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51 result(s) for "Dudás, Dániel"
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Phylogenetic insights into the genetic legacies of Hungarian-speaking communities in the Carpathian Basin
This study focuses on exploring the uniparental genetic lineages of Hungarian-speaking minorities residing in rural villages of Baranja (Croatia) and the Zobor region (Slovakia). We aimed to identify ancestral lineages by examining genetic markers distributed across the entire mitogenome and on the Y-chromosome. This allowed us to discern disparities in regional genetic structures within these communities. By integrating our newly acquired genetic data from a total of 168 participants with pre-existing Eurasian and ancient DNA datasets, our goal was to enrich the understanding of the genetic history trajectories of Carpathian Basin populations. Our findings suggest that while population-based analyses may not be sufficiently robust to detect fine-scale uniparental genetic patterns with the sample sizes at hand, phylogenetic analysis of well-characterized Y-chromosomal Short Tandem Repeat (STR) data and entire mitogenome sequences did uncover multiple lineage ties to far-flung regions and eras. While the predominant portions of both paternal and maternal DNA align with the East-Central European spectrum, rarer subhaplogroups and lineages have unveiled ancient ties to both prehistoric and historic populations spanning Europe and Eastern Eurasia. This research augments the expansive field of phylogenetics, offering critical perspectives on the genetic constitution and heritage of the communities in East-Central Europe.
“Lyric Movement” for violin, winds and electronics
Lyric Movement for Violin, Winds and Electronics is a musical composition for solo violin concertante and an orchestra comprised of wind and brass instruments with real-time computer-generated sound synthesis played by a keyboard player. The electronic part is not meant to come to the fore as a soloistic part, but rather serves as an enhancement to the musical and timbral texture of the orchestra, playing a coloristic background role in some sense analogous to that which may might normally be filled by the harp, percussion or even string section in a larger orchestra. The pitches in electronic part sound as notated. The sound synthesis engine used in the composition was programmed in the C programming language by the composer. It employs physical modeling synthesis techniques whereby the sound produced is calculated not by simulating the resulting waveform of a given instrument, but rather by modeling sound-producing objects, and allowing the sound to result from their interaction in space. The modeled objects in the electronic part are strings played by wind exitations and hammered interactions. There are two playing modes for the electronics: with and without pedal. The use of the pedal does not provide a sustain as it does on the piano, but rather serves to eliminate the sharp hammered attack of the notes played.
Comparative Analysis of Nickel–Titanium Instrumentation Systems for Root Canal Anatomy Preservation: An In Vitro Study
This study aimed to evaluate the efficacy of various nickel–titanium (Ni-Ti) root canal instrumentation systems in preserving root canal anatomy, focusing on their capacity to limit changes in canal angulation. One hundred canals in fifty extracted human molars were prepared with different techniques: Step-Back, Reciproc, MTwo, ProTaper Universal (PTU), and ProTaper Next (PTN). The curvature of each canal was measured before and after treatment using Schneider’s methodology, a widely accepted method for assessing canal curvature. Descriptive and statistical analyses, including the Kruskal–Wallis test, were employed to compare angular changes across the systems. The results indicated that all techniques effectively reduced canal curvature, with each system exhibiting a reduction in mean canal angle after instrumentation. Although the Reciproc system showed the smallest mean change in angulation, no statistically significant differences were identified between any of the systems (p = 0.182). This finding suggests that while minor differences in performance may exist, they do not translate into clinically meaningful distinctions in preserving root canal anatomy. The Reciproc system’s slight advantage aligns with other studies, highlighting its conservative design and minimal dentinal stress; however, its superiority was not statistically validated in this study. The results suggest that all five systems are clinically comparable in preserving root canal anatomy, highlighting that dentists can choose from these widely available techniques without compromising anatomical preservation. While this study had limitations, including a relatively small sample size and an in vitro design, it aligns with previous findings on the mechanical behavior of Ni-Ti systems in endodontic practice.
