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14 result(s) for "Dey, Joyoni"
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Theoretical and experimental analysis of the modulated phase grating X-ray interferometer
X-ray grating interferometry allows for the simultaneous acquisition of attenuation, differential-phase contrast, and dark-field images, resulting from X-ray attenuation, refraction, and small-angle scattering, respectively. The modulated phase grating (MPG) interferometer is a recently developed grating interferometry system capable of generating a directly resolvable interference pattern using a relatively large period grating envelope function that is sampled at a pitch that is small enough that X-ray spatial coherence can be achieved by using a microfocus X-ray source or G0 grating. We present the theory of the MPG interferometry system for a 2-dimensional staggered grating, derived using Fourier optics, and we compare the theoretical predictions with experiments we have performed with a microfocus X-ray system at Pennington Biomedical Research Center, LSU. The theoretical and experimental fringe visibility is evaluated as a function of grating-to-detector distance. Additionally, quantitative experiments are performed with porous carbon and alumina compounds, and the mean normalized dark-field signal is compared with independent porosimetry measurements. Qualitative analysis of attenuation and dark-field images of a dried anchovy are shown.
A 3D Superposition Approximation for Gamma Knife Dose Calculation
Effective dose calculation is essential for optimizing Gamma Knife (GK) stereotactic radiosurgery (SRS) treatment plans. Modern GK systems allow independent sector activation, enabling complex dose distributions per shot. This study presents a dose approximation method designed to account for shot flexibility and generate 3D doses external to GammaPlan. A treatment plan was created with the TMR10 calculation for individual sector activations using a Radiosurgery Head Phantom. The resulting dose arrays established a basis set of sector-specific distributions, which were then referenced by shot parameters from the plan, allowing dose accumulation through superposition. This superposition approximation (SA) was compared to the original TMR10 using the Dice Similarity Coefficient (DSC), 95% Hausdorff Distance (HD95), and GK deliverability metrics: coverage, selectivity, and gradient index, across an isodose normalization range from 10% to 90%. In a cohort of 30 patients with 71 targets, strong agreement was observed between TMR10 and SA in the clinically used 50–60% isodose range, with DSC above 85% and HD95 under 2.18 mm. The average differences for the coverage, selectivity, and gradient index were 0.014, 0.008, and 0.118, respectively. This method accurately approximates TMR10 calculations within clinically relevant ranges, offering an external tool to assess 3D dose distributions for GK treatment plans.
New compartment model analysis of lean-mass and fat-mass growth with overfeeding
Mathematical models of lean- and fat-mass growth with diet are useful to help describe and potentially predict the fat- and lean-mass change with different diets as a function of consumed protein and fat calories. Most of the existing models do not explicitly account for interdependence of fat-mass on the lean-mass and vice versa. The aim of this study was to develop a new compartmental model to describe the growth of lean and fat mass depending on the input of dietary protein and fat, and accounting for the interdependence of adipose tissue and muscle growth. The model was fitted to existing clinical data of an overfeeding trial for 23 participants (with a high-protein diet, a normal-protein diet, and a low-protein diet) and compared with the existing Forbes model. Qualitatively and quantitatively, the compartment model data fit was smoother with less overall error than the Forbes model. The root means square error were 0.39, 0.93 and 0.72 kg for the new model, the Forbes model, and the modified Forbes model, respectively. Additionally, for the present model, the differences between some of the coefficients (on the cross dependence of fat and lean mass as well as on the intake diet dependence) across different diets were statistically significant (P < 0.05). Our new Dey-model showed excellent fit to overfeeding data for 23 normal participants with some significant differences of model coefficients across diets, enabling further studies of the model coefficients for larger groups of participants with obesity or other diseases.
