Explore the vast range of titles available.

Southern Africa is expected to experience increased frequency and intensity of droughts through climate change, which will adversely affect mammalian herbivores. Using bio-loggers, we tested the expectation that wildebeest (Connochaetes taurinus), a grazer with high water-dependence, would be more sensitive to drought conditions than the arid-adapted gemsbok (Oryx gazella gazella). The study, conducted in the Kalahari, encompassed two hot-dry seasons with similar ambient temperatures but differing rainfall patterns during the preceding wet season. In the drier year both ungulates selected similar cooler microclimates, but wildebeest travelled larger distances than gemsbok, presumably in search of water. Body temperatures in both species reached lower daily minimums and higher daily maximums in the drier season but daily fluctuations were wider in wildebeest than in gemsbok. Lower daily minimum body temperatures displayed by wildebeest suggest that wildebeest were under greater nutritional stress than gemsbok. Moving large distances when water is scarce may have compromised the energy balance of the water dependent wildebeest, a trade-off likely to be exacerbated with future climate change.

Woody encroachment in ‘open’ biomes like grasslands and savannahs is occurring globally. Both local and global drivers, including elevated CO2, have been implicated in these increases. The relative importance of different processes is unresolved as there are few multi-site, multi-land-use evaluations of woody plant encroachment. We measured 70 years of woody cover changes over a 1020 km2 area covering four land uses (commercial ranching, conservation with elephants, conservation without elephants and communal rangelands) across a rainfall gradient in South African savannahs. Different directions of woody cover change would be expected for each different land use, unless a global factor is causing the increases. Woody cover change was measured between 1940 and 2010 using the aerial photo record. Detection of woody cover from each aerial photograph was automated using eCognitions' Object-based image analysis (OBIA). Woody cover doubled in all land uses across the rainfall gradient, except in conservation areas with elephants in low-rainfall savannahs. Woody cover in 2010 in low-rainfall savannahs frequently exceeded the maximum woody cover threshold predicted for African savannahs. The results indicate that a global factor, of which elevated CO2 is the likely candidate, may be driving encroachment. Elephants in low-rainfall savannahs prevent encroachment and localized megafaunal extinction is a probable additional cause of encroachment. This article is part of the themed issue ‘Tropical grassy biomes: linking ecology, human use and conservation’.

Quality conservation planning requires quality input data. However, the broad scale sampling strategies typically employed to obtain primary species distribution data are prone to geographic bias in the form of errors of omission. This study provides a quantitative measure of sampling bias to inform accuracy assessment of conservation plans based on the South African Frog Atlas Project. Significantly higher sampling intensity near to cities and roads is likely to result in overstated conservation priority and heightened conservation conflicts in urban areas. Particularly well sampled protected areas will also erroneously appear to contribute highly to amphibian biodiversity targets. Conversely, targeted sampling in the arid northwest and along mountain ranges is needed to ensure that these under-sampled regions are not excluded from conservation plans. The South African Frog Atlas Project offers a reasonably accurate picture of the broad scale west-to-east increase in amphibian richness and abundance, but geographic bias may limit its applicability for fine scale conservation planning. The Global Amphibian Assessment species distribution data offered a less biased alternative, but only at the cost of inflated commission error.

Influenza co-infection with bacteria is a leading cause of influenza-related deaths and severe respiratory infections, especially among high-risk groups like cancer patients undergoing treatment. However, acute respiratory infection (ARI)-like symptoms developed by upper-torso cancer (UTC) patients receiving radiotherapy are considered as side-effects of the radiation. Hence influenza and bacterial pathogens implicated in ARI are not investigated. This prospective cohort study examined 85 in-patients with upper-torso cancers undergoing radiotherapy at the National Radiotherapy, Oncology and Nuclear Medicine Centre (NRONMC) of Korle-Bu Teaching Hospital (KBTH) in Accra, Ghana. Eligible patients who consented were recruited into the study from September 2018 to April 2019. Influenza viruses A and B in addition to the following bacteria species Streptococcus pneumonia, Haemophilus influenzae, Neisseria meningitidis and Staphylococcus aureus were detected from oropharyngeal and nasopharyngeal swab specimens collected at three different time points. Presence of respiratory pathogens were investigated by influenza virus isolation in cell culture, bacterial culture, polymerase chain reaction (PCR) and next generation sequencing (NGS) assays. Of the 85 eligible participants enrolled into the study, 87% were females. Participants were 17 to 77 years old, with a median age of 49 years. Most of the participants (88%) enrolled had at least one pathogen present. The most prevalent pathogen was N. meningitidis (63.4%), followed by H. influenzae (48.8%), Influenza viruses A and B (32.9%), S. pneumoniae (32.9%) and S. aureus (12.2%). Approximately, 65% of these participants developed ARI-like symptoms. Participants with previous episodes of ARI, did not live alone, HNC and total radiation less than 50 Gy were significantly associated with ARI. All treatment forms were also significantly associated with ARI. Data generated from the study suggests that ARI-like symptoms observed among UTC patients receiving radiotherapy in Ghana, could be due to influenza and bacterial single and co-infections in addition to risk factors and not solely the side-effects of radiation as perceived. These findings will be prime importance for diagnosis, prevention, treatment and control for cancer patients who present with such episodes during treatment.

