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The coffee berry borer, Hypothenemus hampei , is the most economically important insect pest of coffee worldwide. We present an analysis of the draft genome of the coffee berry borer, the third genome for a Coleopteran species. The genome size is ca. 163 Mb with 19,222 predicted protein-coding genes. Analysis was focused on genes involved in primary digestion as well as gene families involved in detoxification of plant defense molecules and insecticides, such as carboxylesterases, cytochrome P450, gluthathione S-transferases, ATP-binding cassette transporters and a gene that confers resistance to the insecticide dieldrin. A broad range of enzymes capable of degrading complex polysaccharides were identified. We also evaluated the pathogen defense system and found homologs to antimicrobial genes reported in the Drosophila genome. Ten cases of horizontal gene transfer were identified with evidence for expression, integration into the H. hampei genome and phylogenetic evidence that the sequences are more closely related to bacterial rather than eukaryotic genes. The draft genome analysis broadly expands our knowledge on the biology of a devastating tropical insect pest and suggests new pest management strategies.

Priestia megaterium is a maize endophyte that may help the plant defend itself against bacterial and fungal pathogens. This study aimed to identify antimicrobials produced by two P. megaterium endophytes (FS10 and FS11) from maize and determine if seed coating with either strain could increase resistance to pathogens. Volatiles emitted by both isolates reduced the hyphal growth of fungi by 17–76%. Gas chromatography analysis found that each strain emitted isovaleric acid (IVA) and 3-methyl-1-butanol (3MB). Volatiles produced by each isolate inhibited bacterial growth, especially Clavibacter michiganensis ssp. michiganensis (Cmm). IVA killed all Cmm cells at 208 µL L−1, while 3MB inhibited Cmm growth by 51% at 208 µL L−1. Diluted cell-free extracts from FS10 and FS11 cultures stopped growth of Cmm, Erwinia amylovora and Ustilago maydis but did not arrest growth of Fusarium verticillioides. The treatment of corn seeds with FS10 or FS11 reduced leaf damage by 38–84% in young plants caused by Bipolaris maydis, Colletotrichum graminicola (Ces.) G.W. Wilson 1914, Exserohilum turcicum and Pythium sylvaticum. FS10 and FS11 isolates exuded volatile and soluble compounds that were more effective in slowing growth of bacteria than fungi. It is likely that corn seed treatment with FS10 and FS11 triggers induced systemic resistance, which mitigates leaf damage caused by maize pathogens.

The β-lactams are the most widely used group of antibiotics in human health and agriculture, but this is under threat due to the persistent rise of pathogenic resistance. Several compounds, including tunicamycin (TUN), can enhance the antibacterial activity of the β-lactams to the extent of overcoming resistance, but the mammalian toxicity of TUN has precluded its use in this role. Selective hydrogenation of TUN produces modified compounds (TunR1 and TunR2), which retain the enhancement of β-lactams while having much lower mammalian toxicity. Here we show that TunR1 and TunR2 enhance the antibacterial activity of multiple β-lactam family members, including penems, cephems, and third-generation penicillins, to a similar extent as does the native TUN. Eleven of the β-lactams tested were enhanced from 2 to >256-fold against Bacillus subtilis, with comparable results against a penicillin G-resistant strain. The most significant enhancements were obtained with third-generation aminothiazolidyl cephems, including cefotaxime, ceftazidime, and cefquinome. These results support the potential of low toxicity tunicamycin analogs (TunR1 and TunR2) as clinically valid, synergistic enhancers for a broad group of β-lactam antibiotics.

