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115 result(s) for "Dempster, Tim"
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A fundamental model for oxygen consumption of Atlantic salmon
Predicting oxygen availability in Atlantic salmon farms is challenging, but digital simulations that couple bioenergetics and hydrodynamics show great promise. Robust simulations depend on reliable estimates of oxygen demand, yet previous empirical models offer limited accuracy. Here, we present a refined fundamental model for Atlantic salmon oxygen consumption rate (MO 2 ) as a function of three readily measurable parameters: body weight, water temperature, and relative swimming speed. Retaining the established framework of Grøttum and Sigholt (1998), we refined the model through an improved coefficient estimation approach and a methodologically rigorous dataset derived from group swim tunnel respirometry measurements on 718 fish across seven experiments. Model coefficients were re-estimated using log-linear regression fitted via nonlinear mixed-effects, substantially improving parameterisation and yielding a model that explains 80% of the observed variation in MO 2 : , where MO 2 is oxygen consumption rate (mg O 2 kg − 1 h − 1 ), W is body weight (kg), T is water temperature (°C), and U is relative swimming speed (body lengths s − 1 ). Our model delivers reliable estimates of Atlantic salmon oxygen demand across relevant farming conditions (0.2–3.4 kg, 3–18 °C, 0.3–2.8 body lengths s − 1 ). With broad utility in both research and industry, our model supports the development of more precise, data-driven strategies for modern salmon aquaculture.
Network analysis reveals strong seasonality in the dispersal of a marine parasite and identifies areas for coordinated management
Context Sea lice are the most significant parasitic problem affecting wild and farmed salmon. Larval lice released from infected fish in salmon farms and their transport by water masses results in inter-farm networks of lice dispersal. Understanding this parasite connectivity is key to its control and effective management. Objectives Quantify the spatial and seasonal patterns in sea lice ( Lepeophtheirus salmonis ) dispersal in an area with intensive salmon farming. Identify emergent clusters in the network, where associated salmon farms could be used for coordinated management and spatial planning of the industry. Methods We used a biophysical model to simulate lice dispersal from 537 salmon farms along the Norwegian coastline for two seasons (spring and winter) from 2009 to 2014. We used network analysis to characterize dispersal pathways and quantify the spatial and temporal patterns in connectivity. Results Lice dispersal patterns and network metrics varied greatly between seasons, but differences were consistent amongst years. Winter networks presented more connections, and links were on average two times longer (average winter median = 36.5 ± 7.6 km, mean ± SE; average spring median = 17.8 ± 1.7 km). We identified 12 emergent farm clusters, which were similar across seasons and with the production areas for salmon aquaculture proposed by the Norwegian government. Conclusions Seasonal variations in lice development times, oceanographic processes and the topological arrangement of salmon farms affect lice dispersal patterns. We have identified a biologically meaningful and politically tractable alliance structure for sea lice management consisting of closely-associated clusters of farms.
Evidence for the Evolution of Resistance to Non‐Chemical Parasite Controls: Salmon Lice From Submerged Cages Produce Larvae That Swim Deeper
Salmon lice (Lepeophtheirus salmonis) pose a major challenge to the sustainability of salmon aquaculture due to their capacity to rapidly evolve resistance to parasite control methods. As the effectiveness of chemical treatments has declined, the industry has increasingly relied on preventive strategies to limit initial infections. One such approach is depth‐based farming, where fish are held deeper in the water column using submerged cages. These systems reduce exposure to lice, which typically concentrate near the surface. However, there is growing concern that such practices may inadvertently select for lice that are better adapted to deeper swimming, potentially enabling resistance to depth‐based interventions. In this study, we investigated whether vertical swimming behaviour in salmon lice larvae is influenced by the depth at which their parents were collected. We sampled 122 adult female lice carrying egg strings from commercial salmon farms using either standard cages (0–20 m) or submerged cages (20–40 m). The first‐generation larvae were reared under controlled conditions, and the vertical positioning of 11,291 copepodid larvae was tested in pressure columns simulating a depth of 10 m. Our results revealed a significant interaction between larval depth distribution and the cage type from which the parental lice were sourced (χ2 = 278.85, df = 1, p < 0.001). Larvae from standard cages showed a greater tendency to ascend (35% vs. 23%) and were less likely to sink (19% vs. 27%) compared to larvae from submerged cages. These findings suggest that vertical swimming behaviour may be heritable, with submerged cages potentially selecting for deeper‐dwelling lice over time. This study provides the first evidence that the depth preference of salmon lice larvae may be influenced by their parents' environment. Understanding this behavioural inheritance is crucial for evaluating the long‐term sustainability of submerged cage systems and for developing lice management strategies that anticipate evolutionary responses.