Maximum-likelihood estimation of glandular fraction for mammography and its effect on microcalcification detection
Breast tissue is mainly a mixture of adipose and fibro-glandular tissue. Cancer risk and risk of undetected breast cancer increases with the amount of glandular tissue in the breast. Therefore, radiologists must report the total volume glandular fraction or a BI-RADS classification in screening and diagnostic mammography. In this work, a Maximum Likelihood algorithm accounting for count statistics and scatter is shown to estimate the pixel-wise glandular fraction from mammographic images. The pixel-wise glandular fraction provides information that helps localize dense tissue. The total volume glandular fraction can be calculated from pixel-wise glandular fraction. The algorithm was implemented for images acquired with an anti-scatter grid, and those without using the anti-scatter grid but followed by software scatter removal. The work also studied if presenting the pixel-wise glandular fraction image alongside the usual mammographic image has the potential to improve the contrast-to-noise ratio on micro-calcifications in the breast. The algorithms are implemented and evaluated with TOPAS Geant4 generated images with known glandular fractions. These images are also taken with and without microcalcifications present to study the effects of glandular fraction estimation on microcalcification detection. The algorithm was then applied to clinical images with and without microcalcifications. For the TOPAS simulated images, the glandular fraction was estimated with a root mean squared error of 6.6% for the with anti-scatter-grid cases and 7.6% for the software scatter removal (no anti-scatter grid) cases for a range of 2–9 cm compressed breast thickness. Average absolute errors were 4.5% and 4.7% for a range of 2–9 cm compressed breast thickness respectively for the anti-scatter grid and software scatter-removal methods. For higher thickness and glandular fraction, the errors were higher. For the extreme case of 9 cm thickness, the glandular fraction estimation yielded 5%, 13% and 16% mean absolute errors for 20%, 30% and 50% glandular fraction. These errors lowered to 1.5%, 9% and 13.2% for a narrower spectrum for the 9 cm. Results from clinical images (where the true glandular fraction is unknown) show that the algorithm gives a glandular fraction within the average range expected from the literature. For microcalcification detection, the contrast-to-noise ratio improved by 17.5–548% in clinical images and 5.1–88% in TOPAS images. A method for accurately estimating the pixel-wise glandular fraction in images, which provides localization information about breast density, was demonstrated. The glandular fraction images also showed an improvement in contrast to noise ratio for detecting microcalcifications, a risk factor in breast cancer.
Moiré artifact reduction in grating interferometry using multiple harmonics and total variation regularization
X-ray interferometry is an emerging imaging modality with a wide variety of potential clinical applications, including lung imaging. A grating interferometer uses a diffraction grating to produce a periodic interference pattern and measures how a patient or sample perturbs the pattern, producing three unique images that highlight X-ray absorption, refraction, and small angle scattering, known as the attenuation, differential-phase, and dark-field images, respectively. Inaccuracies in grating position and multi-harmonic fringes produce Moiré artifacts when assuming the fringe pattern is perfectly sinusoidal and the phase steps are evenly spaced. We have developed an image recovery algorithm that estimates the true phase stepping positions using multiple harmonics and total variation regularization, removing the Moiré artifacts present in the attenuation, differential-phase, and dark-field images. We demonstrate the algorithm’s utility for the Talbot-Lau and Modulated Phase Grating Interferometers by imaging multiple samples, including PMMA microspheres and a euthanized mouse.
Analyzer-less X-ray Interferometry with Super-Resolution Methods
X-ray interferometry provides valuable information in terms of attenuation, small-angle scatter, and differential phase contrast. This multi-modal contrast can aid in many clinical applications, such as lung diseases and breast cancer. However, standard interferometry has an analyzer grating that can increase the dose requirement to maintain the same image quality as a standard X-ray. We propose the use of super-resolution methods for X-ray grating interferometry without an analyzer, with detectors that fail to meet the Nyquist sampling rate needed for traditional image recovery algorithms. We use the phase-steps judiciously to nominally recover the sampling and iteratively recover the visibility and the object parameters. This method enables Talbot-Lau interferometry without the X-ray absorbing analyzer. It also allows for smaller fringe periods (Pd) or higher autocorrelation lengths for the analyzer-less Modulated Phase Grating Interferometer. This will allow for reduced X-ray dose and higher autocorrelation lengths than previously accessible. We demonstrate the use of super-resolution methods to iteratively reconstruct attenuation, differential-phase, and dark-field images using simulations of two-dimensional lung phantoms with lesions. We tested a direct detector with 75 micron and 30 micron pixel size, modeled using a box-binning. We also tested scintillator-based detectors with 50 micron and 75 micron pixel sizes, modeled using Gaussian PSFs. We show that our super-resolution iterative reconstruction methods are robust to noise and can be used to improve grating interferometry for cases where traditional algorithms cannot be used.
