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Mycobacterium tuberculosis (Mtb) relies on a specialized set of metabolic pathways to support growth in macrophages. By conducting an extensive, unbiased chemical screen to identify small molecules that inhibit Mtb metabolism within macrophages, we identified a significant number of novel compounds that limit Mtb growth in macrophages and in medium containing cholesterol as the principle carbon source. Based on this observation, we developed a chemical-rescue strategy to identify compounds that target metabolic enzymes involved in cholesterol metabolism. This approach identified two compounds that inhibit the HsaAB enzyme complex, which is required for complete degradation of the cholesterol A/B rings. The strategy also identified an inhibitor of PrpC, the 2-methylcitrate synthase, which is required for assimilation of cholesterol-derived propionyl-CoA into the TCA cycle. These chemical probes represent new classes of inhibitors with novel modes of action, and target metabolic pathways required to support growth of Mtb in its host cell. The screen also revealed a structurally-diverse set of compounds that target additional stage(s) of cholesterol utilization. Mutants resistant to this class of compounds are defective in the bacterial adenylate cyclase Rv1625/Cya. These data implicate cyclic-AMP (cAMP) in regulating cholesterol utilization in Mtb, and are consistent with published reports indicating that propionate metabolism is regulated by cAMP levels. Intriguingly, reversal of the cholesterol-dependent growth inhibition caused by this subset of compounds could be achieved by supplementing the media with acetate, but not with glucose, indicating that Mtb is subject to a unique form of metabolic constraint induced by the presence of cholesterol.

Mycobacterium tuberculosis (Mtb) relies on a specialized set of metabolic pathways to support growth in macrophages. By conducting an extensive, unbiased chemical screen to identify small molecules that inhibit Mtb metabolism within macrophages, we identified a significant number of novel compounds that limit Mtb growth in macrophages and in medium containing cholesterol as the principle carbon source. Based on this observation, we developed a chemical-rescue strategy to identify compounds that target metabolic enzymes involved in cholesterol metabolism. This approach identified two compounds that inhibit the HsaAB enzyme complex, which is required for complete degradation of the cholesterol A/B rings. The strategy also identified an inhibitor of PrpC, the 2-methylcitrate synthase, which is required for assimilation of cholesterol-derived propionyl-CoA into the TCA cycle. These chemical probes represent new classes of inhibitors with novel modes of action, and target metabolic pathways required to support growth of Mtb in its host cell. The screen also revealed a structurally-diverse set of compounds that target additional stage(s) of cholesterol utilization. Mutants resistant to this class of compounds are defective in the bacterial adenylate cyclase Rv1625/Cya. These data implicate cyclic-AMP (cAMP) in regulating cholesterol utilization in Mtb, and are consistent with published reports indicating that propionate metabolism is regulated by cAMP levels. Intriguingly, reversal of the cholesterol-dependent growth inhibition caused by this subset of compounds could be achieved by supplementing the media with acetate, but not with glucose, indicating that Mtb is subject to a unique form of metabolic constraint induced by the presence of cholesterol.

Previous studies have attempted to link foliar resorption of nitrogen and phosphorus to their respective availabilities in soil, with mixed results. Based on resource optimization theory, we hypothesized that the foliar resorption of one element could be driven by the availability of another element. We tested various measures of soil N and P as predictors of N and P resorption in six tree species in 18 plots across six stands at the Bartlett Experimental Forest, New Hampshire, USA. Phosphorus resorption efficiency ( P < 0.01) and proficiency ( P = 0.01) increased with soil N content to 30 cm depth, suggesting that trees conserve P based on the availability of soil N. Phosphorus resorption also increased with soil P content, which is difficult to explain based on single-element limitation, but follows from the correlation between soil N and soil P. The expected single-element relationships were evident only in the O horizon: P resorption was high where resin-available P was low in the Oe ( P < 0.01 for efficiency, P < 0.001 for proficiency) and N resorption was high where potential N mineralization in the Oa was low ( P < 0.01 for efficiency and 0.11 for proficiency). Since leaf litter is a principal source of N and P to the O horizon, low nutrient availability there could be a result rather than a cause of high resorption. The striking effect of soil N content on foliar P resorption is the first evidence of multiple-element control on nutrient resorption to be reported from an unmanipulated ecosystem.

Functional balance theory predicts that plants will allocate less carbon belowground when the availability of nutrients is elevated. We tested this prediction in two successional northern hardwood forest stands by quantifying fine root biomass and growth after 5–7 years of treatment in a nitrogen (N) x phosphorus (P) factorial addition experiment. We quantified root responses at two different levels of treatment: the whole-plot scale fertilization and small-patch scale fertilization of ingrowth cores. Fine root biomass was higher in plots receiving P, and fine root growth was highest in plots receiving both N and P. Thus, belowground productivity did not decrease in response to long-term addition of nutrients. We did not find conclusive evidence that elevated availability of one nutrient at the plot scale induced foraging for the other nutrient at the core scale, or that foraging for nutrients at the core scale responded to addition of limiting nutrients. Our observations suggest NP co-limitation of fine root growth and indicate complex interactions of N and P affecting aboveground and belowground production in early successional northern hardwood forest ecosystems.

