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"Diaz, Maria"
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Phylomitogenomics bolsters the high-level classification of Demospongiae (phylum Porifera)
Class Demospongiae is the largest in the phylum Porifera (Sponges) and encompasses nearly 8,000 accepted species in three subclasses: Keratosa, Verongimorpha, and Heteroscleromorpha. Subclass Heteroscleromorpha contains ∼90% of demosponge species and is subdivided into 17 orders. The higher level classification of demosponges underwent major revision as the result of nearly three decades of molecular studies. However, because most of the previous molecular work only utilized partial data from a small number of nuclear and mitochondrial (mt) genes, this classification scheme needs to be tested by larger datasets. Here we compiled a mt dataset for 136 demosponge species—including 64 complete or nearly complete and six partial mt-genome sequences determined or assembled for this study—and used it to test phylogenetic relationships among Demospongiae in general and Heteroscleromorpha in particular. We also investigated the phylogenetic position of Myceliospongia araneosa , a highly unusual demosponge without spicules and spongin fibers, currently classified as Demospongiae incertae sedis , for which molecular data were not available. Our results support the previously inferred sister-group relationship between Heteroscleromorpha and Keratosa + Verongimorpha and suggest five main clades within Heteroscleromorpha: Clade C0 composed of order Haplosclerida; Clade C1 composed of Scopalinida, Sphaerocladina, and Spongillida; Clade C2 composed of Axinellida, Biemnida, Bubarida; Clade C3 composed of Tetractinellida; and Clade C4 composed of Agelasida, Clionaida, Desmacellida, Merliida, Suberitida, Poecilosclerida, Polymastiida, and Tethyida. The inferred relationships among these clades were (C0(C1(C2(C3+C4))). Analysis of molecular data from M. araneosa placed it in the C3 clade as a sister taxon to the highly skeletonized tetractinellids Microscleroderma sp. and Leiodermatium sp. Molecular clock analysis dated divergences among the major clades in Heteroscleromorpha from the Cambrian to the Early Silurian, the origins of most heteroscleromorph orders in the middle Paleozoic, and the most basal splits within these orders around the Paleozoic to Mesozoic transition. Overall, the results of this study are mostly congruent with the accepted classification of Heteroscleromorpha, but add temporal perspective and new resolution to phylogenetic relationships within this subclass.
Journal Article
The YAP/TAZ Signaling Pathway in the Tumor Microenvironment and Carcinogenesis: Current Knowledge and Therapeutic Promises
The yes-associated protein (YAP) and the transcriptional coactivator with PDZ-binding motif (TAZ) are transcriptional coactivators, members of the Hippo signaling pathway, which play a critical role in cell growth regulation, embryonic development, regeneration, proliferation, and cancer origin and progression. The mechanism involves the nuclear binding of the un-phosphorylated YAP/TAZ complex to release the transcriptional enhanced associate domain (TEAD) from its repressors. The active ternary complex is responsible for the aforementioned biological effects. Overexpression of YAP/TAZ has been reported in cancer stem cells and tumor resistance. The resistance involves chemotherapy, targeted therapy, and immunotherapy. This review provides an overview of YAP/TAZ pathways’ role in carcinogenesis and tumor microenvironment. Potential therapeutic alternatives are also discussed.
Journal Article
Can overcompensation increase crop production?
