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result(s) for
"Do, Cao Tri"
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Technical note: A fast and robust integrator of delay differential equations in DCM for electrophysiological data
by
Do, Cao-Tri
,
Schöbi, Dario
,
Tittgemeyer, Marc
in
Algorithms
,
Approximation
,
Brain - physiology
2021
Dynamic causal models (DCMs) of electrophysiological data allow, in principle, for inference on hidden, bulk synaptic function in neural circuits. The directed influences between the neuronal elements of modeled circuits are subject to delays due to the finite transmission speed of axonal connections. Ordinary differential equations are therefore not adequate to capture the ensuing circuit dynamics, and delay differential equations (DDEs) are required instead. Previous work has illustrated that the integration of DDEs in DCMs benefits from sophisticated integration schemes in order to ensure rigorous parameter estimation and correct model identification. However, integration schemes that have been proposed for DCMs either emphasize speed (at the possible expense of accuracy) or robustness (but with computational costs that are problematic in practice).
In this technical note, we propose an alternative integration scheme that overcomes these shortcomings and offers high computational efficiency while correctly preserving the nature of delayed effects. This integration scheme is available as open-source code in the Translational Algorithms for Psychiatry-Advancing Science (TAPAS) toolbox and can be easily integrated into existing software (SPM) for the analysis of DCMs for electrophysiological data. While this paper focuses on its application to the convolution-based formalism of DCMs, the new integration scheme can be equally applied to more advanced formulations of DCMs (e.g. conductance based models). Our method provides a new option for electrophysiological DCMs that offers the speed required for scientific projects, but also the accuracy required for rigorous translational applications, e.g. in computational psychiatry.
Journal Article
Pathophysiological and cognitive mechanisms of fatigue in multiple sclerosis
by
Wenderoth, Nicole
,
Manjaly, Zina-Mary
,
Harrison, Neil A
in
Atrophy
,
Brain - physiopathology
,
Brain damage
2019
Fatigue is one of the most common symptoms in multiple sclerosis (MS), with a major impact on patients’ quality of life. Currently, treatment proceeds by trial and error with limited success, probably due to the presence of multiple different underlying mechanisms. Recent neuroscientific advances offer the potential to develop tools for differentiating these mechanisms in individual patients and ultimately provide a principled basis for treatment selection. However, development of these tools for differential diagnosis will require guidance by pathophysiological and cognitive theories that propose mechanisms which can be assessed in individual patients. This article provides an overview of contemporary pathophysiological theories of fatigue in MS and discusses how the mechanisms they propose may become measurable with emerging technologies and thus lay a foundation for future personalised treatments.
Journal Article
Focus of attention modulates the heartbeat evoked potential
by
Wellstein, Katharina V.
,
Weber, Lilian A.
,
Petzschner, Frederike H.
in
Active inference
,
Brain research
,
Computational psychiatry
2019
Theoretical frameworks such as predictive coding suggest that the perception of the body and world – interoception and exteroception – involve intertwined processes of inference, learning, and prediction. In this framework, attention is thought to gate the influence of sensory information on perception. In contrast to exteroception, there is limited evidence for purely attentional effects on interoception. Here, we empirically tested if attentional focus modulates cortical processing of single heartbeats, using a newly-developed experimental paradigm to probe purely attentional differences between exteroceptive and interoceptive conditions in the heartbeat evoked potential (HEP) using EEG recordings. We found that the HEP is significantly higher during interoceptive compared to exteroceptive attention, in a time window of 524–620 ms after the R-peak. Furthermore, this effect predicted self-report measures of autonomic system reactivity. Our study thus provides direct evidence that the HEP is modulated by pure attention and suggests that this effect may provide a clinically relevant readout for assessing interoception.
[Display omitted]
Journal Article
Investigation of flow state occurrence during robotic virtual reality operations
by
Eberli, Daniel
,
Richoz, Anne-Raphaëlle
,
Poyet, Cédric
in
631/378
,
631/378/2649
,
631/378/2649/1310
2025
Flow is the optimal mental state for peak focus and performance, positively correlating with well-being. This study investigated electroencephalographical (EEG) and circulatory heart rate (HR) markers of flow during virtual reality (VR) surgical training on the da Vinci Skills Simulator. Twenty urologic surgeons participated, categorised as High or Low Performers based on VR task scores. Generalised estimating equations and Spearman’s rank correlation were used to analyse differences in EEG, HR, Flow Short Scale scores, and professional experience. High performers exhibited significantly higher Theta activity
Wald
(1) = 5.96,
p
= .015;
Wald
(1) = 5.11,
p
< .001) and a positive correlation between VR scores and flow
r
(10) = 0.63,
p
= .048). No significant HR differences were observed. The study highlights the importance of Theta activity in achieving flow, suggesting that neurofeedback and biofeedback could provide a point of departure to enhance surgical performance and well-being of surgeons and patient health.
