA oxidation via DECR1 as an unexplored facet of FAO that promotes survival of PCa cells.
Journal Article
Dual targeting of p53 and c-MYC selectively eliminates leukaemic stem cells
2016
Chronic myeloid leukaemia (CML) arises after transformation of a haemopoietic stem cell (HSC) by the protein-tyrosine kinase BCR–ABL. Direct inhibition of BCR–ABL kinase has revolutionized disease management, but fails to eradicate leukaemic stem cells (LSCs), which maintain CML. LSCs are independent of BCR–ABL for survival, providing a rationale for identifying and targeting kinase-independent pathways. Here we show—using proteomics, transcriptomics and network analyses—that in human LSCs, aberrantly expressed proteins, in both imatinib-responder and non-responder patients, are modulated in concert with p53 (also known as TP53) and c-MYC regulation. Perturbation of both p53 and c-MYC, and not BCR–ABL itself, leads to synergistic cell kill, differentiation, and near elimination of transplantable human LSCs in mice, while sparing normal HSCs. This unbiased systems approach targeting connected nodes exemplifies a novel precision medicine strategy providing evidence that LSCs can be eradicated.
Leukaemic stem cells (LSCs) are responsible for BCR–ABL-driven chronic myeloid leukaemia relapse; here, p53 and MYC signalling networks are shown to regulate LSCs concurrently, and targeting both these pathways has a synergistic effect in managing the disease.
Dual targeting of p53 and c-Myc pathways
Tyrosine kinase inhibitors are a first-line therapy in patients with chronic myeloid leukaemia (CML), where they target the oncogenic
BCR-ABL
fusion gene. However, relapse inevitably occurs, probably driven by a drug-resistant population of leukaemic stem cells (LSCs). This study uncovers the concurrent involvement of p53 and Myc signalling networks in regulating LSCs. The authors demonstrate that genetic and/or pharmacological targeting of both the p53 and c-Myc pathways achieves more effective disease neutralization in mouse and human cell models of CML.
Journal Article
Comprehensive evidence implies a higher social cost of CO2
by
Anthoff, David
,
Errickson, Frank
,
Parthum, Bryan
in
704/106/694/2739
,
704/172/4081
,
704/844/2739
2022
The social cost of carbon dioxide (SC-CO
2
) measures the monetized value of the damages to society caused by an incremental metric tonne of CO
2
emissions and is a key metric informing climate policy. Used by governments and other decision-makers in benefit–cost analysis for over a decade, SC-CO
2
estimates draw on climate science, economics, demography and other disciplines. However, a 2017 report by the US National Academies of Sciences, Engineering, and Medicine
1
(NASEM) highlighted that current SC-CO
2
estimates no longer reflect the latest research. The report provided a series of recommendations for improving the scientific basis, transparency and uncertainty characterization of SC-CO
2
estimates. Here we show that improved probabilistic socioeconomic projections, climate models, damage functions, and discounting methods that collectively reflect theoretically consistent valuation of risk, substantially increase estimates of the SC-CO
2
. Our preferred mean SC-CO
2
estimate is $185 per tonne of CO
2
($44–$413 per tCO
2
: 5%–95% range, 2020 US dollars) at a near-term risk-free discount rate of 2%, a value 3.6 times higher than the US government’s current value of $51 per tCO
2
. Our estimates incorporate updated scientific understanding throughout all components of SC-CO
2
estimation in the new open-source Greenhouse Gas Impact Value Estimator (GIVE) model, in a manner fully responsive to the near-term NASEM recommendations. Our higher SC-CO
2
values, compared with estimates currently used in policy evaluation, substantially increase the estimated benefits of greenhouse gas mitigation and thereby increase the expected net benefits of more stringent climate policies.
Coupling advances in socioeconomic projections, climate models, damage functions and discounting methods yields an estimate of the social cost of carbon of US$185 per tonne of CO
2
—triple the widely used value published by the US government.
Journal Article
Growing single crystals of two-dimensional covalent organic frameworks enabled by intermediate tracing study
2022
Resolving single-crystal structures of two-dimensional covalent organic frameworks (2D COFs) is a great challenge, hindered in part by limited strategies for growing high-quality crystals. A better understanding of the growth mechanism facilitates development of methods to grow high-quality 2D COF single crystals. Here, we take a different perspective to explore the 2D COF growth process by tracing growth intermediates. We discover two different growth mechanisms, nucleation and self-healing, in which self-assembly and pre-arrangement of monomers and oligomers are important factors for obtaining highly crystalline 2D COFs. These findings enable us to grow micron-sized 2D single crystalline COF Py-1P. The crystal structure of Py-1P is successfully characterized by three-dimensional electron diffraction (3DED), which confirms that Py-1P does, in part, adopt the widely predicted AA stacking structure. In addition, we find the majority of Py-1P crystals (>90%) have a previously unknown structure, containing 6 stacking layers within one unit cell.
Resolving single-crystal structures of two-dimensional covalent organic frameworks (2D COFs) is a great challenge. Here, the authors identify two different growth mechanisms of COFs, enabling the growth and structure determination of micron-sized 2D single-crystalline COFs.
Journal Article