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result(s) for
"Ebenezer, Oluwakemi"
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A Review of the Recent Development in the Synthesis and Biological Evaluations of Pyrazole Derivatives
by
Tuszynski, Jack A.
,
Shapi, Michael
,
Ebenezer, Oluwakemi
in
biological activities
,
derivatives
,
Drug development
2022
Pyrazoles are five-membered heterocyclic compounds that contain nitrogen. They are an important class of compounds for drug development; thus, they have attracted much attention. In the meantime, pyrazole derivatives have been synthesized as target structures and have demonstrated numerous biological activities such as antituberculosis, antimicrobial, antifungal, and anti-inflammatory. This review summarizes the results of published research on pyrazole derivatives synthesis and biological activities. The published research works on pyrazole derivatives synthesis and biological activities between January 2018 and December 2021 were retrieved from the Scopus database and reviewed accordingly.
Journal Article
A Review of the Recent Developments of Molecular Hybrids Targeting Tubulin Polymerization
by
Tuszynski, Jack A.
,
Shapi, Michael
,
Ebenezer, Oluwakemi
in
Binding sites
,
Cancer therapies
,
Cell cycle
2022
Microtubules are cylindrical protein polymers formed from αβ-tubulin heterodimers in the cytoplasm of eukaryotic cells. Microtubule disturbance may cause cell cycle arrest in the G2/M phase, and anomalous mitotic spindles will form. Microtubules are an important target for cancer drug action because of their critical role in mitosis. Several microtubule-targeting agents with vast therapeutic advantages have been developed, but they often lead to multidrug resistance and adverse side effects. Thus, single-target therapy has drawbacks in the effective control of tubulin polymerization. Molecular hybridization, based on the amalgamation of two or more pharmacophores of bioactive conjugates to engender a single molecular structure with enhanced pharmacokinetics and biological activity, compared to their parent molecules, has recently become a promising approach in drug development. The practical application of combined active scaffolds targeting tubulin polymerization inhibitors has been corroborated in the past few years. Meanwhile, different designs and syntheses of novel anti-tubulin hybrids have been broadly studied, illustrated, and detailed in the literature. This review describes various molecular hybrids with their reported structural–activity relationships (SARs) where it is possible in an effort to generate efficacious tubulin polymerization inhibitors. The aim is to create a platform on which new active scaffolds can be modeled for improved tubulin polymerization inhibitory potency and hence, the development of new therapeutic agents against cancer.
Journal Article
Recent Update on siRNA Therapeutics
by
Olanlokun, John Oludele
,
Tuszynski, Jack A.
,
Oyebamiji, Abel Kolawole
in
Animals
,
Bioavailability
,
Cancer
2025
Small interfering RNA (siRNA) has been deemed a promising therapeutic method for treating diverse diseases. siRNA-based therapeutics provide a distinct mechanism of action by selectively targeting and silencing disease-causing genes at the post-transcriptional level. This paper provides an overview of the present state of siRNA-based therapeutics, highlighting their potential in different therapeutic areas. The first section of this review introduces the basic principles of siRNA technology, including its mechanism of action and delivery methods. Subsequently, we discuss the impediments associated with siRNA delivery and manufacturing development and the strategies for overcoming these obstacles. The clinical advancement of siRNA therapeutics in various disease areas, including cancer, genetic disorders, viral infections, and inflammatory diseases, is summarized. Lastly, we summarize the successes, failures, and lessons learned from the development of siRNAs. With advancements in delivery systems and improvements in target selection, the field of medicine can be revolutionized, and siRNA therapeutics can offer new treatment options for patients.
Journal Article
Promising inhibitors against main protease of SARS CoV-2 from medicinal plants: In silico identification
2022
Some compounds reported as active against SARS CoV were selected, and docking studies were performed using the main protease of SARS CoV-2 as the receptor. The docked complex analysis shows that the ligands selectively bind with the target residues and binding affinity of amentoflavone (–10.1 kcal mol
), isotheaflavin-3’-gallate (–9.8 kcal mol
), tomentin A and D (–8.0 and –8.8 kcal mol
), theaflavin-3,3’-digallate (–8.6 kcal mol
), papyriflavonol A (–8.4 kcal mol
), iguesterin (–8.0 kcal mol
) and savinin (–8.3 kcal mol
) were ranked above the binding affinity of the reference, co-crystal ligand, ML188, a furan-2-carboxamide-based compound. To pinpoint the drug-like compound among the top-ranked compounds, the Lipinski’s rule of five and pharmacokinetic properties of all the selected compounds were evaluated. The results detailed that savinin exhibits high gastrointestinal absorption and can penetrate through the blood-brain barrier. Also, modifying these natural scaffolds with excellent binding affinity may lead to discovering of anti-SARS CoV agents with promising safety profiles.