Journal Article
Conductance-based dynamic causal modeling: A mathematical review of its application to cross-power spectral densities
by
Schöbi, Dario
,
Heinzle, Jakob
,
Gruber, Moritz
in
Bayes Theorem
,
Bayesian analysis
,
Brain - physiology
2021
•Understanding the theory behind DCM is crucial to avoid pitfalls in its application.•In this review, the equations of conductance-based DCM are derived step-by-step.•Aspects of software implementation are highlighted.•Data are simulated to provide an intuition of the model's capabilities.•The code used is freely available and provided alongside the manuscript.
Dynamic Causal Modeling (DCM) is a Bayesian framework for inferring on hidden (latent) neuronal states, based on measurements of brain activity. Since its introduction in 2003 for functional magnetic resonance imaging data, DCM has been extended to electrophysiological data, and several variants have been developed. Their biophysically motivated formulations make these models promising candidates for providing a mechanistic understanding of human brain dynamics, both in health and disease. However, due to their complexity and reliance on concepts from several fields, fully understanding the mathematical and conceptual basis behind certain variants of DCM can be challenging. At the same time, a solid theoretical knowledge of the models is crucial to avoid pitfalls in the application of these models and interpretation of their results. In this paper, we focus on one of the most advanced formulations of DCM, i.e. conductance-based DCM for cross-spectral densities, whose components are described across multiple technical papers. The aim of the present article is to provide an accessible exposition of the mathematical background, together with an illustration of the model's behavior. To this end, we include step-by-step derivations of the model equations, point to important aspects in the software implementation of those models, and use simulations to provide an intuitive understanding of the type of responses that can be generated and the role that specific parameters play in the model. Furthermore, all code utilized for our simulations is made publicly available alongside the manuscript to allow readers an easy hands-on experience with conductance-based DCM.
Journal Article
Alteration of brain dynamics during natural dual-task walking
by
Protzak, Janna
,
Nenna, Federica
,
Cao Tri Do
in
Cognitive ability
,
Computer applications
,
Event-related potentials
2020
While walking in our natural environment, we continuously solve additional cognitive tasks. This increases the demand of resources needed for both the cognitive and motor systems, resulting in Cognitive-Motor Interference (CMI). While it is well known that a performance decrease in one or both tasks can be observed, little is known about human brain dynamics underlying CMI during dual-task walking. Moreover, a large portion of previous investigations on CMI took place in static settings, emphasizing the experimental rigor but overshadowing the ecological validity. To address these problems, we developed a dual-task walking scenario in virtual reality (VR) combined with Mobile Brain/Body Imaging (MoBI). We aimed at investigating how brain dynamics are modulated during natural overground walking while simultaneously performing a visual discrimination task in an ecologically valid scenario. Even though the visual task did not affect performance while walking, a P3 amplitude reduction along with changes in power spectral densities (PSDs) during dual-task walking were observed. Replicating previous results, this reflects the impact of walking on the parallel processing of visual stimuli, even when the cognitive task is particularly easy. This standardized and easy to modify VR-paradigm helps to systematically study CMI, allowing researchers to control the complexity of different tasks and sensory modalities. Future investigations implementing an improved virtual design with more challenging cognitive and motor tasks will have to investigate the roles of both cognition and motion, allowing for a better understanding of the functional architecture of attention reallocation between cognitive and motor systems during active behavior. Footnotes * https://chart-studio.plot.ly/~federica.nenna/1/#/plot
Technical Note: A fast and robust integrator of delay differential equations in DCM for electrophysiological data
by
Schöbi, Dario
,
Tittgemeyer, Marc
,
Klaas Enno Stephan
in
Conductance
,
Integration
,
Neural networks
2020
Abstract Dynamic causal models (DCMs) of electrophysiological data allow, in principle, for inference on hidden, bulk synaptic function in neural circuits. The directed influences between the neuronal elements of modeled circuits are subject to delays due to the finite transmission speed of axonal connections. Ordinary differential equations are therefore not adequate to capture the ensuing circuit dynamics, and delay differential equations (DDEs) are required instead. Previous work has illustrated that the integration of DDEs in DCMs benefits from sophisticated integration schemes in order to ensure rigorous parameter estimation and correct model identification. However, integration schemes that have been proposed for DCMs either emphasise speed (at the possible expense of accuracy) or robustness (but with computational costs that are problematic in practice). In this technical note, we propose an alternative integration scheme that overcomes these shortcomings and offers high computational efficiency while correctly preserving the nature of delayed effects. This integration scheme is available as open-source code in the Translational Algorithms for Psychiatry-Advancing Science (TAPAS) toolbox and can be easily integrated into existing software (SPM) for the analysis of DCMs for electrophysiological data. While this paper focuses on its application to the convolution-based formalism of DCMs, the new integration scheme can be equally applied to more advanced formulations of DCMs (e.g. conductance based models). Our method provides a new option for electrophysiological DCMs that offers the speed required for scientific projects, but also the accuracy required for rigorous translational applications, e.g. in computational psychiatry. Competing Interest Statement The authors have declared no competing interest.
