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Endophytic fungi have been studied in recent decades to understand how they interact with their hosts, the types of relationships they establish, and the potential effects of this interaction. Dark septate endophytes (DSE) are isolated from healthy plants and form melanised structures in the roots, including inter- and intracellular hyphae and microsclerotia, causing low host specificity and covering a wide geographic range. Many studies have revealed beneficial relationships between DSE and their hosts, such as enhanced plant growth, nutrient uptake, and resistance to biotic and abiotic stress. Furthermore, in recent decades, studies have revealed the ability of DSE to mitigate the negative effects of crop diseases, thereby highlighting DSE as potential biocontrol agents of plant diseases (BCAs). Given the importance of these fungi in nature, this article is a review of the role of DSE as BCAs. The findings of increasing numbers of studies on these fungi and their relationships with their plant hosts are also discussed to enable their use as a tool for the integrated management of crop diseases and pests.

Plant quality and survival prediction tools are useful when applied in the field in different agricultural sectors. The objectives of this study were to conduct a review and bibliometric analysis of the Dickson Quality Index (DQI) as a key plant quality indicator and with respect to its scientific applications. A third objective was to identify the main morphological and physiological parameters used in plant production research. The methodology and findings of 289 scientific articles were analysed based on the morphological, physiological, and mathematical parameters used as plant quality indicators in research on forest, medicinal, horticultural, aromatic, and ornamental species. During the last 10 years, the number of publications that have used the DQI as a plant quality parameter has increased by 150%, and Brazilian researchers stand out as the most frequent users. Forestry is the discipline where quality parameters and their biometric relationships are most often used to facilitate intensive plant production. Use of the DQI increases the certainty of prediction, selection, and productivity in the plant production chain. The DQI is a robust tool with scientific application and great potential for use in the preselection of plants with high quality standards among a wide range of plant species.

Incorporating beneficial microorganisms in crop production is the most promising strategy for maintaining agricultural productivity and reducing the use of inorganic fertilizers, herbicides, and pesticides. Numerous microorganisms have been described in the literature as biological control agents for pests and diseases, although some have not yet been commercialised due to their lack of viability or efficacy in different crops. Paecilomyces is a cosmopolitan fungus that is mainly known for its nematophagous capacity, but it has also been reported as an insect parasite and biological control agent of several fungi and phytopathogenic bacteria through different mechanisms of action. In addition, species of this genus have recently been described as biostimulants of plant growth and crop yield. This review includes all the information on the genus Paecilomyces as a biological control agent for pests and diseases. Its growth rate and high spore production rate in numerous substrates ensures the production of viable, affordable, and efficient commercial formulations for agricultural use.

This present study evaluates three isolates of Trichoderma as plant growth promoting or biological control agents: Trichoderma aggressivum f. sp. europaeum, Trichoderma saturnisporum, and the marine isolate obtained from Posidonia oceanica, Trichoderma longibrachiatum. The purpose is to contribute to an overall reduction in pesticide residues in the fruit and the environment and to a decrease in chemical fertilizers, the excess of which aggravates one of the most serious abiotic stresses, salinity. The tolerance of the different isolates to increasing concentrations of sodium chloride was evaluated in vitro, as well as their antagonistic capacity against Pythium ultimum. The plant growth promoting capacity and effects of Trichoderma strains on the severity of P. ultimum on melon seedlings under saline conditions were also analysed. The results reveal that the three isolates of Trichoderma, regardless of their origin, alleviate the stress produced by salinity, resulting in larger plants with an air-dry weight percentage above 80% in saline stress conditions for T. longibrachiatum, or an increase in root-dry weight close to 50% when T. aggressivum f. sp. europaeum was applied. Likewise, the three isolates showed antagonistic activity against P. ultimum, reducing the incidence of the disease, with the highest response found for T. longibrachiatum. Biological control of P. ultimum by T. aggressivum f. sp. europaeum and T. saturnisporum is reported for the first time, reducing disease severity by 62.96% and 51.85%, respectively. This is the first description of T. aggressivum f. sp. europaeum as a biological control agent and growth promoter. The application of these isolates can be of enormous benefit to horticultural crops, in both seedbeds and greenhouses.