Journal Article
Antibacterial evaluation and molecular docking studies of pyrazole–thiosemicarbazones and their pyrazole–thiazolidinone conjugates
by
Ebenezer Oluwakemi
,
Singh Parvesh
,
Singh-Pillay Ashona
in
Gram-positive bacteria
,
Staphylococcus infections
2021
A library of pyrazole–thiazolidinone conjugates was synthesized using a molecular hybridization approach through a Vilsmeier–Haack reaction. The compounds were tested for anti-microbial activity against two Gram-positive bacteria (Staphylococcus aureus and methicillin-resistant Staphylococcus aureus) and four Gram-negative bacteria (Escherichia coli, Salmonella typhimurium, Klebsiella pneumonia and Pseudomonas aeruginosa). Among the compounds tested, 3-((2,4-dichlorophenyl)-1-(2,4-dinitrophenyl)-1H-pyrazol-yl)methylene)hydrazinecarbothioamide (3a) and 2-((3-(2-chlorophenyl)-1-(2,4 dinitrophenyl)-1H-pyrazol-4-yl)methyleneamino)thiazolidin-4-one (4b) emerged as the most potent anti-microbial compounds with minimum bactericidal concentrations of < 0.2 µM against MRSA and S. aureus. Structure–activity relationship analysis further revealed that the presence of 2,4-dichloro moiety surprisingly influenced the activity of the compounds. Molecular docking studies of the compounds into the crystal structure of topoisomerase II and topoisomerase IV suggest that compounds 3a and 4b preferably interact with the targets through hydrogen bonding.
Journal Article
Studies on the mitochondrial, immunological and inflammatory effects of solvent fractions of Diospyros mespiliformis Hochst in Plasmodium berghei-infected mice
by
Olanlokun, John Oludele
,
Koorbanally, Neil Anthony
,
Ayeni, MoyinOluwa
in
631/154
,
631/250
,
631/45
2021
The use of medicinal plants in the treatment of malaria is gaining global attention due to their efficacy and cost effectiveness. This study evaluated the bioactivity-guided antiplasmodial efficacy and immunomodulatory effects of solvent fractions of
Diospyros mespiliformis
in mice infected with a susceptible strain of
Plasmodium berghei
(NK 65). The crude methanol extract of the stem of
D. mespiliformis
(DM) was partitioned between
n
-hexane, dichloromethane, ethyl acetate and methanol. Male Swiss mice (20 ± 2 g) infected with
P. berghei
were grouped and treated with vehicle (10 mL/kg, control), Artemether lumefantrine (10 mg/kg), 100, 200 and 400 mg/kg of
n
-hexane, dichloromethane, ethyl acetate and methanol fractions of
D. mespiliformis
for seven days. Blood was obtained for heme and hemozoin contents while serum was obtained for inflammatory cytokines and immunoglobulins G and M assessments. Liver mitochondria were isolated for mitochondrial permeability transition (mPT), mitochondrial F
1
F
0
ATPase (mATPase) and lipid peroxidation (mLPO) assays. The GC–MS was used to identify the compounds present in the most potent fraction. The dichloromethane fraction had the highest parasite clearance and improved hematological indices relative to the drug control. The heme values increased, while the hemozoin content significantly (
P
< 0.05) decreased compared with the drug control. The highest dose of HF and MF opened the mPT pore while the reversal effects of DF on mPT, mATPase and mLPO were dose-dependent. The levels of IgG, IgM and TNFα in the DF group were significantly higher than the drug control, while the IL-1
β
and IL-6 values did not vary linearly with the dose. Lupeol and Stigmastan-3,5-diene were the most abundant phytochemicals in the DF. The outcome of this study showed that the DF has immunomodulatory effects in infected mice, reduced proliferation of the malaria parasite and thus protect liver cells.