Mycotoxin presence in maize causes health and economic issues for humans and animals. Although many studies have investigated expression differences of genes putatively governing resistance to producing fungi, few have confirmed a resistance role, or examined putative resistance gene structure in more than a couple of inbreds. The pericarp expression of maize Px5 has previously been associated with resistance to Aspergillus flavus growth and insects in a set of inbreds. Genes from 14 different inbreds that included ones with resistance and susceptibility to A. flavus, Fusarium proliferatum, F. verticillioides and F. graminearum and/or mycotoxin production were cloned using high fidelity enzymes, and sequenced. The sequence of Px5 from all resistant inbreds was identical, except for a single base change in two inbreds, only one of which affected the amino acid sequence. Conversely, the Px5 sequence from several susceptible inbreds had several base variations, some of which affected amino acid sequence that would potentially alter secondary structure, and thus enzyme function. The sequence of the maize peroxidase Px5 common to inbreds resistant to mycotoxigenic fungi was overexpressed in maize callus. Callus transformants overexpressing the gene caused significant reductions in growth for fall armyworms, corn earworms, and F. graminearum compared to transformant callus with a β-glucuronidase gene. This study demonstrates rarer transcripts of potential resistance genes overlooked by expression screens can be identified by sequence comparisons. A role in pest resistance can be verified by callus expression of the candidate genes, which can thereby justify larger scale transformation and regeneration of transgenic plants expressing the resistance gene for further evaluation.

Tar spot disease in corn, caused by Phyllachora maydis, can reduce grain yield by limiting the total photosynthetic area in leaves. Stromata of P. maydis are long-term survival structures that can germinate and release spores in a gelatinous matrix in the spring, which are thought to serve as inoculum in newly planted fields. In this study, overwintered stromata in corn leaves were collected in Central Illinois, surface sterilized, and caged on water agar medium. Fungi and bacteria were collected from the surface of stromata that did not germinate and showed microbial growth. Twenty-two Alternaria isolates and three Cladosporium isolates were collected. Eighteen bacteria, most frequently Pseudomonas and Pantoea species, were also isolated. Spores of Alternaria, Cladosporium, and Gliocladium catenulatum (formulated as a commercial biofungicide) reduced the number of stromata that germinated compared to control untreated stromata. These data suggest that fungi collected from overwintered tar spot stromata can serve as biological control organisms against tar spot disease.

Three amino acid-derived compounds, haenamindole ( 1 ) and 2'- epi -fumiquinazolines C ( 2 ) and D ( 3 ), were isolated from cultures of a fungicolous isolate of Penicillium lanosum (MYC-1813=NRRL 66231). Compound 1 was also encountered in cultures of P. corylophilum (MYC-418=NRRL 28126). Structure elucidation of these metabolites was based mainly on high resolution mass spectrometry and NMR data analysis. Haenamindole ( 1 ) was found to be a recently reported diketopiperazine-type metabolite that incorporates an unusual β-Phe unit. Analysis of X-ray crystallographic data and the products of acid hydrolysis of 1 enabled a conclusive, slightly modified stereochemical assignment for haenamindole. Fumiquinazoline analog 2 is a new natural product, while related compound 3 has been previously reported only as a product of an in vitro enzymatic step and of a genetically engineered fungal culture. Compounds 1 and 3 showed antiinsectan activity against the fall armyworm Spodoptera frugiperda .

The phenylpropanoid pathway in plants synthesizes a variety of structural and defence compounds, and is an important target in efforts to reduce cell wall lignin for improved biomass conversion to biofuels. Little is known concerning the trade-offs in grasses when perturbing the function of the first gene family in the pathway, PHENYLALANINE AMMONIA LYASE (PAL). Therefore, PAL isoforms in the model grass Brachypodium distachyon were targeted, by RNA interference (RNAi), and large reductions (up to 85%) in stem tissue transcript abundance for two of the eight putative BdPAL genes were identified. The cell walls of stems of BdPAL-knockdown plants had reductions of 43% in lignin and 57% in cell wall-bound ferulate, and a nearly 2-fold increase in the amounts of polysaccharide-derived carbohydrates released by thermochemical and hydrolytic enzymic partial digestion. PAL-knockdown plants exhibited delayed development and reduced root growth, along with increased susceptibilities to the fungal pathogens Fusarium culmorum and Magnaporthe oryzae. Surprisingly, these plants generally had wild-type (WT) resistances to caterpillar herbivory, drought, and ultraviolet light. RNA sequencing analyses revealed that the expression of genes associated with stress responses including ethylene biosynthesis and signalling were significantly altered in PAL knocked-down plants under non-challenging conditions. These data reveal that, although an attenuation of the phenylpropanoid pathway increases carbohydrate availability for biofuel, it can adversely affect plant growth and disease resistance to fungal pathogens. The data identify notable differences between the stress responses of these monocot pal mutants versus Arabidopsis (a dicot) pal mutants and provide insights into the challenges that may arise when deploying phenylpropanoid pathway-altered bioenergy crops.