The two most pressing challenges to agriculture worldwide are feeding a rapidly growing human population and developing more sustainable agricultural practices that do not threaten human and ecosystem health. We address these challenges through research in plant-herbivore interactions, specifically overcompensatory responses in potato to herbivore damage. While herbivory is usually detrimental to most crops, some potato cultivars can overcompensate and increase crop productivity up to two-fold in response to herbivore damage. However, biotic and abiotic factors are known to influence compensatory responses. Here we tested if compensatory plant responses to herbivory increase productivity of potatoes under field conditions along gradients of altitude and landscape simplification in 15 different farms. Our results suggest that compensatory plant responses could double the mean productivity of a potato farm in relation to the productivity of undamaged plants. The compensatory response is best predicted by pest pressure on a farm with potato plants having the maximum productivity when 10% of the tubers are damaged and decreasing in productivity as pest pressure increases. To a lesser extent an interaction between altitude and landscape simplification did affect the compensatory response, suggesting that abiotic factors play an important role in compensation. Our results suggest that overcompensation-based management practices could be used to maximize yields on working potato farms. Further research is required to determine action thresholds (i.e. the damage levels at which pest control needs to be enacted to maximize yields and minimize insecticide use) to develop more sustainable ways of increasing yields in the future.
Journal Article
Synthesis and Structure Determination of the Hierarchical Meso-Microporous Zeolite ITQ-43
The formation of mesopores in microporous zeolites is generally performed by postsynthesis acid, basic, and steam treatments. The hierarchical pore systems thus formed allow better adsorption, diffusion, and reactivity of these materials. By combining organic and inorganic structure-directing agents and high-throughput methodologies, we were able to synthesize a zeolite with a hierarchical system of micropores and mesopores, with channel openings delimited by 28 tetrahedral atoms. Its complex crystalline structure was solved with the use of automated diffraction tomography.
Journal Article
Voting to Ban Same-Sex Marriage: Interests, Values, and Communities
From 2000 through 2008, initiatives proposing to ban same-sex marriage were on the ballot in 28 states. Although same-sex marriage opponents scored lopsided victories in most cases, voting outcomes varied substantially at the county level. This article examines sources of that variation and argues that opposition to same-sex marriage should be strong in communities characterized by the predominance of traditional gender roles and family structure. Perhaps more interestingly, the analysis also shows that the effects of traditional family structure and gender roles are especially strong in counties characterized by weak community cohesion, as indicated by residential instability, low rates of home ownership, and high crime rates.
Journal Article
Thermal and Rheological Properties of Fischer–Tropsch Wax/High‐Flow LLDPE Blends
Waxes find use as processing aids in filled compounds and polyethylene‐based masterbatches. In such applications, the thermal and physical property changes they impart to the polymer matrix are important. Therefore, this study details results obtained for blends prepared by mixing a Fischer–Tropsch (F–T) wax with a high‐flow linear low‐density polyethylene (LLDPE). The melting and crystallization behavior are studied using hot‐stage polarized optical microscopy (POM) and differential scanning calorimetry (DSC). The calorimetry results are consistent with partial cocrystallization of the two components. The melting and crystallization exo‐ and endotherms for the wax‐ and LLDPE‐rich phases remained separate. However, they change in shape and shift toward higher‐ and lower temperature ranges, respectively. It is found that increasing the wax content delays the crystallization, decreases the overall crystallinity, and reduces the size of the crystallites of the polyethylene‐rich phase. Rotational viscosity is measured at 170 °C in the Newtonian shear‐rate range. The variation of the zero‐shear viscosity with blend composition is consistent with the assumption of a homogeneous melt in which the chains are in an entangled state. Therefore, it is concluded that the wax and LLDPE are, in effect, miscible in the melt and partially compatible in the solid state. Waxes find use as processing aids in filled compounds and polyethylene‐based masterbatches. This work provides more context concerning compatibility, between a Fischer–Tropsch wax and high‐flow linear low‐density polyethylene, and the rheological properties of these blends for the above‐mentioned application. This manuscript investigates the F‐T wax/LLDPE blends over the full range of compositions.