Domesticating the wild through escapees of two iconic mediterranean farmed fish species
Extractive fisheries and marine aquaculture share space and target species. Several regional-scale examples exist of escapees entering wild fisheries landings, yet no study has assessed the influence of aquaculture on landings at an ecosystem scale. We examined the effects of farmed fish escapes on fisheries using FAO data and published escape rates for Gilthead seabream (Sparus aurata) and European seabass (Dicentrarchus labrax). Seabream landings were significantly correlated with the estimated biomass of escaped seabream entering the wild. There was a similar pattern for seabass until 2005, but the overall relationship between landings and escapes was not significant due to the dramatic drop in catches in recent years. We argue that seabass escapees’ relatively high mortality, lower capturability, and minor ‘leaking’ from farms may obscure their influence on landings. Significant positive fisheries regime shifts were detected for both species, matching the onset of aquaculture in the Mediterranean and the period when escapees from aquaculture surpassed landings. Our results suggest that fish escapes of these two iconic species may mask wild stock overexploitation, confound stock assessments, alter genetic diversity, increase the risk of spreading pathogens and parasites, and compete with wild conspecifics while boosting fisheries landings.
Modelling the Effectiveness of Gene‐Edited Salmon at Sea Lice Control and the Use of Refugia to Mitigate Counter‐Adaptation
Advances in gene‐editing technologies offer opportunities to improve disease management in aquaculture. Gene‐editing applications for farmed Atlantic salmon (Salmo salar) include harnessing innate parasite resistance to protect against salmon lice (Lepeophtheirus salmonis). The potential for salmon lice to counter‐adapt to changes in the host should be considered. However, salmon farms are highly connected through louse transmission, and so it is important to gauge the impact of new technologies over large scales. Exploring the epidemiology and evolution of lice across a farm network is possible using metapopulation models. Here, we expand upon an eco‐evolutionary model to simulate the stocking of theoretical gene‐edited Atlantic salmon that rejected lice to a similar degree as the more resistant coho salmon (Oncorhynchus kisutch). Model outputs suggested that such louse resistance would be highly effective at controlling outbreaks and reducing the need for additional delousing treatments. Lice were controlled more efficiently when gene edits were prioritized at key farms in the louse dispersal network. In scenarios where gene edits selected for adaptive traits in the louse population, however, lice rapidly evolved counter‐resistance, leading to a significant reduction in treatment efficacy. When highly connected farms were left as refugia (not stocked with edited salmon), the rate of adaptation was slowed, thus extending the effectiveness of gene edits through time. The refuge effect was further enhanced if there were fitness trade‐offs to counter‐resistance in lice. We note that the long‐term benefits of the refugia approach—to individual farms and to the wider industry—must be balanced with the costs in the short term, especially for the refuge farms. Careful planning of how to distribute new technologies can maximize efficiency and help safeguard them against parasite evolution. Spatial eco‐evolutionary models are powerful tools for scenario testing that assist with decision making.