Anthocyanins are likely a visual aid that attract pollinators. However, there is also the possibility that anthocyanins are present in some flowers as defensive molecules that protect them from excess light, pathogens, or herbivores. In this study, resistance due to anthocyanins from commercial petunia flowers (Petunia hybrida) was examined for insecticide/antifeedant activity against corn earworm (CEW, Helicoverpa zea) and cabbage looper (CL, Trichoplusia ni). The petunia flowers studied contained a star pattern, with colored and white sectors. CEW larvae ate significantly less colored sectors than white sectors in no-choice bioassays in most cases. All CEW larvae feeding on blue sectors weighed significantly less after 2 days than larvae feeding on white sectors, which was negatively correlated with total anthocyanin levels. CL larvae ate less of blue sectors than white sectors, and blue sectors from one petunia cultivar caused significantly higher CL mortality than white sectors. Partially purified anthocyanin mixtures isolated from petunia flowers, when added to insect diet discs at approximately natural concentrations, reduced both CEW and CL larva weights compared to the controls. These studies demonstrate that the colored sectors of these petunia cultivars slow the development of these lepidopteran larvae and indicate that anthocyanins play some part in flower defense in petunia.

Use of microorganisms to manage insect pests is a strategy compatible with organic production, but variability in their effectiveness limits the adoption by growers. Prior reports indicated that increased resistance to a fungal plant pathogen in dent maize inbreds was associated with reduced efficacy of the commercialized fungal biocontrol agent Beauveria bassiana in killing maize caterpillar pests, but this aspect has not been investigated with sweet corn. Several varieties of sweet corn certified for organic production, along with sweet corn inbreds that have been used in breeding commercial sweet corn hybrids, were evaluated for their influence on the efficacy of two commercial strains of Beauveria bassiana . As occurred in prior dent corn studies, significant differences were noted in mortality levels on day 2 for European corn borers (ranging from as much as 14.9 to 58.6%) and fall armyworms (ranging from as much as 12.1 to 46.0%) depending on the sweet corn hybrids and inbreds. Higher rates of leaf colonization by B. bassiana were associated with larger lesion sizes caused by the maize pathogen Fusarium graminearum for both hybrids and inbreds. However, greater efficacy of B. bassiana in killing insects was associated with smaller lesion sizes caused by F. graminearum for some organic production sweet corn hybrids. This information indicates it is possible to develop sweet corn varieties that are both resistant to fungal pathogens and compatible with use of B. bassiana and suggests this aspect can be further improved to promote more effective organic production of sweet corn.

A Gram-stain positive, aerobic, motile, rod-shaped bacterium designated as strain CBP-2801T was isolated as a contaminant from a culture containing maize callus in Peoria, Illinois, United States. The strain is unique relative to other Cohnella species due to its slow growth and reduced number of sole carbon sources. Phylogenetic analysis using 16S rRNA indicated that strain CBP-2801T is a Cohnella bacterium and showed the highest similarity to Cohnella xylanilytica (96.8%). Genome-based phylogeny and genomic comparisons based on average nucleotide identity confirmed the strain to be a novel species of Cohnella. Growth occurs at 15–45 °C (optimum 40 °C), pH 5–7 (optimum pH 6) and with 0–1% NaCl. The predominant fatty acids are anteiso-15:0 and 18:1 ω6c. Genome mining for secondary metabolites identified a putative biosynthetic cluster that encodes for a novel lasso peptide. In addition, this study contributes five new genome assemblies of type strains of Cohnella species, a genus with less than 30% of the type strains sequenced. The DNA G + C content is 58.7 mol %. Based on the phenotypic, phylogenetic and biochemical data strain CBP-2801T represents a novel species, for which the name Cohnella zeiphila sp. nov. is proposed. The type strain is CBP-2801T (= DSM 111598 = ATCC TSD-230).