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BackgroundMerkel cell carcinoma (MCC) is a rare, aggressive neuroendocrine cancer with rapid progression and mortality rates of 33–46%.1 The majority of MCC is caused by Merkel Cell Polyomavirus (MCPyV) with the remainder induced by UV-mediated damage.1 2 Regardless of virus positivity or tumor mutational burden (TMB), immune checkpoint inhibitors (ICIs) are first line treatment for MCC1 with half of patients not responding or developing resistance. Few options exist for those refractory to immunotherapy.3 There is a need to identify the MCC-specific factors driving resistance and to identify alternate molecular targets.Methods205 MCC tumors were analyzed using next-generation sequencing (592, NextSeq; WES, NovaSeq) and WTS (NovaSeq) (Caris Life Sciences, Phoenix, AZ). TMB was measured by totaling somatic mutations per tumor (TMB-H: >10 mutations/MB). MCPy viral (MCPyV) status was determined for 68 WES profiled cases using a cut-off of 1000 reads after concordance testing with IHC. Immune cell infiltrates were estimated by Quantiseq. Significance was determined using Chi-square and Mann-Whitney U tests and adjusted for multiple comparisons (q-value <0.05).ResultsThe majority (89.3%) of MCPyV-negative MCC tumors were TMB-high (>10 mutations/Mb), with 96.4% having mutations in TP53 and 80.8% in RB1. Other gene mutations included NOTCH1 (37%), KMT2C (28.6%), TERT (17.9%), FAT1 (14.3%), and PIK3CA (14.3%). In contrast, MCPyV-positive tumors were frequently TMB-low (100%) and rarely harbored mutations in TP53 and RB1 (10.3% and 2.6%, respectively). Immune checkpoint gene (CD80, CD86, CD274, PD1, PD1L, and CTLA4) expression was similar between MCPyV-positive and -negative tumors. Estimated NK cell infiltration was significantly higher in MCPyV-negative tumors. MCPyV-negative MCC also had significantly higher expression of a MAPK pathway activation signature (MPAS).ConclusionsMCPyV-positive and -negative MCC represent two classes of molecularly distinct tumors and can be differentiated based on their TMB and mutational profile. The significantly increased NK cell infiltration seen in MCPyV-negative MCC represents a potential therapeutic pathway with the efficacy of NK cell-stimulating agents currently under investigation in the Quilt-3.063 trial.4 MPAS up-regulation in MCPyV-negative MCC suggests that MAPK inhibitors could be used as an alternative to ICIs, which is supported by preclinical data.3 5 MCPyV-negative and -positive MCC are distinct tumor subtypes whose molecular and immune cell profiles warrant further investigation to optimize use of current ICIs and identify therapeutic targets.ReferencesPark SY, Doolittle-Amieva C, Moshiri Y, Akaike T, Parvathaneni U, Bhatia S, Zaba LC, Nghiem P. How we treat Merkel cell carcinoma: within and beyond current guidelines. Future Oncol. 2021 Apr;17(11):1363−1377.Knepper TC, Montesion M, Russell JS, Sokol ES, Frampton GM, Miller VA, Albacker LA, McLeod HL, Eroglu Z, Khushalani NI, Sondak VK, Messina JL, Schell MJ, DeCaprio JA, Tsai KY, Brohl AS. The Genomic Landscape of Merkel Cell Carcinoma and Clinicogenomic Biomarkers of Response to Immune Checkpoint Inhibitor Therapy. Clin Cancer Res. 2019 Oct 1;25(19):5961−5971.Fang B, Kannan A, Zhao S, Nguyen QH, Ejadi S, Yamamoto M, Barreto JC, Zhao H, Gao L. Inhibition of PI3K by copanlisib exerts potent antitumor effects on Merkel cell carcinoma cell lines and mouse xenografts. Sci Rep. 2020 Jun 1;10(1):8867.ImmunityBio,Inc. QUILT-3.063: A Study of N-803, haNK and Avelumab in Patients With Merkel Cell Carcinoma That Has Progressed After Checkpoint Therapy. ClinicalTrials.gov identifier: NCT03853317. Updated June 18, 2023. Accessed June 27, 2023.Temblador A, Topalis D, Andrei G, Snoeck R. Synergistic targeting of the PI3K/mTOR and MAPK/ERK pathways in Merkel cell carcinoma. Tumour Virus Res. 2022 Dec;14:200244.Ethics ApprovalThis study was conducted in accordance with guidelines of the Declaration of Helsinki, Belmont report, and U.S. Common rule utilizing retrospective, deidentified clinical data in keeping with 45 CFR 46.101(b)(4). Therefore, this study is considered Institutional Review Board (IRB) exempt and no consent was necessary from the subjects.