Resource allocation theory posits that increased soil nutrient availability results in decreased plant investment in nutrient acquisition. We evaluated this theory by quantifying fine root biomass and growth in a long term, nitrogen (N) × phosphorus (P) fertilization study in three mature northern hardwood forest stands where aboveground growth increased primarily in response to P addition. We did not detect a decline in fine root biomass or growth in response to either N or P. Instead, fine root growth increased in response to N, by 40% for length (P = 0.04 for the main effect of N in ANOVA), and by 36% for mass, relative to controls. Fine root mass growth was lower in response to N + P addition than predicted from the main effects of N and P (P = 0.01 for the interaction of N × P). The response of root growth to N availability did not result in detectable responses in fine root biomass (P = 0.61), which is consistent with increased root turnover with N addition. We propose that the differential growth response to fertilization between above- and belowground components is a mechanism by which trees enhance P acquisition in response to increasing N availability, illustrating how both elements may co-limit northern hardwood forest production.

Forest productivity on glacially derived soils with weatherable phosphorus (P) is expected to be limited by nitrogen (N), according to theories of long-term ecosystem development. However, recent studies and model simulations based on resource optimization theory indicate that productivity can be co-limited by N and P. We conducted a full factorial N × P fertilization experiment in 13 northern hardwood forest stands of three age classes in central New Hampshire, USA, to test the hypothesis that forest productivity is co-limited by N and P. We also asked whether the response of productivity to N and P addition differs among species and whether differential species responses contribute to community-level co-limitation. Plots in each stand were fertilized with 30 kg N·ha−1·yr−1, 10 kg P·ha−1·yr−1, N + P, or neither nutrient (control) for four growing seasons. The productivity response to treatments was assessed using per-tree annual relative basal area increment (RBAI) as an index of growth. RBAI responded significantly to P (P = 0.02) but not to N (P = 0.73). However, evidence for P limitation was not uniform among stands. RBAI responded to P fertilization in mid-age (P = 0.02) and mature (P = 0.07) stands, each taken as a group, but was greatest in N-fertilized plots of two stands in these age classes, and there was no significant effect of P in the young stands. Both white birch (Betula papyrifera Marsh.) and beech (Fagus grandifolia Ehrh.) responded significantly to P; no species responded significantly to N. We did not find evidence for N and P co-limitation of tree growth. The response to N + P did not differ from that to P alone, and there was no significant N × P interaction (P = 0.68). Our P limitation results support neither the N limitation prediction of ecosystem theory nor the N and P co-limitation prediction of resource optimization theory, but could be a consequence of long-term anthropogenic N deposition in these forests. Inconsistencies in response to P suggest that successional status and variation in site conditions influence patterns of nutrient limitation and recycling across the northern hardwood forest landscape.

Plant nutrient acquisition in forests requires respiration by roots and mycorrhizae. Belowground carbon allocation and soil respiration should thus reflect plant effort allocated to nutrient uptake, for example in conditions of different nutrient availabilities controlled by site quality or stand history. Soil respiration, belowground C allocation, and fine root biomass were measured in three sites differing in nutrient availability in the northern hardwood forests of the White Mountains of New Hampshire. Annual soil respiration and belowground C allocation measured in two stands at each site were lowest at Jeffers Brook, the site with highest nutrient availability, and higher at Hubbard Brook and Bartlett Experimental Forests. Neither soil respiration nor belowground C allocation differed significantly between mid-aged (31-41 year old) and older stands (>80 year old) within the sites, despite higher fine root (< 1 mm) biomass in old stands than mid-aged stands. During the growing season, soil respiration was low where net nitrogen mineralization and net nitrification were high across an extensive sample of thirteen stands and annual belowground C allocation decreased with increasing nitrification across the six intensively studied stands. Available P was not related to soil respiration. The relationships among N availability, belowground C allocation, and soil respiration support the claim that forests allocate more C belowground in ecosystems with low availability of a limiting nutrient.