Almería, a province of Spain, is the leader in horticultural production on a Spanish and European scale. The specific conditions of greenhouse cultivation favor plant development, but also the proliferation of pests. This high incidence of pests was controlled in the past mainly by means of chemical phytosanitary treatments. The aim of the present work has been to analyze the tools facilitated by the Andalusian Government (Junta de Andalucía) to replace the usual pest management process, taking advantage of the context of the food safety alert arising from the detection of isophenphos-methyl in peppers from the province of Almeria in December 2007. The results illustrate that, unlike many programs of public subsidies which involve long-term expenditure, the aid in question took advantage of the socioeconomic situation following the food safety alert. The program led to substantial economic savings and met its objectives swiftly, achieving excellent results in terms of removing most of the pesticides used in the “conventional production system”. In the 2006–2007 season, only 515 hectares in Almería used biological control organisms, four years later, it reached 20,081 hectares, and the average area during the last ten years was 24,953 hectares. This shows that Almeria’s green pest management revolution had been consolidated.

In the present study, P. variotii, an endophytic fungus isolated from plant roots from the Cabo de Gata Natural Park (Parque Nacional Cabo de Gata—Spain), was tested to determine the effect on the growth promotion of tomato and pepper seeds and seedlings. For these purposes, germination trials in a laboratory and two experiments in a commercial nursery and greenhouse conditions were performed. The P. variotii isolate has shown a high ability to produce siderophores and IAA, but low ability to solubilize P. High values for germination percentage, seedling vigor, root and shoot length were obtained by P. variotii on tomato and pepper against control. P. variotii applications resulted in improved most of the growth parameters evaluated, for both horticultural crops, with the best results in the development of pepper seedlings. The application of a higher dose of P. variotii improved most of the morphological parameters and the Dickson quality index (DQI) value in tomato in seedlings and plants. The establishment of the endophytic fungus at the root enabled its biostimulant effects to persist after transplantation without any additional application. Few studies have analyzed this species as a biostimulant. The positive results from the tests showed its high potential. The application of this isolate can be of enormous benefit to horticultural crops for its high reproductive and establishment capacity.

first_pagesettingsOrder Article Reprints Open AccessArticle Biocontrol of Diseases Caused by Phytophthora capsici and P. parasitica in Pepper Plants by Mila Santos 1,*ORCID,Fernando Diánez 1ORCID,Brenda Sánchez-Montesinos 2,Victoria Huertas 1,Alejandro Moreno-Gavira 1,Belén Esteban García 3,José A. Garrido-Cárdenas 3ORCID andFrancisco J. Gea 4ORCID 1 Departamento de Agronomía, Escuela Superior de Ingeniería, Universidad de Almería, 04120 Almería, Spain 2 Departamento de Agronomía, División Ciencias de la Vida, Campus Irapuato-Salamanca, Universidad de Guanajuato, Irapuato 36500, Guanajuato, Mexico 3 Departamento de Biología y Geología, Edificio CITE IIB, Universidad de Almería, 04120 Almería, Spain 4 Centro de Investigación, Experimentación y Servicios del Champiñón (CIES), Quintanar del Rey, 16220 Cuenca, Spain * Author to whom correspondence should be addressed. J. Fungi 2023, 9(3), 360; https://doi.org/10.3390/jof9030360 Received: 6 February 2023 / Revised: 10 March 2023 / Accepted: 11 March 2023 / Published: 15 March 2023 (This article belongs to the Special Issue Isolation and Control of Fruit and Vegetable Rot Fungi) Download Browse Figures Versions Notes Abstract The main objective of this study was to evaluate the ability of Trichoderma aggressivum f. europaeum, T. longibrachiatum, Paecilomyces variotii, and T. saturnisporum as biological control agents (BCAs) against diseases caused by P. capsici and P. parasitica in pepper. For this purpose, their antagonistic activities were evaluated both in vitro and in vivo. We analysed the expression patterns of five defence related genes, CaBGLU, CaRGA1, CaBPR1, CaPTI1, and CaSAR8.2, in leaves. All BCAs showed a high in vitro antagonistic activity, significantly reducing the mycelial growth of P. capsici and P. parasitica. The treatments with T. aggressivum f. europaeum, T. longibrachiatum, and P. variotii substantially reduced the severity of the disease caused by P. capsici by 54, 76, and 70%, respectively, and of the disease caused by P. parasitica by 66, 55, and 64%, respectively. T. saturnisporum had the lowest values of disease reduction. Reinoculation with the four BCAs increased the control of both plant pathogens. Markedly different expression patterns were observed in the genes CaBGLU, CaRGA1, and CaSAR8.2. Based on the results, all four BCAs under study could be used as a biological alternative to chemicals for the control of P. capsici and P. parasitica in pepper with a high success rate.