Focus of attention modulates the heartbeat evoked potential
2018
Theoretical frameworks such as predictive coding suggest that the perception of the body and world, interoception and exteroception, involve intertwined processes of inference, learning, and prediction. In this framework, attention is thought to gate the influence of sensory information on perception. In contrast to exteroception, there is limited evidence for purely attentional effects on interoception. Here, we empirically tested if attentional focus modulates cortical processing of single heartbeats, using a newly-developed experimental paradigm to probe purely attentional differences between exteroceptive and interoceptive conditions in the heartbeat evoked potential (HEP). We found that the HEP is significantly higher during interoceptive compared to exteroceptive attention, in a time window of 520 to 580ms after the R-peak. Furthermore, this effect predicted self-report measures of autonomic system reactivity. This study thus provides direct evidence that the HEP is modulated by attention and supports recent interpretations of the HEP as a neural correlate of interoceptive prediction errors.
Conductance-based Dynamic Causal Modeling: A mathematical review of its application to cross-power spectral densities
2021
Dynamic Causal Modeling (DCM) is a Bayesian framework for inferring on hidden (latent) neuronal states, based on measurements of brain activity. Since its introduction in 2003 for functional magnetic resonance imaging data, DCM has been extended to electrophysiological data, and several variants have been developed. Their biophysically motivated formulations make these models promising candidates for providing a mechanistic understanding of human brain dynamics, both in health and disease. However, due to their complexity and reliance on concepts from several fields, fully understanding the mathematical and conceptual basis behind certain variants of DCM can be challenging. At the same time, a solid theoretical knowledge of the models is crucial to avoid pitfalls in the application of these models and interpretation of their results. In this paper, we focus on one of the most advanced formulations of DCM, i.e. conductance-based DCM for cross-spectral densities, whose components are described across multiple technical papers. The aim of the present article is to provide an accessible exposition of the mathematical background, together with an illustration of the model's behavior. To this end, we include step-by-step derivations of the model equations, point to important aspects in the software implementation of those models, and use simulations to provide an intuitive understanding of the type of responses that can be generated and the role that specific parameters play in the model. Furthermore, all code utilized for our simulations is made publicly available alongside the manuscript to allow readers an easy hands-on experience with conductance-based DCM.
Whole-brain estimates of directed connectivity for human connectomics
by
Kasper, Lars
,
Cao Tri Do
,
Stephan, Klaas E
in
Brain architecture
,
Brain mapping
,
Cerebral cortex
2020
Connectomics is essential for understanding large-scale brain networks but requires that individual connection estimates are neurobiologically interpretable. In particular, a principle of brain organization is that reciprocal connections between cortical areas are functionally asymmetric. This is a challenge for fMRI-based connectomics in humans where only undirected functional connectivity estimates are routinely available. By contrast, whole-brain estimates of effective (directed) connectivity are computationally challenging, and emerging methods require empirical validation. Here, using a motor task at 7T, we demonstrate that a novel generative model can infer known connectivity features in a whole-brain network (>200 regions, >40,000 connections) highly efficiently. Furthermore, graph-theoretical analyses of directed connectivity estimates identify functional roles of motor areas more accurately than undirected functional connectivity estimates. These results, which can be achieved in an entirely unsupervised manner, demonstrate the feasibility of inferring directed connections in whole-brain networks and open new avenues for human connectomics.