Tropical montane cloud forests (TMCF) are characterized by short trees, often twisted with multiple stems, with many stems per ground area, a large stem diameter to height ratio, and small, often thick leaves. These forests exhibit high root to shoot ratio, with a moderate leaf area index, low above-ground production, low leaf nutrient concentrations and often with luxuriant epiphytic growth. These traits of TMCF are caused by climatic conditions not geological substrate, and are particularly associated with frequent or persistent fog and low cloud. There are several reasons why fog might result in these features. Firstly, the fog and clouds reduce the amount of light received per unit area of ground and as closed-canopy forests absorb most of the light that reaches them the reduction in the total amount of light reduces growth. Secondly, the rate of photosynthesis per leaf area declines in comparison with that in the lowlands, which leads to less carbon fixation. Nitrogen supply limits growth in several of the few TMCFs where it has been investigated experimentally. High root : shoot biomass and production ratios are common in TMCF, and soils are often wet which may contribute to N limitation. Further study is needed to clarify the causes of several key features of TMCF ecosystems including high tree diameter : height ratio.

Foliar chemistry can be useful for diagnosing soil nutrient availability and plant nutrient limitation. In northern hardwood forests, foliar responses to nitrogen (N) addition have been more often studied than phosphorus (P) addition, and the interactive effects of N and P addition have rarely been described. In the White Mountains of central New Hampshire, plots in ten forest stands of three age classes across three sites were treated annually beginning in 2011 with 30 kg N ha −1 y −1 or 10 kg P ha −1 y −1 or both or neither–a full factorial design. Green leaves of American beech ( Fagus grandifolia Ehrh.), pin cherry ( Prunus pensylvanica L.f.), red maple ( Acer rubrum L.), sugar maple ( A. saccharum Marsh.), white birch ( Betula papyrifera Marsh.), and yellow birch ( B. alleghaniensis Britton) were sampled pre-treatment and 4–6 years post-treatment in two young stands (last cut between 1988–1990), four mid-aged stands (last cut between 1971–1985) and four mature stands (last cut between 1883–1910). In a factorial analysis of species, stand age class, and nutrient addition, foliar N was 12% higher with N addition ( p < 0.001) and foliar P was 45% higher with P addition ( p < 0.001). Notably, P addition reduced foliar N concentration by 3% ( p = 0.05), and N addition reduced foliar P concentration by 7% ( p = 0.002). When both nutrients were added together, foliar P was lower than predicted by the main effects of N and P additions ( p = 0.08 for N × P interaction), presumably because addition of N allowed greater use of P for growth. Foliar nutrients did not differ consistently with stand age class ( p  ≥ 0.11), but tree species differed ( p  ≤ 0.01), with the pioneer species pin cherry having the highest foliar nutrient concentrations and the greatest responses to nutrient addition. Foliar calcium (Ca) and magnesium (Mg) concentrations, on average, were 10% ( p < 0.001) and 5% lower ( p = 0.01), respectively, with N addition, but were not affected by P addition ( p = 0.35 for Ca and p = 0.93 for Mg). Additions of N and P did not affect foliar potassium (K) concentrations ( p = 0.58 for N addition and p = 0.88 for P addition). Pre-treatment foliar N:P ratios were high enough to suggest P limitation, but trees receiving N ( p = 0.01), not P ( p = 0.64), had higher radial growth rates from 2011 to 2015. The growth response of trees to N or P addition was not explained by pre-treatment foliar N, P, N:P, Ca, Mg, or K.

To examine the mechanisms of earthworm effects on forest soil C and N, we double-labeled leaf litter with 13 C and 15 N, applied it to sugar maple forest plots with and without earthworms, and traced isotopes into soil pools. The experimental design included forest plots with different earthworm community composition (dominated by Lumbricus terrestris or L. rubellus ). Soil carbon pools were 37% lower in earthworm-invaded plots largely because of the elimination of the forest floor horizons, and mineral soil C:N was lower in earthworm plots despite the mixing of high C:N organic matter into soil by earthworms. Litter disappearance over the first winter-spring was highest in the L. terrestris (T) plots, but during the warm season, rapid loss of litter was observed in both L. rubellus (R) and T plots. After two years, 22.0% ± 5.4% of 13 C released from litter was recovered in soil with no significant differences among plots. Total recovery of added 13 C (decaying litter plus soil) was much higher in no-worm (NW) plots (61-68%) than in R and T plots (20-29%) as much of the litter remained in the former whereas it had disappeared in the latter. Much higher percentage recovery of 15 N than 13 C was observed, with significantly lower values for T than R and NW plots. Higher overwinter earthworm activity in T plots contributed to lower soil N recovery. In earthworm-invaded plots isotope enrichment was highest in macroaggregates and microaggregates whereas in NW plots silt plus clay fractions were most enriched. The net effect of litter mixing and priming of recalcitrant soil organic matter (SOM), stabilization of SOM in soil aggregates, and alteration of the soil microbial community by earthworm activity results in loss of SOM and lowering of the C:N ratio. We suggest that earthworm stoichiometry plays a fundamental role in regulating C and N dynamics of forest SOM.