Woody biomass dynamics are an expression of ecosystem function, yet biomass estimates do not provide information on the spatial distribution of woody vegetation within the vertical vegetation subcanopy. We demonstrate the ability of airborne light detection and ranging (LiDAR) to measure aboveground biomass and subcanopy structure, as an explanatory tool to unravel vegetation dynamics in structurally heterogeneous landscapes. We sampled three communal rangelands in Bushbuckridge, South Africa, utilised by rural communities for fuelwood harvesting. Woody biomass estimates ranged between 9 Mg ha-1 on gabbro geology sites to 27 Mg ha-1 on granitic geology sites. Despite predictions of woodland depletion due to unsustainable fuelwood extraction in previous studies, biomass in all the communal rangelands increased between 2008 and 2012. Annual biomass productivity estimates (10-14% p.a.) were higher than previous estimates of 4% and likely a significant contributor to the previous underestimations of modelled biomass supply. We show that biomass increases are attributable to growth of vegetation <5 m in height, and that, in the high wood extraction rangeland, 79% of the changes in the vertical vegetation subcanopy are gains in the 1-3m height class. The higher the wood extraction pressure on the rangelands, the greater the biomass increases in the low height classes within the subcanopy, likely a strong resprouting response to intensive harvesting. Yet, fuelwood shortages are still occurring, as evidenced by the losses in the tall tree height class in the high extraction rangeland. Loss of large trees and gain in subcanopy shrubs could result in a structurally simple landscape with reduced functional capacity. This research demonstrates that intensive harvesting can, paradoxically, increase biomass and this has implications for the sustainability of ecosystem service provision. The structural implications of biomass increases in communal rangelands could be misinterpreted as woodland recovery in the absence of three-dimensional, subcanopy information.

Water crises present a global water governance challenge. To date, scholarship has tended to focus on technological and policy-based solutions, while ignoring the influence of narratives on public buy-in during such crises. Africa is expected to become hotter and drier in future, while its cities experience high levels of informal population growth and inequality. These factors combine to make African cities particularly vulnerable to times of water stress. The aim in this paper is to investigate the state of the 'art' on narratives framing domestic water use in African cities during periods of acute water stress and 'crises', using a systematic literature review of peer-reviewed academic journal articles. The findings revealed a small population of recently published papers that engage critically with state-generated narratives framing the crisis, limited to case studies on Cape Town and Windhoek. We recommend, however, a greater critical engagement with the anti-establishment narratives that can flourish during periods of acute water stress, and tend to be inflammatory and divisive in nature.

Humans have played a major role in altering savanna structure and function, and growing land-use pressure will only increase their influence on woody cover. Yet humans are often overlooked as ecological components. Both humans and the African elephant Loxodonta africana alter woody vegetation in savannas through removal of large trees and activities that may increase shrub cover. Interactive effects of both humans and elephants with fire may also alter vegetation structure and composition. Here we capitalize on a macroscale experimental opportunity – brought about by the juxtaposition of an elephant-mediated landscape, human-utilized communal harvesting lands and a nature reserve fenced off from both humans and elephants – to investigate the influence of humans and elephants on height-specific treefall dynamics. We surveyed 6812 ha using repeat, airborne high resolution Light Detection and Ranging (LiDAR) to track the fate of 453 685 tree canopies over two years. Human-mediated biennial treefall rates were 2–3.5 fold higher than the background treefall rate of 1.5% treefall ha–1, while elephant-mediated treefall rates were 5 times higher at 7.6% treefall ha–1 than the control site. Model predictors of treefall revealed that human or elephant presence was the most important variable, followed by the interaction between geology and fire frequency. Treefall patterns were spatially heterogeneous with elephant-driven treefall associated with geology and surface water, while human patterns were related to perceived ease of access to wood harvesting areas and settlement expansion. Our results show humans and elephants utilize all height classes of woody vegetation, and that large tree shortages in a heavily utilized communal land has transferred treefall occurrence to shorter vegetation. Elephant- and human-dominated landscapes are tied to interactive effects that may hinder tree seedling survival which, combined with tree loss in the landscape, may compromise woodland sustainability.