Forensic investigation of war graves from WWI and WWII in Hungary
•War grave care was in difficult situation in Hungary during the last 65 years.•Nowadays a stable institutionalized, multidisciplinary war grave care in Hungary.•Methodology based on archaeology and experience of foreign war grave care partners.•Identification is based on previous researches, fieldwork and osteological analysis.•Molecular genetic methods are also available during the identification. The Hungarian war grave care professionals weren’t in an easy situation when they started the work because, until 2012, the burial places of Hungarian soldiers had no legal protection. It was necessary to develop legal regulations and scientific methods. Since this is a multidisciplinary field, the work is quite compound as many professionals from different field of sciences work together. This work requires the harmonic work of military historians, archaeologists, anthropologists and geneticists. Thanks to the conscientious work of these professionals, nowadays, we can talk about a stable institutionalized, multidisciplinary war grave care in Hungary which encompasses the work of the above-mentioned professionals. Thanks to scientific development, new opportunities are available for the professionals to identify war heroic deads. In this article, the history and the formation of the Hungarian war grave care are introduced and the methodology of the Hungarian war grave care professionals work is shown. The paper also aims to illustrate the changes in laws and the standard practice currently followed by professionals during the exploration and the processing of the human remains.
Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey
Traditional methods for molecular epidemiology of Neisseria gonorrhoeae are suboptimal. Whole-genome sequencing (WGS) offers ideal resolution to describe population dynamics and to predict and infer transmission of antimicrobial resistance, and can enhance infection control through linkage with epidemiological data. We used WGS, in conjunction with linked epidemiological and phenotypic data, to describe the gonococcal population in 20 European countries. We aimed to detail changes in phenotypic antimicrobial resistance levels (and the reasons for these changes) and strain distribution (with a focus on antimicrobial resistance strains in risk groups), and to predict antimicrobial resistance from WGS data. We carried out an observational study, in which we sequenced isolates taken from patients with gonorrhoea from the European Gonococcal Antimicrobial Surveillance Programme in 20 countries from September to November, 2013. We also developed a web platform that we used for automated antimicrobial resistance prediction, molecular typing (N gonorrhoeae multi-antigen sequence typing [NG-MAST] and multilocus sequence typing), and phylogenetic clustering in conjunction with epidemiological and phenotypic data. The multidrug-resistant NG-MAST genogroup G1407 was predominant and accounted for the most cephalosporin resistance, but the prevalence of this genogroup decreased from 248 (23%) of 1066 isolates in a previous study from 2009–10 to 174 (17%) of 1054 isolates in this survey in 2013. This genogroup previously showed an association with men who have sex with men, but changed to an association with heterosexual people (odds ratio=4·29). WGS provided substantially improved resolution and accuracy over NG-MAST and multilocus sequence typing, predicted antimicrobial resistance relatively well, and identified discrepant isolates, mixed infections or contaminants, and multidrug-resistant clades linked to risk groups. To our knowledge, we provide the first use of joint analysis of WGS and epidemiological data in an international programme for regional surveillance of sexually transmitted infections. WGS provided enhanced understanding of the distribution of antimicrobial resistance clones, including replacement with clones that were more susceptible to antimicrobials, in several risk groups nationally and regionally. We provide a framework for genomic surveillance of gonococci through standardised sampling, use of WGS, and a shared information architecture for interpretation and dissemination by use of open access software. The European Centre for Disease Prevention and Control, The Centre for Genomic Pathogen Surveillance, Örebro University Hospital, and Wellcome.
Nerve Growth Factor (NGF)—Receptor Survival Axis in Head and Neck Squamous Cell Carcinoma
Neurotrophins and their receptors might regulate cell survival in head and neck squamous cell carcinoma (HNSCC). mRNA expression of nerve growth factor (NGF) and protein synthesis of high (NTRK1) and low affinity neurotrophin (p75 neurotrophin receptor; NTR) receptors were investigated in normal oral mucosa and in HNSCC. HNSCC cell lines were treated with mitomycin C (MMC) and cell survival was investigated. Normal and malignant epithelial cells expressed NGF mRNA. NTRK1 was upregulated in 80% of HNSCC tissue, and 50% of HNSCC samples were p75NTR positive. Interestingly, in HNSCC tissue: NTRK1 and p75NTR immunohistochemical reactions were mutually exclusive. Detroit 562 cell line contained only p75NTR, UPCI-SCC090 cells synthesized NTRK1 but not p75NTR and SCC-25 culture had p75NTR and NTRK1 in different cells. NGF (100 ng/mL) significantly improved (1.4-fold) the survival of cultured UPCI-SCC090 cells after MMC-induced cell cycle arrest, while Detroit 562 cells with high levels of p75NTR did not even get arrested by single short MMC treatment. p75NTR in HNSCC might be related with NGF-independent therapy resistance, while NTRK1 might transduce a survival signal of NGF and contribute in this way to improved tumor cell survival after cell cycle arrest.
