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Habitat loss is the dominant threat to biodiversity and ecosystem functioning in terrestrial environments. In this study, we used an a priori classification of bird species based on their dependence on native forest habitats (forest-specialist and habitat generalists) and specific food resources (frugivores and insectivores) to evaluate their responses to forest cover reduction in landscapes in the Brazilian Atlantic Forest. From the patch-landscapes approach, we delimited 40 forest sites, and quantified the percentage of native forest within a 2 km radius around the center of each site (from 6 - 85%). At each site, we sampled birds using the point-count method. We used a null model, a generalized linear model and a four-parameter logistic model to evaluate the relationship between richness and abundance of the bird groups and the native forest amount. A piecewise model was then used to determine the threshold value for bird groups that showed nonlinear responses. The richness and abundance of the bird community as a whole were not affected by changes in forest cover in this region. However, a decrease in forest cover had a negative effect on diversity of forest-specialist, frugivorous and insectivorous birds, and a positive effect on generalist birds. The species richness and abundance of all ecological groups were nonlinearly related to forest reduction and showed similar threshold values, i.e., there were abrupt changes in individuals and species numbers when forest amount was less than approximately 50%. Forest sites within landscapes with forest cover that was less than 50% contained a different bird species composition than more extensively forested sites and had fewer forest-specialist species and higher beta-diversity. Our study demonstrated the pervasive effect of forest reduction on bird communities in one of the most important hotspots for bird conservation and shows that many vulnerable species require extensive forest cover to persist.

This paper addresses the effects of habitat fragmentation on the phyllostomid bats of the Atlantic rain forest in Brazil, by comparing community structure (species richness and capture frequency) and the frequency of three bat species sampled along 36 transects encompassing six habitat categories: interiors and edges of large (>1000 ha) and small fragments (<100 ha), and the surrounding matrix of second-growth forests and areas of shade cocoa plantation. Species composition, richness and total captures were not directly affected by forest size per se, although the frequency of one dominant forest species (Artibeus obscurus) was significantly lower in small fragments compared with larger ones. The high connectivity among forest patches in the study area and the ability of some species to use the surrounding matrix of secondary forests and shade cocoa plantations possibly precludes the insularization effect. Qualitative habitat changes induced by fragmentation, such as edge formation and forest regrowth affected bat community structure; both modified habitats comprised a limited subset of the species assemblage found in the interiors of mature forests. The results presented here provide evidence of impoverished bat assemblages in man-modified habitats linked with deforestation and overall disturbances related with forest fragmentation.

The threatened thin-spined porcupine (Chaetomys subspinosus), a forest-specialist endemic to the Brazilian Atlantic forest, was rarely detected in the wild during the 20th century. Previous geographic distribution assessments were carried out nearly three decades ago and were based on interview data. We performed extensive field surveys (based on active search and interviews), a literature review, and species distribution modeling to predict and validate a more reliable picture of its geographic distribution and environmental suitability gradient. We identified the main predictors of species' incidence, its conservation status, and pinpointed key areas for species conservation. Our results indicated that C. subspinosus is distributed continuously in the Atlantic forest from southeastern Espirito Santo to central-eastern Sergipe state, totaling 104,326 km2 of occurrence area, although only 3,299 km2 (13.3%) is currently represented by native forests (species habitat). C. subspinosus was absent or at least so rare that it was not detected in more than half of the locations sampled by interviews (53.5%). Our results suggest that populations are sensitive to climatic conditions and habitat loss, becoming abruptly rarer when the remaining forest cover reaches less than 10% area within a region (~ 5,000 km2 scale). This result indicates that the high deforestation level of the Atlantic forest is already close to the limit of regional species resistance. Bahia state still harbors the bulk of the remaining forest with high climatic suitability, and generally under low levels of legal protection. Herein we highlight priority areas and research gaps that could guide decision makers to promote conservation strategies for this threatened species.