Metasomatism and the crystallization of zircon megacrysts in Archaean peridotites from the Lewisian complex, NW Scotland
Zircon megacrysts are locally abundant in 1–40 cm-thick orthopyroxenite veins within peridotite host rocks in the Archaean Lewisian gneiss complex from NW Scotland. The veins formed by metasomatic interaction between the ultramafic host and Si-rich melts are derived from partial melting of the adjacent granulite-facies orthogneisses. The interaction produced abundant orthopyroxene and, within the thicker veins, phlogopite, pargasite and feldspathic bearing assemblages. Two generations of zircon are present with up to 1 cm megacrystic zircon and a later smaller equant population located around the megacryst margins. Patterns of zoning, rare earth element abundance and oxygen isotopic compositions indicate that the megacrysts crystallized from crustal melts, whereas the equant zircon represents new neocryst growth and partial replacement of the megacryst zircon within the ultramafic host. Both zircon types have U–Pb ages of ca. 2464 Ma, broadly contemporaneous with granulite-facies events in the adjacent gneisses. Zircon megacrysts locally form > 10% of the assemblage and may be associated to zones of localized nucleation or physically concentrated during movement of the siliceous melts. Their unusual size is linked to the suppression of zircon nucleation and increased Zr solubility in the Si-undersaturated melts. The metasomatism between crustal melts and peridotite may represent an analog for processes in the mantle wedge above subducting slabs. As such, the crystallization of abundant zircon in ultramafic host rocks has implications for geochemistry of melts generated in the mantle and the widely reported depletion of high field strength elements in arc magmas.
The influence of microscale lithological layering and fluid availability on the metamorphic development of garnet and zircon: insights into dissolution–reprecipitation processes
The response of garnet and zircon to prograde amphibolite-facies metamorphism in late Proterozoic mica schists from the Scottish Highlands has been investigated. Spatial analysis of zircon populations using scanning electron microscopy was undertaken in Dalradian Schists that have undergone a sequence of prograde garnet growth and localised breakdown reactions involving coupled dissolution–reprecipitation. Fluid availability and matrix permeability strongly control this metamorphic response and different generations of garnet contain radically different populations of metamorphic micro-zircon and associated changes in the detrital zircon population. Micro-zircon abundance increases during garnet growth, whereas that of detrital zircon decreases. The mineralogy of the matrix influences zircon abundance in porphyroblast phases, where garnet overgrows a micaceous matrix zircon-rich garnet forms and where it overgrows a quartzofeldspathic matrix the result is zircon-poor garnet. Following garnet growth, micro-zircon abundance decreases at each stage of the prograde reaction history, with sillimanite-zone schists containing the lowest abundance, suggesting micro-zircons are texturally less stable at staurolite- and sillimanite-grade metamorphism. Micro-zircons are distributed evenly across host minerals in the matrix, with the exception of retrograde chlorite where micro-zircons are absent due to fluids removing Zr before new zircon can precipitate. There is an overall decrease in the mode of zircon at each stage of the reaction history, indicating that zircon is a highly reactive phase during amphibolite-facies metamorphism and is very sensitive to individual prograde and retrograde reactions.
Quantifying the potential impact of the cane toad (Rhinella marina) on biodiversity in Australia’s Pilbara region
If eradication has become infeasible, containment of an invasive species may be a practical alternative. Like all management actions, however, containment comes with costs, so it is important to quantify the potential benefits accruing from a proposed containment action. Here we examine the ongoing spread of the toxic, invasive cane toad ( Rhinella marina ) across northern Australia, and a proposal to contain their spread and prevent their arrival in Australia’s Pilbara bioregion (178,000 km 2 ), ca. 500 kms south of the toad’s 2024 invasion front. We then evaluate the likely biodiversity costs if toads spread to the Pilbara. Under a ‘do-nothing’ scenario, toads are predicted to arrive via natural dispersal in the Pilbara between 2035 and 2055. They are predicted to colonise almost the entirety of the Pilbara bioregion. We predict that 25 vertebrate taxa resident in the Pilbara are likely to show population declines driven by lethal poisoning. Of the 25 at-risk taxa, eight are endemic to the Pilbara. A further two taxa are not endemic to the region but toad colonisation of the Pilbara will result in > 90% of their range being occupied by toads. Hence, we predict that the spread of toads to the Pilbara will cause an additional five mammals and four reptile species to be added to the threatened species list, and cause another species to be upgraded in threat status. These likely losses will also have cultural impacts for the First Nations people of the Pilbara, and cause economic impacts for the Pilbara’s primary industry; mining. Overall, our results show that predicted losses of the no-action option are high, and likely justify an attempt to exclude toads through establishment of a containment zone.
