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result(s) for
"Fan, Heng"
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A story of birth and death: mRNA translation and clearance at the onset of maternal-to-zygotic transition in mammals
2019
In mammals, maternal-to-zygotic transition (MZT), or oocyte-to-embryo transition, begins with oocyte meiotic resumption due to the sequential translational activation and destabilization of dormant maternal transcripts stored in the ooplasm. It then continues with the elimination of maternal transcripts during oocyte maturation and fertilization and ends with the full transcriptional activation of the zygotic genome during embryonic development. A hallmark of MZT in mammals is its reliance on translation and the utilization of stored RNAs and proteins, rather than de novo transcription of genes, to sustain meiotic maturation and early development. Impaired maternal mRNA clearance at the onset of MZT prevents zygotic genome activation and causes early arrest of developing embryos. In this review, we discuss recent advances in our knowledge of the mechanisms whereby mRNA translation and degradation are controlled by cytoplasmic polyadenylation and deadenylation which set up the competence of maturing oocyte to accomplish MZT. The emphasis of this review is on the mouse as a model organism for mammals and BTG4 as a licensing factor of MZT under the translational control of the MAPK cascade. Summary Sentence This review highlights the new mechanisms that regulate maternal mRNA translation and degradation during oocyte meiotic cell cycle progression and oocyte-to-embryo transition.
Journal Article
Dynamics and clinical relevance of maternal mRNA clearance during the oocyte-to-embryo transition in humans
2020
Maternal mRNA clearance is an essential process that occurs during maternal-to-zygotic transition (MZT). However, the dynamics, functional importance, and pathological relevance of maternal mRNA decay in human preimplantation embryos have not yet been analyzed. Here we report the zygotic genome activation (ZGA)-dependent and -independent maternal mRNA clearance processes during human MZT and demonstrate that subgroups of human maternal transcripts are sequentially removed by maternal (M)- and zygotic (Z)-decay pathways before and after ZGA. Key factors regulating M-decay and Z-decay pathways in mouse have similar expression pattern during human MZT, suggesting that YAP1-TEAD4 transcription activators, TUT4/7-mediated mRNA 3ʹ-oligouridylation, and BTG4/CCR4-NOT-induced mRNA deadenylation may also be involved in the regulation of human maternal mRNA stability. Decreased expression of these factors and abnormal accumulation of maternal transcripts are observed in the development-arrested embryos of patients who seek assisted reproduction. Defects of M-decay and Z-decay are detected with high incidence in embryos that are arrested at the zygote and 8-cell stages, respectively. In addition, M-decay is not found to be affected by maternal
TUBB8
mutations, although these mutations cause meiotic cell division defects and zygotic arrest, which indicates that mRNA decay is regulated independent of meiotic spindle assembly. Considering the correlations between maternal mRNA decay defects and early developmental arrest of in vitro fertilized human embryos, M-decay and Z-decay pathway activities may contribute to the developmental potential of human preimplantation embryos.
How maternal RNA clearance is regulated in human preimplantation embryos is unclear. Here, the authors show there is a potential correlation between maternal mRNA decay defects and early developmental arrest from in vitro fertilized human embryos, suggesting that M-decay and Z-decay pathways may regulate such early development.
Journal Article
Quantum coherence and correlations in quantum system
2015
Criteria of measure quantifying quantum coherence, a unique property of quantum system, are proposed recently. In this paper, we first give an uncertainty-like expression relating the coherence and the entropy of quantum system. This finding allows us to discuss the relations between the entanglement and the coherence. Further, we discuss in detail the relations among the coherence, the discord and the deficit in the bipartite quantum system. We show that, the one-way quantum deficit is equal to the sum between quantum discord and the relative entropy of coherence of measured subsystem.
