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276 result(s) for "Dimitrov, Dimitar"
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A glimpse on the pattern of rodent diversification: a phylogenetic approach
RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.
Fine-Scale Spatial Distribution of Indoor Radon and Identification of Potential Ingress Pathways
A new generation of compact radon detectors with high sensitivity and fine spatial resolution (1–2 cm scale) was used to investigate indoor radon distribution and identify potential entry pathways. Solid-state nuclear track detectors (Kodak-Pathe LR-115 type II, Dosirad, France), combined with activated carbon fabric (ACC-5092-10), enabled sensitive, spatially resolved radon measurements. Two case studies were conducted: Case 1 involves a room with elevated radon levels suspected to originate from the floor. Case 2 involves a house with persistently high indoor radon concentrations despite active basement ventilation. In the first case, radon emission from the floor was found to be highly inhomogeneous, with concentrations varying by more than a factor of four. In the second, unexpectedly high radon levels were detected at electrical switches and outlets on walls in the living space, suggesting radon transport through wall voids and entry via non-hermetic electrical fittings. These novel detectors facilitate fine-scale mapping of indoor radon concentrations, revealing ingress routes that were previously undetectable. Their use can significantly enhance radon diagnostics and support the development of more effective mitigation strategies.
Salivary Cortisone as a Potential Alternative to Cortisol in Periodontitis Severity Assessment
Salivary cortisol is widely used to investigate stress–periodontitis interactions, but its measurement is affected by methodological limitations. Cortisone, the predominant salivary glucocorticoid, may offer analytical advantages, yet its role in periodontitis remains unexplored. This study evaluated salivary cortisone in relation to periodontal disease severity and compared its performance with cortisol. Sixty-seven periodontitis patients were classified as Stage I/II (n = 32) or Stage III/IV (n = 35). A comprehensive periodontal examination was performed, including FMPS, FMBS, PPD, CAL, BoP, and the BL/Age ratio. Unstimulated morning saliva samples were analyzed for cortisone and cortisol using liquid chromatography–tandem mass spectrometry, and for IL-1β and IL-6 using ELISA. Both cortisone and cortisol levels were significantly higher in Stage III/IV periodontitis (p = 0.014). Cortisone correlated strongly with cortisol (ρ = 0.523, p < 0.001) and was positively associated with IL-6 (ρ = 0.322, p = 0.008) and multiple clinical indicators of periodontal disease severity. ROC analysis showed comparable discriminatory performance for cortisone and cortisol (AUC = 0.675), with cortisone demonstrating higher specificity (94%) for Stage III/IV periodontitis. Our findings suggest that salivary cortisone performs similarly to cortisol and warrants further investigation as an alternative salivary glucocorticoid marker in periodontal research.
Interrogating Genomic-Scale Data to Resolve Recalcitrant Nodes in the Spider Tree of Life
Genome-scale data sets are converging on robust, stable phylogenetic hypotheses for many lineages; however, some nodes have shown disagreement across classes of data. We use spiders (Araneae) as a system to identify the causes of incongruence in phylogenetic signal between three classes of data: exons (as in phylotranscriptomics), noncoding regions (included in ultraconserved elements [UCE] analyses), and a combination of both (as in UCE analyses). Gene orthologs, coded as amino acids and nucleotides (with and without third codon positions), were generated by querying published transcriptomes for UCEs, recovering 1,931 UCE loci (codingUCEs). We expected that congeners represented in the codingUCE and UCEs data would form clades in the presence of phylogenetic signal. Noncoding regions derived from UCE sequences were recovered to test the stability of relationships. Phylogenetic relationships resulting from all analyses were largely congruent. All nucleotide data sets from transcriptomes, UCEs, or a combination of both recovered similar topologies in contrast with results from transcriptomes analyzed as amino acids. Most relationships inferred from low-occupancy data sets, containing several hundreds of loci, were congruent across Araneae, as opposed to high occupancy data matrices with fewer loci, which showed more variation. Furthermore, we found that low-occupancy data sets analyzed as nucleotides (as is typical of UCE data sets) can result in more congruent relationships than high occupancy data sets analyzed as amino acids (as in phylotranscriptomics). Thus, omitting data, through amino acid translation or via retention of only high occupancy loci, may have a deleterious effect in phylogenetic reconstruction.