Journal Article
PTHrP intracrine actions divergently influence breast cancer growth through p27 and LIFR
The role of parathyroid hormone (PTH)-related protein (PTHrP) in breast cancer remains controversial, with reports of PTHrP inhibiting or promoting primary tumor growth in preclinical studies. Here, we provide insight into these conflicting findings by assessing the role of specific biological domains of PTHrP in tumor progression through stable expression of PTHrP (-36-139aa) or truncated forms with deletion of the nuclear localization sequence (NLS) alone or in combination with the C-terminus. Although the full-length PTHrP molecule (-36-139aa) did not alter tumorigenesis, PTHrP lacking the NLS alone accelerated primary tumor growth by downregulating p27, while PTHrP lacking the NLS and C-terminus repressed tumor growth through p27 induction driven by the tumor suppressor leukemia inhibitory factor receptor (LIFR). Induction of p27 by PTHrP lacking the NLS and C-terminus persisted in bone disseminated cells, but did not prevent metastatic outgrowth, in contrast to the primary tumor site. These data suggest that the PTHrP NLS functions as a tumor suppressor, while the PTHrP C-terminus may act as an oncogenic switch to promote tumor progression through differential regulation of p27 signaling.
Journal Article
Newly Identified Wild Rice Accessions Conferring High Salt Tolerance Might Use a Tissue Tolerance Mechanism in Leaf
Cultivated rice (
L.) is very sensitive to salt stress. So far a few rice landraces have been identified as a source of salt tolerance and utilized in rice improvement. These tolerant lines primarily use Na
exclusion mechanism in root which removes Na
from the xylem stream by membrane Na
and K
transporters, and resulted in low Na
accumulation in shoot. Identification of a new donor source conferring high salt tolerance is imperative. Wild relatives of rice having wide genetic diversity are regarded as a potential source for crop improvement. However, they have been less exploited against salt stress. Here, we simultaneously evaluated all 22 wild
species along with the cultivated tolerant lines including Pokkali, Nona Bokra, and FL478, and sensitive check varieties under high salinity (240 mM NaCl). Based on the visual salt injury score, three species (
.
.
, and
.
) and four species (
.
.
.
, and
.
) showed higher and similar level of tolerance compared to the tolerant checks, respectively. All three CCDD genome species exhibited salt tolerance, suggesting that the CCDD genome might possess the common genetic factors for salt tolerance. Physiological and biochemical experiments were conducted using the newly isolated tolerant species together with checks under 180 mM NaCl. Interestingly, all wild species showed high Na
concentration in shoot and low concentration in root unlike the tolerant checks. In addition, the wild-tolerant accessions showed a tendency of a high tissue tolerance in leaf, low malondialdehyde level in shoot, and high retention of chlorophyll in the young leaves. These results suggest that the wild species employ tissue tolerance mechanism to manage salt stress. Gene expression analyses of the key salt tolerance-related genes suggested that high Na
in leaf of wild species might be affected by
-mediated Na
exclusion in leaf and the following Na
sequestration in leaf might be occurring independent of tonoplast-localized OsNHX1. The newly isolated wild rice accessions will be valuable materials for both rice improvement to salinity stress and the study of salt tolerance mechanism in plants.
Journal Article
Technologies for the Preservation of Cultural Heritage—A Systematic Review of the Literature
This work establishes the technological elements that have enabled the preservation, promotion, and dissemination of tangible and intangible cultural heritage in the period from 2018 to 2022. For this, a Systematic Literature Review (SLR) was conducted in the scientific databases Scopus, Science Direct, IEEE and Web of Science, which facilitated the identification of 146 articles related to the topic. A quantitative and qualitative analysis of the journals, authors and topics was carried out, detailing the important variables required to establish the sought-out elements; for this purpose, the following were quantified in the papers: type, topic, categorization, country, and language; in the publications, the type of heritage chosen, the place of the heritage and the type of intervention were investigated. The number of publications reporting the use of some type of technology was also identified, finding that 70% of them show a technological approach to preserve cultural heritage, while 30% refer to other types of interventions. The technologies reported to be used the most are 3D digital technologies (44% of those showing technological applications), augmented reality or virtual reality, henceforth AR/VR (15%).
Journal Article