Predictive analysis visualization component in simulated data streams
One of the most significant problems related to Big Data is their analysis with the use of various methods from the area of descriptive statistics or machine and deep learning. This process is interesting in both—static datasets containing various data sources which do not change over time, and dynamic datasets collected with the use of ambient data sources, which measure a number of attribute values over long periods. Since access to actual dynamic data systems is demanding, the focus of this work is put on the design and implementation of a framework usable in a simulation of data streams, their processing and subsequent dynamic predictive and visual analysis. The proposed system is experimentally verified in the context of a case study conducted on an environmental variable dataset, which was measured with the use of a real-life sensor network.
Separation of cell survival, growth, migration, and mesenchymal transdifferentiation effects of fibroblast secretome on tumor cells of head and neck squamous cell carcinoma
Fibroblasts play a central role in tumor invasion, recurrence, and metastasis in head and neck squamous cell carcinoma. The aim of this study was to investigate the influence of tumor cell self-produced factors and paracrine fibroblast–secreted factors in comparison to indirect co-culture on cancer cell survival, growth, migration, and epithelial–mesenchymal transition using the cell lines SCC-25 and human gingival fibroblasts. Thereby, we particularly focused on the participation of the fibroblast-secreted transforming growth factor beta-1.Tumor cell self-produced factors were sufficient to ensure tumor cell survival and basic cell growth, but fibroblast-secreted paracrine factors significantly increased cell proliferation, migration, and epithelial–mesenchymal transition–related phenotype changes in tumor cells. Transforming growth factor beta-1 generated individually migrating disseminating tumor cell groups or single cells separated from the tumor cell nest, which were characterized by reduced E-cadherin expression. At the same time, transforming growth factor beta-1 inhibited tumor cell proliferation under serum-starved conditions. Neutralizing transforming growth factor beta antibody reduced the cell migration support of fibroblast-conditioned medium. Transforming growth factor beta-1 as a single factor was sufficient for generation of disseminating tumor cells from epithelial tumor cell nests, while other fibroblast paracrine factors supported tumor nest outgrowth. Different fibroblast-released factors might support tumor cell proliferation and invasion, as two separate effects.
Stability and vacuum energy in open string models with broken supersymmetry
A bstract We construct type I string models with supersymmetry broken by compactifi- cation that are non-tachyonic and have exponentially small effective potential at one-loop. All open string moduli can be stabilized, while the closed string moduli remain massless at one-loop. The backgrounds of interest have rigid Wilson lines by the use of stacked branes, and some models should have heterotic duals. We also present non-tachyonic backgrounds with positive potentials of runaway type at one-loop. This class of models could be used to test various swampland conjectures.
Insights into the substrate binding mechanism of SULT1A1 through molecular dynamics with excited normal modes simulations
Sulfotransferases (SULTs) are phase II drug-metabolizing enzymes catalyzing the sulfoconjugation from the co-factor 3′-phosphoadenosine 5′-phosphosulfate (PAPS) to a substrate. It has been previously suggested that a considerable shift of SULT structure caused by PAPS binding could control the capability of SULT to bind large substrates. We employed molecular dynamics (MD) simulations and the recently developed approach of MD with excited normal modes (MDeNM) to elucidate molecular mechanisms guiding the recognition of diverse substrates and inhibitors by SULT1A1. MDeNM allowed exploring an extended conformational space of PAPS-bound SULT1A1, which has not been achieved up to now by using classical MD. The generated ensembles combined with docking of 132 SULT1A1 ligands shed new light on substrate and inhibitor binding mechanisms. Unexpectedly, our simulations and analyses on binding of the substrates estradiol and fulvestrant demonstrated that large conformational changes of the PAPS-bound SULT1A1 could occur independently of the co-factor movements that could be sufficient to accommodate large substrates as fulvestrant. Such structural displacements detected by the MDeNM simulations in the presence of the co-factor suggest that a wider range of drugs could be recognized by PAPS-bound SULT1A1 and highlight the utility of including MDeNM in protein–ligand interactions studies where major rearrangements are expected.