An updated floristic map of the world
Floristic regions reflect the geographic organization of floras and provide essential tools for biological studies. Previous global floristic regions are generally based on floristic endemism, lacking a phylogenetic consideration that captures floristic evolution. Moreover, the contribution of tectonic dynamics and historical and current climate to the division of floristic regions remains unknown. Here, by integrating global distributions and a phylogeny of 12,664 angiosperm genera, we update global floristic regions and explore their temporal changes. Eight floristic realms and 16 nested sub-realms are identified. The previously-defined Holarctic, Neotropical and Australian realms are recognized, but Paleotropical, Antarctic and Cape realms are not. Most realms have formed since Paleogene. Geographic isolation induced by plate tectonics dominates the formation of floristic realms, while current/historical climate has little contribution. Our study demonstrates the necessity of integrating distributions and phylogenies in regionalizing floristic realms and the interplay of macroevolutionary and paleogeographic processes in shaping regional floras.
Reply to: Reassessing data quality underlying the recently updated floristic map of the world
A Matters Arising article has raised concerns about the general distribution data used in our study, suggesting the use of non-native distribution records and incomplete sampling, and arguing that these issues may bias our findings. After a careful examination of our data and a re-analysis, we found that these issues and their effects on our results are not as serious as suggested in the Matters Arising. We further updated our databases based on the latest version of the POWO database and repeated the regionalization analyses.
Microhabitat change drives diversification in pholcid spiders
Background Microhabitat changes are thought to be among the main drivers of diversification. However, this conclusion is mostly based on studies on vertebrates. Here, we investigate the influence of microhabitat on diversification rates in pholcid spiders (Araneae, Pholcidae). Diversification analyses were conducted in the framework of the largest molecular phylogeny of pholcid spiders to date based on three nuclear and three mitochondrial loci from 600 species representing more than 85% of the currently described pholcid genera. Results Assessments of ancestral microhabitat revealed frequent evolutionary change. In particular, within the largest subfamily Pholcinae, numerous changes from near-ground habitats towards leaves and back were found. In general, taxa occupying leaves and large sheltered spaces had higher diversification rates than ground-dwelling taxa. Shifts in speciation rate were found in leaf- and space-dwelling taxa. Conclusions Our analyses result in one of the most comprehensive phylogenies available for a major spider family and provide a framework for any subsequent studies of pholcid spider biology. Diversification analyses strongly suggest that microhabitat is an important factor influencing diversification patterns in pholcid spiders.
Presynaptic morphology and vesicular composition determine vesicle dynamics in mouse central synapses
Transport of synaptic vesicles (SVs) in nerve terminals is thought to play essential roles in maintenance of neurotransmission. To identify factors modulating SV movements, we performed real-time imaging analysis of fluorescently labeled SVs in giant calyceal and conventional hippocampal terminals. Compared with small hippocampal terminals, SV movements in giant calyceal terminals were faster, longer and kinetically more heterogeneous. Morphological maturation of giant calyceal terminals was associated with an overall reduction in SV mobility and displacement heterogeneity. At the molecular level, SVs over-expressing vesicular glutamate transporter 1 (VGLUT1) showed higher mobility than VGLUT2-expressing SVs. Pharmacological disruption of the presynaptic microtubule network preferentially reduced long directional movements of SVs between release sites. Functionally, synaptic stimulation appeared to recruit SVs to active zones without significantly altering their mobility. Hence, the morphological features of nerve terminals and the molecular signature of vesicles are key elements determining vesicular dynamics and movements in central synapses. In the brains of mammals, communication between cells called neurons is vital for learning and memory. Pairs of neurons communicate at junctions called synapses. At a synapse, the first neuron releases chemical messengers into the gap between the cells, which then bind to and activate receptor proteins on the surface of the second neuron. The chemical messengers are released from bubble-like packages called synaptic vesicles that fuse with the first neuron’s membrane and empty their contents into the synapse. This same neuron then retrieves and reassembles the components of the vesicle, ready to be filled again with the chemical messengers. Neurons must