Journal Article
YAP Promotes Ovarian Cancer Cell Tumorigenesis and Is Indicative of a Poor Prognosis for Ovarian Cancer Patients
by
Li, Ming
,
Xia, Yan
,
Fan, Heng-Yu
in
Active Transport, Cell Nucleus - drug effects
,
Adaptor Proteins, Signal Transducing - metabolism
,
Animals
2014
YAP is a key component of the Hippo signaling pathway and plays a critical role in the development and progression of multiple cancer types, including ovarian cancer. However, the effects of YAP on ovarian cancer development in vivo and its downstream effectors remain uncertain. In this study we found that strong YAP expression was associated with poor ovarian cancer patient survival. Specifically, we showed for the first time that high YAP expression levels were positively correlated with TEAD4 gene expression, and their co-expression was a prognostic marker for poor ovarian cancer survival. Hyperactivation of YAP by mutating its five inhibitory phosphorylation sites (YAP-5SA) increased ovarian cancer cell proliferation, resistance to chemotherapeutic drugs, cell migration, and anchorage-independent growth. In contrast, expression of a dominant negative YAP mutant reversed these phenotypes in ovarian cancer cells both in vitro and in vivo. Our results suggested that YAP caused these effects by promoting an epithelial-to-mesenchymal transition. Thus, YAP promotes ovarian cancer cell growth and tumorigenesis both in vitro and in vivo. Further, high YAP and TEAD4 expression is a prognostic marker for ovarian cancer progression and a potential target for ovarian cancer treatment.
Journal Article
Unsupervised Generative Modeling Using Matrix Product States
2018
Generative modeling, which learns joint probability distribution from data and generates samples according to it, is an important task in machine learning and artificial intelligence. Inspired by probabilistic interpretation of quantum physics, we propose a generative model using matrix product states, which is a tensor network originally proposed for describing (particularly one-dimensional) entangled quantum states. Our model enjoys efficient learning analogous to the density matrix renormalization group method, which allows dynamically adjusting dimensions of the tensors and offers an efficient direct sampling approach for generative tasks. We apply our method to generative modeling of several standard data sets including the Bars and Stripes random binary patterns and the MNIST handwritten digits to illustrate the abilities, features, and drawbacks of our model over popular generative models such as the Hopfield model, Boltzmann machines, and generative adversarial networks. Our work sheds light on many interesting directions of future exploration in the development of quantum-inspired algorithms for unsupervised machine learning, which are promisingly possible to realize on quantum devices.
Journal Article
Extracting quantum coherence via steering
2016
As the precious resource for quantum information processing, quantum coherence can be created remotely if the involved two sites are quantum correlated. It can be expected that the amount of coherence created should depend on the quantity of the shared quantum correlation, which is also a resource. Here, we establish an operational connection between coherence induced by steering and the quantum correlation. We find that the steering-induced coherence quantified by such as relative entropy of coherence and trace-norm of coherence is bounded from above by a known quantum correlation measure defined as the one-side measurement-induced disturbance. The condition that the upper bound saturated by the induced coherence varies for different measures of coherence. The tripartite scenario is also studied and similar conclusion can be obtained. Our results provide the operational connections between local and non-local resources in quantum information processing.
Journal Article
Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development
2022
In mammals, translational control plays critical roles during oocyte-to-embryo transition (OET) when transcription ceases. However, the underlying regulatory mechanisms remain challenging to study. Here, using low-input Ribo-seq (Ribo-lite), we investigated translational landscapes during OET using 30–150 mouse oocytes or embryos per stage. Ribo-lite can also accommodate single oocytes. Combining PAIso-seq to interrogate poly(A) tail lengths, we found a global switch of translatome that closely parallels changes of poly(A) tails upon meiotic resumption. Translation activation correlates with polyadenylation and is supported by polyadenylation signal proximal cytoplasmic polyadenylation elements (papCPEs) in 3′ untranslated regions. By contrast, translation repression parallels global de-adenylation. The latter includes transcripts containing no CPEs or non-papCPEs, which encode many transcription regulators that are preferentially re-activated before zygotic genome activation. CCR4-NOT, the major de-adenylation complex, and its key adaptor protein BTG4 regulate translation downregulation often independent of RNA decay. BTG4 is not essential for global de-adenylation but is required for selective gene de-adenylation and production of very short-tailed transcripts. In sum, our data reveal intimate interplays among translation, RNA stability and poly(A) tail length regulation underlying mammalian OET.
