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"Donaldson, Michael R."
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How Long Is Too Long in Contemporary Peer Review? Perspectives from Authors Publishing in Conservation Biology Journals
by
Gutowsky, Lee F. G.
,
Haddaway, Neal R.
,
Hammerschlag, Neil
in
Adult
,
Analysis
,
Atmospheric sciences
2015
Delays in peer reviewed publication may have consequences for both assessment of scientific prowess in academics as well as communication of important information to the knowledge receptor community. We present an analysis on the perspectives of authors publishing in conservation biology journals regarding their opinions on the importance of speed in peer-review as well as how to improve review times. Authors were invited to take part in an online questionnaire, of which the data was subjected to both qualitative (open coding, categorizing) and quantitative analyses (generalized linear models). We received 637 responses to a total of 6,547 e-mail invitations sent. Peer-review speed was generally perceived as slow, with authors experiencing a typical turnaround time of 14 weeks while their perceived optimal review time is six weeks. Male and younger respondents seem to have higher expectations of review speed than females and older respondents. Majority of participants attributed lengthy review times to the 'stress' on the peer-review system (i.e., reviewer and editor fatigue), while editor persistence and journal prestige were believed to speed up the review process. Negative consequences of lengthy review times appear to be greater for early career researchers and can also have impact on author morale (e.g. motivation or frustration). Competition among colleagues were also of concern to respondents. Incentivizing peer review was among the top suggested alterations to the system along with training graduate students in peer review, increased editorial persistence, and changes to the norms of peer-review such as opening the peer-review process to the public. It is clear that authors surveyed in this study view the peer-review system as under stress and we encourage scientists and publishers to push the envelope for new peer review models.
Journal Article
Physiological Benefits of Being Small in a Changing World: Responses of Coho Salmon (Oncorhynchus kisutch) to an Acute Thermal Challenge and a Simulated Capture Event
by
Hinch, Scott G.
,
Drenner, S. Matthew
,
Cooke, Steven J.
in
Air exposure
,
Analysis
,
Animal behavior
2012
Evidence is building to suggest that both chronic and acute warm temperature exposure, as well as other anthropogenic perturbations, may select for small adult fish within a species. To shed light on this phenomenon, we investigated physiological and anatomical attributes associated with size-specific responses to an acute thermal challenge and a fisheries capture simulation (exercise+air exposure) in maturing male coho salmon (Oncorhynchus kisutch). Full-size females were included for a sex-specific comparison. A size-specific response in haematology to an acute thermal challenge (from 7 to 20 °C at 3 °C h(-1)) was apparent only for plasma potassium, whereby full-size males exhibited a significant increase in comparison with smaller males ('jacks'). Full-size females exhibited an elevated blood stress response in comparison with full-size males. Metabolic recovery following exhaustive exercise at 7 °C was size-specific, with jacks regaining resting levels of metabolism at 9.3 ± 0.5 h post-exercise in comparison with 12.3 ± 0.4 h for full-size fish of both sexes. Excess post-exercise oxygen consumption scaled with body mass in male fish with an exponent of b = 1.20 ± 0.08. Jacks appeared to regain osmoregulatory homeostasis faster than full-size males, and they had higher ventilation rates at 1 h post-exercise. Peak metabolic rate during post-exercise recovery scaled with body mass with an exponent of b~1, suggesting that the slower metabolic recovery in large fish was not due to limitations in diffusive or convective oxygen transport, but that large fish simply accumulated a greater 'oxygen debt' that took longer to pay back at the size-independent peak metabolic rate of ~6 mg min(-1) kg(-1). Post-exercise recovery of plasma testosterone was faster in jacks compared with full-size males, suggesting less impairment of the maturation trajectory of smaller fish. Supporting previous studies, these findings suggest that environmental change and non-lethal fisheries interactions have the potential to select for small individuals within fish populations over time.
Journal Article
Validation of reflex indicators for measuring vitality and predicting the delayed mortality of wild coho salmon bycatch released from fishing gears
by
Hinch, Scott G.
,
Davis, Michael W.
,
Cooke, Steven J.
in
Animal migration
,
Animal migration behavior
,
Animal, plant and microbial ecology
2012
1. Effective management of fish and wildlife populations benefits from an understanding of the effects of Stressors on individual physiology. While physiological knowledge can provide a mechanistic understanding of organismal responses, its applied utility is limited because it cannot easily be used by stakeholders. 2. Reflex action mortality predictors (RAMP) is a method that involves checking for the presence or absence of natural animal reflexes to generate a condition (RAMP) score in response to Stressors and to predict fate. The method has previously been validated with fishes in artificial laboratoryand field-based holding studies as a responsive measure of fisheries capture stress and a predictor of delayed mortality, but has not been evaluated in the wild. 3. We used radio telemetry to monitor migration success of 50 endangered coho salmon Oncorhynchus kisutch following incidental capture in an aboriginal beach seine fishery in the lower Fraser River (Canada). RAMP was used to measure the condition of fish at release and to predict migration success following capture. Biopsy of an additional 43 coho profiled physiological condition at time of release. 4. Individuals with greater reflex impairment (higher RAMP scores) at release experienced significantly higher rates of migration failure. RAMP scores were also significantly correlated with fishery handling time. Plasma variables showed that captured coho had experienced physiological stress characteristic of exhaustive exercise and hypoxia, with significantly elevated cortisol and lactate values for fish entangled longer in fishing gear. 5. Synthesis and applications. This is the first validation of RAMP in a wild setting. Based on our findings, fishers could use the method and make adjustments in fishing behaviour in real-time to improve fish condition and reduce the mortality of bycatch, and conservation practitioners could monitor animal condition and identify problems that deserve management attention. RAMP is an easy, rapid and inexpensive approach to predicting mortality and measuring vitality and performed better than traditional physiological tools that cannot easily be used by stakeholders.