continually retrieve and refill vesicles in order to continue transmitting information at synapses. But while the mechanisms of vesicle fusion and retrieval are well characterized, it remains unclear what triggers the movement and supply of vesicles inside synapses or how these processes are regulated. Deciphering these mechanisms will help us better understand how synapses work in healthy as well as diseased brains. Using high-resolution microscopy, Guillaud et al. have now studied the movements of fluorescently labeled vesicles inside mouse brain synapses grown in the laboratory. This revealed that synaptic vesicles move in much more varied and complex ways than previously thought. The movement of vesicles changed depending on the type and developmental stage of the synapses. It also depended on the identity of particular proteins within the membranes of the vesicles themselves. These proteins, known as transporters, enable vesicles to take up the chemical messengers. Vesicles with different transporters showed different patterns of movement. Disrupting components of the internal skeleton of the neuron – specifically protein filaments called microtubules – also disrupted vesicle movement. By contrast, changes in the activity level of the synapse had no such effect. The next step is to determine exactly how these factors regulate the movement of vesicles at synapses. Studies can then examine whether these processes are disrupted in neurological disorders, in which communication at synapses is often impaired.
Wronskians of Fourier and Laplace transforms
Associated with a given suitable function, or a measure, on R\\mathbb {R}, we introduce a correlation function so that the Wronskian of the Fourier transform of the function is the Fourier transform of the corresponding correlation function, and the same holds for the Laplace transform. We obtain two types of results. First, we show that Wronskians of the Fourier transform of a nonnegative function on R\\mathbb {R} are positive definite functions and that the Wronskians of the Laplace transform of a nonnegative function on R+\\mathbb {R}_+ are completely monotone functions. Then we establish necessary and sufficient conditions in order that a real entire function, defined as a Fourier transform of a positive kernel KK, belongs to the Laguerre–Pólya class, which answers an old question of Pólya. The characterization is given in terms of a density property of the correlation kernel related to KK, via classical results of Laguerre and Jensen and employing Wiener’s L1L^1 Tauberian theorem. As a consequence, we provide a necessary and sufficient condition for the Riemann hypothesis in terms of a density of the translations of the correlation function related to the Riemann ξ\\xi-function.
Global patterns of \Rhododendron\ diversity: The role of evolutionary time and diversification rates
Aim: Understanding the evolution of the latitudinal diversity gradient (i.e. increase in species diversity towards the tropics) is a prominent issue in ecology and biogeography. Disentangling the relative contributions of environment and evolutionary history in shaping this gradient remains a major challenge because their relative importance has been found to vary across regions and taxa. Here, using the global distributions and a molecular phylogeny of Rhododendron, one of the largest genera of flowering plants, we aim to compare the relative contributions of contemporary environment, evolutionary time and diversification rates in generating extant species diversity patterns. Location: Global. Time period: Undefined. Major taxa studied: Rhododendron. Methods: We compiled the global distributions of all Rhododendron species, and constructed a dated molecular phylogeny using nine chloroplast genes and seven nuclear regions. By integrating these two datasets, we estimated the temporal trends of Rhododendron diversification, and explored the global patterns of its species diversity, net diversification rates, and species ages. Next, we reconstructed the geographical ancestral area of the clade. Finally, we compared the relative contribution of contemporary environment, time-for-speciation, and diversification rates on the species diversity pattern of Rhododendron. Results: In contrast to the predictions of the time-for-speciation hypothesis, we found that although Rhododendron originated at a temperate latitude, its contemporary species diversity is highest in the tropics/subtropics, suggesting an into-the-tropics colonization for this genus. We found that the elevated diversification induced by heterogeneous environmental conditions in the tropics/subtropics shapes the global pattern of Rhododendron diversity. Main conclusions: Our findings support tropical and subtropical mountains as not only biodiversity and endemism hotspots, but also as cradles for the diversification of Rhododendron. Our study emphasizes the need of unifying ecological and evolutionary approaches in order to gain comprehensive understanding of the mechanisms underlying the global patterns of plant diversity.