As tropical rainforests are cleared, forest remnants are increasingly isolated within agricultural landscapes. Understanding how forest loss impacts on species diversity can, therefore, contribute to identifying the minimum amount of habitat required for biodiversity maintenance in human-modified landscapes. Here, we evaluate how the amount of forest cover, at the landscape scale, affects patterns of species richness, abundance, key functional traits and common taxonomic families of adult trees in twenty Brazilian Atlantic rainforest landscapes. We found that as forest cover decreases, both tree community richness and abundance decline, without exhibiting a threshold. At the family-level, species richness and abundance of the Myrtaceae and Sapotaceae were also negatively impacted by the percent forest remaining at the landscape scale. For functional traits, we found a reduction in shade-tolerant, animal-dispersed and small-seeded species following a decrease in the amount of forest retained in landscapes. These results suggest that the amount of forest in a landscape is driving non-random losses in phylogenetic and functional tree diversity in Brazil's remaining Atlantic rainforests. Our study highlights potential restraints on the conservation value of Atlantic rainforest remnants in deforested landscapes in the future.

Habitat loss and land-use intensification are major threats to biodiversity in the Brazilian Atlantic Forest, particularly for bat assemblages that provide key ecosystem services. In this study, we examined how landscape composition (forest and pasture cover) and local forest structure influence the richness and abundance of phyllostomid bats across 20 forest fragments in southern Bahia. Bat sampling was conducted using mist nets, and forest structure was quantified using tree measurements and vertical foliage stratification. We applied structural equation modeling to test the direct and indirect effects of landscape and local variables. Our results show that forest cover has both direct and indirect positive effects on bat diversity, mediated by improved forest structure. In contrast, increased pasture cover negatively affected forest structure and was weakly associated with bat diversity. The most abundant species were generalist frugivores, such as Carollia perspicillata and Rhinophylla pumilio. These findings highlight the importance of maintaining forest cover and structural complexity to support bat diversity in agroforestry-dominated landscapes. Conservation strategies that integrate habitat protection with sustainable land-use practices are crucial to maintaining biodiversity and the ecological functions provided by bats in this globally threatened biome.

Human activity has diminished forests in different terrestrial ecosystems. This is well illustrated in the Brazilian Atlantic Forest, which still hosts high levels of species richness and endemism, even with only 28% of its original extent remaining. The consequences of such forest loss in remaining populations can be investigated with several approaches, including the genomic perspective, which allows a broader understanding of how human disturbance influences the genetic variability in natural populations. In this context, our study investigated the genomic responses of Euterpe edulis Martius, an endangered palm tree, in forest remnants located in landscapes presenting different forest cover amount and composed by distinct bird assemblage that disperse its seeds. We sampled 22 areas of the Brazilian Atlantic Forest in four regions using SNP markers inserted into transcribed regions of the genome of E. edulis, distinguishing neutral loci from those putatively under natural selection (outlier). We demonstrate that populations show patterns of structure and genetic variability that differ between regions, as a possible reflection of deforestation and biogeographic histories. Deforested landscapes still maintain high neutral genetic diversity due to gene flow over short distances. Overall, we not only support previous evidence with microsatellite markers, but also show that deforestation can influence the genetic variability outlier, in the scenario of selective pressures imposed by these stressful environments. Based on our findings, we suggest that, to protect genetic diversity in the long term, it is necessary to reforest and enrich deforested areas, using seeds from populations in the same management target region.

Forest loss is one of the most serious threats to biodiversity in the tropics and mainly occurs due to the conversion of native forests by the expansion of human activities. In addition, regional climate change is likely to adversely affect the remaining biota. These disturbances may have direct or indirect consequences on the demographic structure of plant species in human-modified landscapes. To test this hypothesis, and thus look for management practices aimed at enhancing the population viability, we used the palm species Euterpe edulis Mart. (Arecaceae) to assess the demographic structure of five ontogenetic stages prior (2014) and after (2017) a prolonged drought event (2015) that occurred in the northeastern Atlantic Forest of Brazil. We also investigated the influence of landscape forest cover on the ontogenetic demographic structure, given that forest remnants were embedded within landscapes ranging from 6 to 97% of forest amount. We revealed that forest cover was a key predictor explaining the abundance patterns of E. edulis , with all ontogenetic stages (except seedlings, immature, and adults) exhibiting lower abundance in forest remnants surrounded by lower amount of native forests. Conversely, the regional drought event unaffected the demographic structure of this palm species, which may suggest that populations of E. edulis were able to cope with an isolated, though severe, drought event. The impacts of forest loss on E. edulis demographic structure, particularly on juveniles, raises a concern about the future persistence of E. edulis populations, since the early stages represent the adult generation in the near future. Management measures, including species reintroduction, forest restoration, environmental education programmes and the enforcement of environmental laws must be encouraged to safeguard E. edulis populations in the Atlantic Forest.