The main aim of this study was to evaluate the use of essential oils (EOs) as an alternative to synthetic fungicides used in the control of cobweb disease of button mushroom (Agaricus bisporus) caused by Cladobotryum mycophilum. The EOs used were obtained by hydrodistillation from five Mediterranean aromatic species (Lavandula × intermedia, Salvia lavandulifolia, Satureja montana, Thymus mastichina, and Thymus vulgaris), analyzed by gas chromatography, and tested in vitro for their antifungal activity against C. mycophilum. In vitro bioassays showed that the EOs obtained from T. vulgaris and S. montana (ED50 = 35.5 and 42.8 mg L−1, respectively) were the most effective EOs for inhibiting the mycelial growth of C. mycophilum, and were also the most selective EOs between C. mycophilum and A. bisporus. The in vivo efficacy of T. vulgaris and S. montana EOs at two different concentrations (0.5 and 1%) were evaluated in two mushroom growing trials with C. mycophilum inoculation. The treatments involving T. vulgaris and S. montana EOs at the higher dose (1% concentration) were as effective as fungicide treatment. The effect of these EOs on mushroom productivity was tested in a mushroom cropping trial without inoculation. They had a strong fungitoxic effect at the first flush. However, a compensatory effect was observed by the end of the crop cycle and no differences were observed in biological efficiency between treatments. The main compounds found were carvacrol and p-cymene for S. montana, and p-cymene and thymol for T. vulgaris. These results suggest that T. vulgaris and S. montana EOs may be useful products to manage cobweb disease if used as part of an integrated pest management (IPM) program.

The genus Paecilomyces is known for its potential application in the control of pests and diseases; however, its use in agriculture is limited to few species. Research interest in new formulations based on microorganisms for the control of pathogens is growing exponentially; therefore, it is necessary to study new isolates, which may help control diseases effectively, and to examine their compatibility with established agricultural control methods. We analysed in vitro and in vivo the antagonistic capacity of Paecilomyces variotii against seven phytopathogens with a high incidence in different crops, and we examined its compatibility with 24 commercial fungicides. P. variotii was applied in the following pathosystems: B. cinereal—melon, Sclerotinia sclerotiorum—pepper, R. solani—tomato, F. solani—zucchini, P. aphanidermatum—melon, M. melonis—melon, and P. xanthii—zucchini. The results showed strong control effects on M. melonis and P. xanthii, reducing the disease severity index by 78% and 76%, respectively. The reduction in disease severity in the other pathosystems ranged from 29% to 44%. However, application of metabolites alone did not cause any significant effect on mycelial growth of phytopathogens, apart from F. solani, in which up to 12% inhibition was observed in vitro when the extract was applied at a concentration of 15% in the medium. P. variotii was compatible with most of the tested fungicides, and of the 24 fungicides tested at the maximum authorised dose, 6 acted as fungicides, 4 as fungistatics, and the remaining showed inhibition rates ranging from 18.2% to 95.8%. These results indicate that P. variotii is a potential biological control agent to be used against several aerial and soil diseases, thus it should be integrated into modern pest management strategies.

A study was conducted to explore the efficacy of potential biocontrol agent Cladobotryum mycophilum against different phytopathogenic fungi. The growth rates of 24 isolates of C. mycophilum were determined, and their antagonistic activity was analysed in vitro and in vivo against Botrytis cinerea, Fusarium oxysporum f. sp. radicis-lycopersici, Fusarium oxysporum f.sp. cucumerinum, Fusarium solani, Phytophthora parasitica, Phytophthora capsici, Pythium aphanidermatum and Mycosphaerella melonis. Most isolates grow rapidly, reaching the opposite end of the Petri dish within 72–96 h. Under dual-culture assays, C. mycophilum showed antagonistic activity in vitro against all phytopathogenic fungi tested, with mycelial growth inhibition ranging from 30 to 90% against all the different phytopathogens tested. Similarly, of all the selected isolates, CL60A, CL17A and CL18A significantly (p < 0.05) reduced the disease incidence and severity in the plant assays compared to the controls for the different pathosystems studied. Based on these results, we conclude that C. mycophilum can be considered as a potential biological control agent in agriculture. This is the first study of Cladobotryum mycophilum as a biological control agent for different diseases caused by highly relevant phytopathogens in horticulture