Demographic and Phenotypic Effects of Human Mediated Trophic Subsidy on a Large Australian Lizard (Varanus varius): Meal Ticket or Last Supper?
Humans are increasingly subsidizing and altering natural food webs via changes to nutrient cycling and productivity. Where human trophic subsidies are concentrated and persistent within natural environments, their consumption could have complex consequences for wild animals through altering habitat preferences, phenotypes and fitness attributes that influence population dynamics. Human trophic subsidies conceptually create both costs and benefits for animals that receive increased calorific and altered nutritional inputs. Here, we evaluated the effects of a common terrestrial human trophic subsidies, human food refuse, on population and phenotypic (comprising morphological and physiological health indices) parameters of a large predatory lizard (∼2 m length), the lace monitor (Varanus varius), in southern Australia by comparison with individuals not receiving human trophic subsidies. At human trophic subsidies sites, lizards were significantly more abundant and their sex ratio highly male biased compared to control sites in natural forest. Human trophic subsidies recipient lizards were significantly longer, heavier and in much greater body condition. Blood parasites were significantly lower in human trophic subsidies lizards. Collectively, our results imply that human trophic subsidized sites were especially attractive to adult male lace monitors and had large phenotypic effects. However, we cannot rule out that the male-biased aggregations of large monitors at human trophic subsidized sites could lead to reductions in reproductive fitness, through mate competition and offspring survival, and through greater exposure of eggs and juveniles to predation. These possibilities could have negative population consequences. Aggregations of these large predators may also have flow on effects to surrounding food web dynamics through elevated predation levels. Given that flux of energy and nutrients into food webs is central to the regulation of populations and their communities, we advocate further studies of human trophic subsidies be undertaken to evaluate the potentially large ecological implications of this significant human environmental alteration.
Evolutionary predictions for a parasite metapopulation: Modelling salmon louse resistance to pest controls in aquaculture
Pests often evolve resistance to pest controls used in agriculture and aquaculture. The rate of pest adaptation is influenced by the type of control, the selective pressure it imposes, and the gene flow between farms. By understanding how these factors influence evolution at the metapopulation level, pest management strategies that prevent resistance from evolving can be developed. We developed a model for the metapopulation and evolutionary dynamics of the salmon louse (Lepeophtheirus salmonis), which is a major parasite affecting salmon aquaculture. Different management scenarios were simulated across a network of salmon farms covering half of Norway, and their effects on louse epidemiology and evolution were investigated. We compared louse controls that differed in how they were deployed through time (discrete vs. continuous), how they impacted the louse life cycle, and in their overall efficacy. We adjusted the strength of selection imposed by treatments, the dominance effect of the resistant allele, and the geographic location at which resistance originated. Continuously acting strategies (e.g., louse-resistant salmon) were generally more effective than discrete strategies at controlling lice, especially when they increased louse mortality during early developmental stages. However, effective strategies also risked imposing frequent and/or strong selection on lice, thus driving rapid adaptation. Resistant alleles were more likely to be lost through genetic drift when they were recessive, had a low-fitness advantage, or originated in low-farm-density areas. The north-flowing current along the Norwegian coastline dispersed resistant genes from south to north, and limited gene flow in the opposite direction. We demonstrate how evolutionary models can produce quantitative predictions over large spatial and temporal scales and for a range of pest control scenarios. Quantitative outputs can be translated into practical management decisions applied at a regional level to minimise the risk of resistance developing.