Journal Article
Unveiling of Pyrimidindinones as Potential Anti-Norovirus Agents—A Pharmacoinformatic-Based Approach
by
Damoyi, Nkululeko
,
Jordaan, Maryam A.
,
Shapi, Michael
in
Antiviral Agents - chemistry
,
Antiviral Agents - pharmacology
,
Antiviral drugs
2022
The RNA-dependent RNA polymerase (RdRp) receptor is an attractive target for treating human norovirus (HNV). A computer-aided approach like e-pharmacophore, molecular docking, and single point energy calculations were performed on the compounds retrieved from the Development Therapeutics Program (DTP) AIDS Antiviral Screen Database to identify the antiviral agent that could target the HNV RdRp receptor. Induced-fit docking (IFD) results showed that compounds ZINC1617939, ZINC1642549, ZINC6425208, ZINC5887658 and ZINC32068149 bind with the residues in the active site-B of HNV RdRp receptor via hydrogen bonds, salt bridge, and electrostatic interactions. During the molecular dynamic simulations, compounds ZINC6425208, ZINC5887658 and ZINC32068149 displayed an unbalanced backbone conformation with HNV RdRp protein, while ZINC1617939 and ZINC1642549 maintained stability with the protein backbone when interacting with the residues. Hence, the two new concluding compounds discovered by the computational approach can be used as a chemotype to design promising antiviral agents aimed at HNV RdRp.
Journal Article
In vitro anti-diabetic activity and molecular docking studies of Amaranthus cruentus, Amaranthus hybridus and isolated compounds
by
Nkobole, Nolitha
,
Prinsloo, Gerhard
,
Ebenezer, Oluwakemi
in
absorption
,
acarbose
,
alpha-amylase
2025
Background
Amaranthus
species are traditional leafy vegetable also reputed for their potential in managing metabolic disorders, including diabetes. In previous investigations conducted by our group, extracts from
Amaranthus cruentus
and
Amaranthus hybridus
, along with isolated compounds, exhibited strong
α
-glucosidase enzyme and moderate
α
-amylase inhibition in vitro.
Methods
The present study evaluated the antidiabetic effects of extracts and isolated compounds on C3A hepatocytes and L6 myoblasts. In addition, to elucidate the potential molecular mechanisms behind the observed enzymatic inhibition, we conducted docking studies of the isolated compounds against
α
-glucosidase and
α
-amylase. The finely powdered leaf samples were mixed with methanol and extracted using a cold maceration process. Three compounds were obtained from the aerial sections of the plant material using silica gel chromatography. Glucose metabolism of the extracts and the isolated compounds was carried out using L6 myoblasts and C3A cells.
Results
The plant extracts of
A. cruentus
and
A. hybridus
and isolated compounds; palmitic acid and
α
-spinasterol, were found to stimulate glucose uptake in L6 myoblasts and C3A cells at 31.25 µg/mL,
A. cruentus
and
A. hybridus
stimulated glucose uptake by 15.67% and 15.95%, respectively, while insulin (10 µg/mL) boosted glucose uptake by 27.1% in L6 myoblasts, although their mechanisms of action remained unclear. Palmitic acid and
α
-spinasterol enhanced glucose uptake in L6 myoblasts by 28.88% and 21.61%, respectively. After 48 h of pre-treatment, only α-spinasterol showed a significant increase in glucose absorption (56.82%) in L6 myoblasts at a treatment dose of 62.5 µg/mL, while insulin showed a glucose uptake of 78.02%.
A. hybridus
demonstrated significant glucose uptake (20.86%) in C3A hepatocytes after 24 h of pre-treatment at a dosage of 15.63 µg/mL, in contrast to insulin, which enhanced glucose uptake by 34.8% at 10 µg/mL. Compared to acarbose with a binding affinity of -7.7 Kcal/mol, palmitic acid,
α
-spinasterol and pheophorbide A-methyl ester showed the binding affinities of -5.7 Kcal/mol, -7.6 Kcal/mol and − 7.8 Kcal/mol respectively, on
α
-glucosidase. Acarbose showed a comparable binding affinity of -6 Kcal/mol to those of pheophorbide A-methyl ester and
α
-spinasterol, which showed the binding scores of -6.7 Kcal/mol and − 6.8 Kcal/mol, respectively.