Journal Article
Predatory journals: no definition, no defence
by
Egger, Matthias
,
Patwardhan, Bhushan
,
Ommaya, Alexander
in
706/648/479
,
706/648/496
,
Best practice
2019
Leading scholars and publishers from ten countries have agreed a definition of predatory publishing that can protect scholarship. It took 12 hours of discussion, 18 questions and 3 rounds to reach.
Leading scholars and publishers from ten countries have agreed a definition of predatory publishing that can protect scholarship. It took 12 hours of discussion, 18 questions and 3 rounds to reach.
Journal Article
Making connections in aquatic ecosystems with acoustic telemetry monitoring
by
Heupel, Michelle R
,
Hinch, Scott G
,
Fisk, Aaron T
in
Acoustic data
,
acoustics
,
animal science
2014
Autonomous acoustic telemetry monitoring systems have been deployed in aquatic ecosystems around the globe - from under ice sheets in the Arctic to coral reefs in Australia - to track animals. With tens of thousands of tagged aquatic animals from a range of taxa, vast amounts of data have been generated. As data accumulate, it is useful to reflect on how this information has advanced our understanding of aquatic animals and improved management and conservation. Here we identify knowledge gaps and discuss opportunities to advance aquatic animal science and management using acoustic telemetry monitoring. Current technological and analytical shortfalls still need to be addressed to fully realize the potential of acoustic monitoring. Future interdisciplinary research that relies on transmitter-borne sensors and emphasizes hypothesis testing will amplify the benefits of this technology.
Journal Article
Conservation physiology in practice: how physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration
by
Hinch, Scott G.
,
Miller, Kristi
,
Cooke, Steven J.
in
Adaptation, Physiological
,
Animal Migration - physiology
,
Animal migration behavior
2012
Despite growing interest in conservation physiology, practical examples of how physiology has helped to understand or to solve conservation problems remain scarce. Over the past decade, an interdisciplinary research team has used a conservation physiology approach to address topical conservation concerns for Pacific salmon. Here, we review how novel applications of tools such as physiological telemetry, functional genomics and laboratory experiments on cardiorespiratory physiology have shed light on the effect of fisheries capture and release, disease and individual condition, and stock-specific consequences of warming river temperatures, respectively, and discuss how these findings have or have not benefited Pacific salmon management. Overall, physiological tools have provided remarkable insights into the effects of fisheries capture and have helped to enhance techniques for facilitating recovery from fisheries capture. Stock-specific cardiorespiratory thresholds for thermal tolerances have been identified for sockeye salmon and can be used by managers to better predict migration success, representing a rare example that links a physiological scope to fitness in the wild population. Functional genomics approaches have identified physiological signatures predictive of individual migration mortality. Although fisheries managers are primarily concerned with population-level processes, understanding the causes of en route mortality provides a mechanistic explanation and can be used to refine management models. We discuss the challenges that we have overcome, as well as those that we continue to face, in making conservation physiology relevant to managers of Pacific salmon.
Journal Article
On the neglected cold side of climate change and what it means to fish
2016
Over the past decade nearly all of the research on the effects of climate change on fish has focused on the effects of warmer water temperatures. Yet, it is expected that temperature variability will also increase, resulting in more frequent incidences of rapid decreases in water temperatures (i.e. cold shock). Cold shock events have caused large-scale fish mortalities, and sublethal impacts are also known to occur but are less well documented. We argue that cold shock will become an important selective force in climate change scenarios. There is a rich history of research on cold shock in the context of industrial cooling effluents and aquaculture, providing a foundation upon which to develop and extend future work on cold shock and climate change. To understand the diverse effects climate change may have on fish populations, future research needs to expand beyond the projected increases in water temperatures to include consideration of variability in temperature and the potential for cold shock.