Dark-Field X-Ray Imaging Significantly Improves Deep-Learning based Detection of Synthetic Early-Stage Lung Tumors in Preclinical Models
Low-dose computed tomography (LDCT) is the current standard for lung cancer screening, yet its adoption and accessibility remain limited. Many regions lack LDCT infrastructure, and even among those screened, early-stage cancer detection often yield false positives, as shown in the National Lung Screening Trial (NLST) with a sensitivity of 93.8 percent and a false-positive rate of 26.6 percent. We aim to investigate whether X-ray dark-field imaging (DFI) radiograph, a technique sensitive to small-angle scatter from alveolar microstructure and less susceptible to organ shadowing, can significantly improve early-stage lung tumor detection when coupled with deep-learning segmentation. Using paired attenuation (ATTN) and DFI radiograph images of euthanized mouse lungs, we generated realistic synthetic tumors with irregular boundaries and intensity profiles consistent with physical lung contrast. A U-Net segmentation network was trained on small patches using either ATTN, DFI, or a combination of ATTN and DFI channels. Results show that the DFI-only model achieved a true-positive detection rate of 83.7 percent, compared with 51 percent for ATTN-only, while maintaining comparable specificity (90.5 versus 92.9 percent). The combined ATTN and DFI input achieved 79.6 percent sensitivity and 97.6 percent specificity. In conclusion, DFI substantially improves early-tumor detectability in comparison to standard attenuation radiography and shows potential as an accessible, low-cost, low-dose alternative for pre-clinical or limited-resource screening where LDCT is unavailable.
Analyzer-less X-ray Interferometry with Super-Resolution Methods
We propose the use of super-resolution methods for X-ray grating interferometry without an analyzer with detectors that fail to meet the Nyquist sampling rate needed for traditional image recovery algorithms. This method enables Talbot-Lau interferometry without the X-ray absorbing analyzer and allows for higher autocorrelation lengths for the analyzer-less Modulated Phase Grating Interferometer. This will allow for reduced X-ray dose and higher autocorrelation lengths than previously accessible. We demonstrate the use of super-resolution methods to iteratively reconstruct attenuation, differential-phase, and dark-field images using simulations of a one-dimensional lung phantom with tumors. For a fringe period of pD = 22 m, we compare the simulated imaging performance of interferometers with a 30 m and 50 m detector for various signal-to-noise ratios. We show that our super-resolution iterative reconstruction methods are highly robust and can be used to improve grating interferometry for cases where traditional algorithms cannot be used.
X-ray Interferometry Using a Modulated Phase Grating: Theory and Experiments
X-ray grating interferometry allows for the simultaneous acquisition of attenuation, differential-phase contrast, and dark-field images, resulting from X-ray attenuation, refraction, and small-angle scattering, respectively. The modulated phase grating (MPG) interferometer is a recently developed grating interferometry system capable of generating a directly resolvable interference pattern using a relatively large period grating envelope function that is sampled at a pitch that allows for X-ray spatial coherence using a microfocus X-ray source or by use of a source G0 grating that follows the Lau condition. We present the theory of the MPG interferometry system for a 2-dimensional staggered grating, derived using Fourier optics, and we compare the theoretical predictions with experiments we have performed with a microfocus X-ray system at Pennington Biomedical Research Center, LSU. The theoretical and experimental fringe visibility is evaluated as a function of grating-to-detector distance. Quantitative experiments are performed with porous carbon and alumina samples, and qualitative analysis of attenuation and dark-field images of a dried anchovy are shown.
Moiré Artifact Reduction in Grating Interferometry Using Multiple Harmonics and Total Variation Regularization
X-ray interferometry is an emerging imaging modality with a wide variety of potential clinical applications, including lung imaging. A grating interferometer uses a diffraction grating to produce a periodic interference pattern and measures how a patient or sample perturbs the pattern, producing three unique images that highlight X-ray absorption, refraction, and small angle scattering, known as the attenuation, differential-phase, and dark-field images, respectively. Inaccuracies in grating position and multi-harmonic fringes produce Moiré artifacts when assuming the fringe pattern is perfectly sinusoidal and the phase steps are evenly spaced. We have developed an image recovery algorithm that estimates the true phase stepping positions using multiple harmonics and total variation regularization, removing the Moiré artifacts present in the attenuation, differential-phase, and dark-field images. We demonstrate the algorithm's utility for the Talbot-Lau and Modulated Phase Grating Interferometers by imaging multiple samples, including PMMA microspheres and a euthanized mouse.