BackgroundONB, SNEC and SNUC are rare sinonasal neoplasms demonstrating varying neuroendocrine characteristics, with limited systemic treatment options. ONB expresses SSTR2, diagnostically and therapeutically actionable; SNUC is heterogeneous and a diagnosis of exclusion. We examined the gene expression of SSTR2 and the immune landscape in ONB, SNUC and SNECs.MethodsONB (N = 26), SNUC (N = 25), and SNEC (N = 7) tumors (all histologies per referring clinician, not internally validated) were tested at Caris Life Sciences (Phoenix, AZ) with NextGen Sequencing of DNA (592-gene or whole exome [WES]) and RNA (whole transcriptome). Tumors were defined as HPV 16/18+ using WES and Epstein Barr Virus+ (EBV+) using WES and EBER ISH. SNUC was further stratified into EBV+/EBV- cohorts. PD-L1 expression (22C3; Positive (+): TPS ≥1%) was assessed by IHC. A combination of IHC, NGS, and fragment analysis was used to assess deficient mismatch repair status and microsatellite instability (dMMR/MSI). RNA-Seq data were analyzed for a transcriptomic signature predictive of immunotherapy response (T-cell inflamed score) and immune cell fractions were estimated using quanTIseq. Mann-Whitney U, Fisher’s Exact and χ2 tests were applied as appropriate with p-values adjusted for multiple comparisons (p < 0.05).ResultsAll ONB and SNEC were EBV-, while 60% (15/25) of SNUC were EBV+. Only 10% (1/10) of EBV- SNUCs were HPV16+ with all other tumors being HPV 16/18-. The median expression of SSTR2 was highest in ONB followed by EBV+ SNUC, EBV- SNUC and SNEC (27.9, 8.4, 3.1, 3.1 (transcripts/million [TPM])) (figure 1, asterisk indicates p < 0.05). 18.75% (3/16) of ONB, 10% (1/10) of EBV- SNUC, and 100% (13/13) of EBV+ SNUC were PD-L1+ (p < 0.05, no data for SNEC). T cell-inflamed tumors were significantly more prevalent in EBV+ SNUC (67%) compared to EBV- SNUC (49%), ONB (9%) and SNEC (0%, p < 0.001). EBV+ SNUC had significantly higher median estimates (%) of immune cell infiltrates, including B cells (15.1, 8.2, 7.1 and 8.8), CD8+ T cells (5.2, 0.2, 0.5, 0.0), M1 macrophages (6.0, 1.3, 0.4, 0.6), and Tregs (7.2, 1.0, 0.0, 0.0) compared to EBV- SNUC, ONB and SNEC (all p < 0.05)ConclusionsIn this real-world dataset, the highest expression of SSTR2 was found in ONB and EBV+ SNUC, suggesting a role for SSTR2-directed strategies. Additionally, all EBV+ SNUCs were PD-+, immunogenic, and predominantly T-cell inflamed suggesting potential for immunotherapeutic strategies. For SNUC, validation of these results in additional cohorts is important.ConsentThis study was conducted in accordance with the guidelines of the Declaration of Helsinki, Belmont Report, and US Common Rule. In keeping with 45 CFR 46.101 (b), this study was performed utilizing retrospective, deidentified clinical data. Therefore, this study was deemed Institutional Review Board exempt, and no patient consent was necessary from the subjects.Abstract 1509 Figure 1SSTR2 expression across rare sinonasal malignancies