Journal Article
Individual Variation in Migration Speed of Upriver‐Migrating Sockeye Salmon in the Fraser River in Relation to Their Physiological and Energetic Status at Marine Approach
by
Shrimpton, J. Mark
,
Van Der Kraak, Glen
,
Cooke, Steven J.
in
Animal Migration - physiology
,
Animal migration behavior
,
Animals
2008
Little research has examined individual variation in migration speeds of Pacific salmon (Oncorhynchusspp.) in natural river systems or attempted to link migratory behavior with physiological and energetic status on a large spatial scale in the wild. As a model, we used three stocks of summer‐run sockeye salmon (Oncorhynchus nerka) from the Fraser River watershed, British Columbia, to test the hypothesis that individual variation in migration speed is determined by a combination of environmental factors (i.e., water temperature), intrinsic biological differences (sex and population), and physiological and energetic condition. Before the freshwater portion of the migration, sockeye salmon (Quesnel, Chilcotin, and Nechako stock complexes) were captured in Johnstone Strait (∼215 km from river entry), gastrically implanted with radio transmitters, and sampled for blood, gill tissue, and energetic status before release. Analyses focused solely on individuals that successfully reached natal subwatersheds. Migration speeds were assessed by an extensive radiotelemetry array. Individuals from the stock complex that migrated the longest distance (Nechako) traveled at speeds slower than those of other stock complexes. Females traveled slower than males. An elevated energetic status of fish in the ocean was negatively correlated with migration speed in most river segments. During the transition from the ocean to the river, migration speed was negatively correlated with mean maximum water temperature; however, for the majority of river segments, it was positively correlated with migration speed. Physiological status measured in the ocean did not explain among‐individual variability in river migration speeds. Collectively, these findings suggest that there could be extensive variation in migration behavior among individuals, sexes, and populations and that physiological condition in the ocean explained little of this variation relative to in‐river environmental conditions and energetic status. Interestingly, individual fish generally retained their rank in swimming speed across different segments, except when transiting a challenging canyon midway during the migration.
Journal Article
Fishing for Effective Conservation
2015
Acute stressors are commonly experienced by wild animals but their effects on fitness rarely are studied in the natural environment. Billions of fish are captured and released annually around the globe across all fishing sectors (e.g., recreational, commercial, subsistence). Whatever the motivation, release often occurs under the assumption of post-release survival. Yet, capture by fisheries (hereafter “fisheries-capture”) is likely the most severe acute stressor experienced in the animal’s lifetime, which makes the problem of physiological recovery and survival of relevance to biology and conservation. Indeed, fisheries managers require accurate estimates of mortality to better account for total mortality from fishing, while fishers desire guidance on strategies for reducing mortality and maintaining the welfare of released fish, to maximize current and future opportunities for fishing. In partnership with stakeholders, our team has extensively studied the effects of catch-and-release on Pacific salmon in both marine and freshwater environments, using biotelemetry and physiological assessments in a combined laboratory-based and field-based approach. The emergent theme is that post-release rates of mortality are consistently context-specific and can be affected by a suite of interacting biotic and abiotic factors. The fishing gear used, location of a fishery, water temperature, and handling techniques employed by fishers each can dramatically affect survival of the salmon they release. Variation among individuals, co-migrating populations, and between sexes all seem to play a role in the response of fish to capture and in their subsequent survival, potentially driven by pre-capture pathogen-load, maturation states, and inter-individual variation in responsiveness to stress. Although some of these findings are fascinating from a biological perspective, they all create unresolved challenges for managers. We summarize our findings by highlighting the patterns that have emerged most consistently, and point to areas of uncertainty that require further research.
Journal Article
Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka)
2012
Elevated river water temperature in the Fraser River, British Columbia, Canada, has been associated with enhanced mortality of adult sockeye salmon (Oncorhynchus nerka) during their upriver migration to spawning grounds. We undertook a study to assess the effects of elevated water temperatures on the gill transcriptome and blood plasma variables in wild‐caught sockeye salmon. Naturally migrating sockeye salmon returning to the Fraser River were collected and held at ecologically relevant temperatures of 14°C and 19°C for seven days, a period representing a significant portion of their upstream migration. After seven days, sockeye salmon held at 19°C stimulated heat shock response genes as well as many genes associated with an immune response when compared with fish held at 14°C. Additionally, fish at 19°C had elevated plasma chloride and lactate, suggestive of a disturbance in osmoregulatory homeostasis and a stress response detectable in the blood plasma. Fish that died prematurely over the course of the holding study were compared with time‐matched surviving fish; the former fish were characterized by an upregulation of several transcription factors associated with apoptosis and downregulation of genes involved in immune function and antioxidant activity. Ornithine decarboxylase (ODC1) was the most significantly upregulated gene in dying salmon, which suggests an association with cellular apoptosis. We hypothesize that the observed decrease in plasma ions and increases in plasma cortisol that occur in dying fish may be linked to the increase in ODC1. By highlighting these underlying physiological mechanisms, this study enhances our understanding of the processes involved in premature mortality and temperature stress in Pacific salmon during migration to spawning grounds. We undertook a comprehensive study to assess the effects of elevated water temperatures on the gill transcriptome and blood plasma variables in wild‐caught salmon. After seven days of being held at the ecologically relevant temperatures of 14°C or 19°C, sockeye salmon held at 19°C stimulated heat shock response genes as well as many genes associated with an immune response when compared with fish held at 14°C in addition to having elevated plasma chloride and lactate. Time‐matched fish that died prematurely over the course of the holding study were compared with surviving fish; the former fish were characterized by an up‐regulation of several transcription factors associated with apoptosis and down‐regulation of genes involved in immune function and antioxidant activity.
Journal Article