Using an optimized Ribo-seq protocol that is applicable for low-input samples, Xie, Li and colleagues revealed the translation landscape during oocyte-to-embryo transition and in pre-implantation embryos.
Journal Article
MAPK3/1 (ERK1/2) in Ovarian Granulosa Cells Are Essential for Female Fertility
by
Shimada, Masayuki
,
Fan, Heng-Yu
,
Richards, JoAnne S
in
Animals
,
Biological and medical sciences
,
CCAAT-Enhancer-Binding Protein-beta - genetics
2009
A surge of luteinizing hormone (LH) from the pituitary gland triggers ovulation, oocyte maturation, and luteinization for successful reproduction in mammals. Because the signaling molecules RAS and ERK1/2 (extracellular signal-regulated kinases 1 and 2) are activated by an LH surge in granulosa cells of preovulatory follicles, we disrupted Erk1/2 in mouse granulosa cells and provide in vivo evidence that these kinases are necessary for LH-induced oocyte resumption of meiosis, ovulation, and luteinization. In addition, biochemical analyses and selected disruption of the Cebpb gene in granulosa cells demonstrate that C/EBPβ (CCAAT/Enhancer-binding protein-β) is a critical downstream mediator of ERK1/2 activation. Thus, ERK1/2 and C/EBPβ constitute an in vivo LH-regulated signaling pathway that controls ovulation- and luteinization-related events.
Journal Article
Measurement-induced nonlocality based on the trace norm
2015
Nonlocality is one unique property of quantum mechanics that differs from the classical world. One of its quantifications can be properly described as the maximum global effect caused by locally invariant measurements, known as measurement-induced nonlocality (MIN) (2011 Phys. Rev. Lett. 106 120401). Here, we propose quantifying the MIN by the trace norm. We show explicitly that this measure is monotonically decreasing under the action of a completely positive trace-preserving map, which is the general local quantum operation, on the unmeasured party for the bipartite state. This property avoids the undesirable characteristic appearing in the known measure of MIN defined by the Hilbert-Schmidt norm which may be increased or decreased by trivial local reversible operations on the unmeasured party. We obtain analytical formulas of the trace-norm MIN for any -dimensional pure state, two-qubit state, and certain high-dimensional states. As with other quantum correlation measures, the newly defined MIN can be directly applied to various models for physical interpretations.
Journal Article
Divergent projections of the prelimbic cortex mediate autism- and anxiety-like behaviors
2023
The comorbidity of autism spectrum disorder and anxiety is common, but the underlying circuitry is poorly understood. Here,
Tmem74
-/-
mice showed autism- and anxiety-like behaviors along with increased excitability of pyramidal neurons (PNs) in the prelimbic cortex (PL), which were reversed by
Tmem74
re-expression and chemogenetic inhibition in PNs of the PL. To determine the underlying circuitry, we performed conditional deletion of
Tmem74
in the PNs of PL of mice, and we found that alterations in the PL projections to fast-spiking interneurons (FSIs) in the dorsal striatum (dSTR) (PL
PNs
–dSTR
FSIs
) mediated the hyperexcitability of FSIs and autism-like behaviors and that alterations in the PL projections to the PNs of the basolateral amygdaloid nucleus (BLA) (PL
PNs
–BLA
PNs
) mediated the hyperexcitability of PNs and anxiety-like behaviors. However, the two populations of PNs in the PL had different spatial locations, optogenetic manipulations revealed that alterations in the activity in the PL–dSTR or PL–BLA circuits led to autism- or anxiety-like behaviors, respectively. Collectively, these findings highlight that the hyperactivity of the two populations of PNs in the PL mediates autism and anxiety comorbidity through the PL–dSTR and PL–BLA circuits, which may lead to the development of new therapeutics for the autism and anxiety comorbidity.
Journal Article