Habitat loss is the main driver of the loss of global biodiversity. Knowledge on this subject, however, is highly concentrated on species richness and composition patterns, with little discussion on the consequences of habitat loss for ecological interactions. Therefore, a systemic approach is necessary to maximize the success of conservation efforts by providing more realistic information about the effects of anthropogenic disturbances on natural environmental processes. We investigated the implications of habitat loss for the early recruitment of Euterpe edulis Martius, a keystone palm in the Brazilian Atlantic Forest, in nine sampling sites located in landscapes with different percentages of forest cover (9%-83%). We conducted a paired experiment using E. Edulis seeds set up in experimental stations composed of a vertebrate exclosure versus an open treatment. We used ANCOVA models with treatments as factors to assess the influence of habitat loss on the number of germinated seeds, predation by vertebrates and invertebrates, infestation by fungi, and number of seedlings established. Habitat loss did not affect the probability of transition from a dispersed to a germinated seed. However, when seeds were protected from vertebrate removal, seedling recruitment showed a positive relationship with the amount of forest cover. Seed infestation by fungi was not significant, and seed predation was the main factor limiting seed recruitment. The loss of forest cover antagonistically affected the patterns of seed predation by vertebrates and invertebrates; predation by invertebrates was higher in less forested areas, and predation by vertebrates was higher in forested areas. When seeds were exposed to the action of all biotic mortality factors, the number of recruited seedlings was very low and unrelated to habitat loss. This result indicates that the opposite effects of seed predation by vertebrates and invertebrates mask a differential response of E. edulis recruitment to habitat loss.

ContextBiodiversity in tropical region has declined in the last decades, mainly due to forest conversion into agricultural areas. Consequently, species occupancy in these landscapes is strongly governed by environmental changes acting at multiple spatial scales.ObjectivesWe investigated which environmental predictors best determines the occupancy probability of 68 bird species exhibiting different ecological traits in forest patches.Methods.We conducted point-count bird surveys in 40 forest sites of the Brazilian Atlantic forest. Using six variables related to landscape composition and configuration and local vegetation structure, we predicted the occupancy probability of each species accounting for imperfect detections.ResultsLandscape composition, especially forest cover, best predicted bird occupancy probability. Specifically, most bird species showed greater occupancy probability in sites inserted in more forested landscapes, while some species presented higher occurrence in patches surrounded by low-quality matrices. Conversely, only three species showed greater occupancy in landscapes with higher number of patches and dominated by forest edges. Also, several species exhibited greater occupancy in sites harbouring either larger trees or lower number of understory plants. Of uttermost importance, our study revealed that a minimum of 54% of forest cover is required to ensure high (> 60%) occupancy probability of forest species.ConclusionsWe highlighted that maintaining only 20% of native vegetation in private property according to Brazilian environmental law is insufficient to guarantee a greater occupancy for most bird species. We recommend that policy actions should safeguard existing forest remnants, expand restoration projects, and curb human-induced disturbances to minimise degradation within forest patches.

In southern Bahia, Brazil’s traditional cacao region, cacao is mostly grown under the shade of thinned Atlantic Forest (known as cabruca ). These agroforestry systems are gradually being replaced by unshaded cacao monocultures that might be more vulnerable to changes in climate; however, the impacts of climate change have not been evaluated yet. We assessed the impact of climate change on the climatic suitability of cacao plantations in southern Bahia and evaluated to what extent the cabrucas reduce the vulnerability of cacao as compared to unshaded plantations. We measured the maximum temperature in a gradient of canopy cover during the warmest month of the year and projected ecological niche models (MaxEnt) on climate projections for 2050 simulating the microclimate of three production systems: cabrucas , intermediate shading, and unshaded plantations. We found that canopy cover drastically reduces daily maximum temperature, so that understory temperature in cabrucas can be up to 6.0 °C lower than in unshaded plantations. We show for the first time that all projected environmental changes negatively affect cacao in southern Bahia, diminishing its climatic suitability and reducing overall suitable areas across the region. More importantly, this study is the first one to show that cabrucas can reduce the negative impacts of climate change for cacao, especially where temperature extremes approach or exceed crop tolerance limits. We conclude that maximizing short-term profits by implementing unshaded monocultures will likely lead to production losses in the long term. Cabrucas have a central role in reducing the vulnerability of cacao to climate change and since these traditional agroforestry systems cannot be quickly restored, their conservation should be an important goal of agricultural policies in the region.