Collective properties of biodiversity, such as beta diversity, are suggested as complementary measures of species richness to guide the prioritisation and selection of important biodiversity areas in regional conservation planning. We assessed variation in the rate of plant species turnover along and between environmental gradients in KwaZulu-Natal, South Africa using generalised dissimilarity modelling, in order to map landscape levels of floristic beta diversity. Our dataset consisted of 434 plots (1000 m 2 ) containing 997 grassland and savanna matrix species. Our model explained 79 % of the null deviance observed in floristic dissimilarities. Variable rates of turnover existed along the major environmental gradients of mean annual temperature, median rainfall in February, and soil cation exchange capacity, as well as along gradients of geographical distance. Beta diversity was highest in relatively warm, drier summer regions and on dystrophic soils. Areas of high beta diversity identify areas that should be included in conservation plans to maximise representation of diversity and highlight areas best suited to protected area expansion. Biome transition areas in high beta diversity areas may be susceptible to climate variability. Including beta diversity turnover rates in regional conservation plans will help to preserve evolutionary and ecological processes that create and maintain diversity.

Mycotoxins such as aflatoxins (AFs), fumonisins (FBs), zearalenone (ZEN), and deoxynivalenol (DON) pose a risk to public health due to their carcinogenic potency (AFs and FBs) and anti-nutritional effects. The hazards associated with mycotoxins are accentuated where food management practices, control, and regulatory systems from farm to plate are sub-optimal. Information on the frequency of these mycotoxins in rice commercialized in markets in sub-Sahara Africa (SSA) is limited. The current study examined AF concentrations in 527 rice samples collected from 54 markets in five SSA countries. Grain quality characteristics, processing methods, and origin of samples were contrasted with toxin levels. In total, 72% of the samples had detectable AFs levels (range = 3.0 to 89.8 µg/kg). Forty-seven percent (47%) of the samples had AFs above 4 µg/kg, the European Union maximum level (ML), and were evaluated for cooccurrence with FBs, ZEN, and DON. Total AFs and ZEN cooccurred in 40% of the samples, and 30% of the positive ZEN samples had concentrations above the ML of 75 µg/kg. Total AFs did not co-occur with FBs and DON. Multivariate analysis revealed that length-to-width ratio ( p  < 0.0001), mixed variety for width ( p  = 0.04), and chalkiness ( p  = 0.009) significantly influenced aflatoxin concentrations. Slender grains had higher AFs concentrations than bold and medium grains ( p  < 0.0001). Possible strategies to mitigate mycotoxin contamination in rice include improving grain quality traits and practicing proper drying and hermetic storage before and after milling. These findings provide valuable insights for both domestic and international actors in establishing and strengthening regulations and management systems to mitigate rice mycotoxin contamination.

The geographic distribution of a species is governed by climatic conditions, topography, resources and habitat structure determining the fundamental niche, while the local distribution expressed via home range occupation may be compressed by biotic interactions with competitors and predators, restricting the realised niche. Biotic influences could be especially important for relatively rare species. We investigated how rainfall, geology, land type and abundance of other ungulate species serving as competitors or prey for predators contributed to the patchy distribution of sable antelope herds within Kruger National Park. Data were provided by annual aerial surveys of ungulate populations conducted between 1978 and 1988. Sable herds were more commonly present on granitic and sandstone substrates than on more fertile basalt. They occurred both in the moist south-west and dry north of the park. They were most abundant in sour bushveld and mopane savanna woodland, and mostly absent from knob thorn-marula parkland. The presence of sable was negatively associated with high concentrations of impala and wildebeest, less consistently related to the abundance of zebra, and positively associated with the occurrence of buffalo herds. Best supported models included the separate effects of the most abundant grazers along with land type. Interspecific relationships seemed more consistent with vulnerability to predation as the underlying mechanism restricting the distribution of sable herds than with competitive displacement. Sable favoured land types distinct from those where wildebeest, the most preferred prey of lions, and impala, numerically the most important resident prey species, were most abundant. Hence the risk of predation, associated with habitat conditions where abundant prey species are most concentrated, can exert an overriding influence on the distribution of rarer species in terms of their home range occupation.