Conclusion
This study validates
A. cruentus
and
A. hybridus
’s traditional use for the treatment of diabetes mellitus. Future studies will investigate the underlying mechanisms by which the extracts and compounds enhance glucose uptake in L6 myoblasts and C3A hepatocytes. Additionally, to provide a more comprehensive understanding of the antidiabetic potential of the
Amaranthus
extracts and compounds, in vivo experiments using appropriate animal models will be conducted.
Journal Article
Computer aided study on cyclic tetrapeptide based ligands as potential inhibitors of Proplasmepsin IV
by
Akintelu, Sunday A.
,
Oyebamiji, Abel Kolawole
,
Akintayo, Cecilia O.
in
134-Oxadiazole derivatives
,
631/114
,
631/45
2025
The belief that we could always stay ahead of the pathogens was forced upon scientists in the whole world by antimicrobial resistance. According to several reports, there are medications that are yet to be made public in the pipeline and there are little motivations to design novel antimicrobials to combat the worldwide drug resistance issues. Presently, the desire to design and develop efficient novel anti-bacterial agents is very high by researchers; thus, this study focuses on identifying the interactions between the studied ligands and Proplasmepsin IV, as well as examining the relationship between the calculated descriptors and binding affinities. This work shows successful prediction of the reacting and inhibiting efficiency of ten (10) cyclic tetra-peptides using insilico method. The optimization of the studied compound revealed the proficiency of methyl (3S,9S,12S)-12-(1,3-dioxoisoindolin-2-yl)-9-(2-(methylthio)ethyl)-5,8,11-trioxo-4,7,10-triaza-1(1,3)-benzenacyclotridecaphane-3-carboxylate (
F5
) and 2-((3S,9S,12S)-12-(1,3-dioxoisoindolin-2-yl)-3-(methoxycarbonyl)-5,8,11-trioxo-4,7,10-triaza-1(1,3)-benzenacyclotridecaphane-9-yl)acetic acid (F7) to react more than the remaining molecules in term of HOMO and LUMO energies. In comparison, compound F9 demonstrated a higher inhibitory activity than the reference drug, Chloroquine, based on binding affinity. Molecular dynamics simulations over a 100 ns period further explored the binding affinity between
F9
and the reference drug. The results showed that the reference drug (− 21.91 ± 1.16 kcal/mol) had a slightly stronger binding affinity than the F9_complex (− 13.85 ± 0.72 kcal/mol). Additionally, pharmacokinetic studies for F9 were compared with those of the reference compound and presented accordingly.
Journal Article
Discovery of Potential Inhibitors for RNA-Dependent RNA Polymerase of Norovirus: Virtual Screening, and Molecular Dynamics
by
Damoyi, Nkululeko
,
Jordaan, Maryam A.
,
Shapi, Michael
in
Antiviral drugs
,
Binding sites
,
Clinical trials
2020
Noroviruses are non-enveloped viruses with a positive-sense single-stranded RNA (ssRNA) genome belonging to the genus Norovirus, from the family Caliciviridae, which are accountable for acute gastroenteritis in humans. The Norovirus genus is subdivided into seven genogroups, i.e., (GI-GVII); among these, the genogroup II and genotype 4 (GII.4) strains caused global outbreaks of human norovirus (HuNov) disease. The viral genome comprises three open reading frames (ORFs). ORF1 encodes the nonstructural polyprotein that is cleaved into six nonstructural proteins, which include 3C-like cysteine protease (3CLpro) and a viral RNA-dependent RNA polymerase. ORF2 and ORF3 encode the proteins VP1 and VP2. The RNA-dependent RNA polymerase (RdRp) from noroviruses is one of the multipurpose enzymes of RNA viruses vital for replicating and transcribing the viral genome, making the virally encoded enzyme one of the critical targets for the development of novel anti-norovirus agents. In the quest for a new antiviral agent that could combat HuNov, high throughput virtual screening (HTVS), combined with e-pharmacophore screening, was applied to screen compounds from the PubChem database. CMX521 molecule was selected as a prototype for a similarity search in the PubChem online database. Molecular dynamics simulations were employed to identify different compounds that may inhibit HuNov. The results predicted that compound CID-57930781 and CID-44396095 formed stable complexes with MNV-RdRp within 50 ns; hence, they may signify as promising human norovirus inhibitors.
Journal Article