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136 result(s) for "Ferrante, Matteo"
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Reconstructing music perception from brain activity using a prior guided diffusion model
Reconstructing music directly from brain activity provides insight into the neural representations underlying auditory processing and paves the way for future brain–computer interfaces. We introduce a fully data-driven pipeline that combines cross-subject functional alignment with bayesian decoding in the latent space of a diffusion-based audio generator. Functional alignment projects individual fMRI responses onto a shared representational manifold, increasing the performance of cross-participant accuracy with respect to anatomically normalized baselines. A bayesian search over latent trajectories then selects the most plausible waveform candidate, stabilizing reconstructions against neural noise. Crucially, we bridge CLAP’s multi-modal embeddings to music-domain latents through a dedicated aligner, eliminating the need for hand-crafted captions and preserving the intrinsic structure of musical features. Evaluated on ten diverse genres, the model achieves a cross-subject-averaged identification accuracy of , and produces audio that human listeners recognize above chance in 85.7% of trials. Voxel-wise analyses locate the predictive signal within a bilateral circuit spanning early auditory, inferior-frontal, and premotor cortices, consistent with hierarchical and sensorimotor theories of music perception. The framework establishes a principled bridge between generative audio models and cognitive neuroscience.
Enabling uncertainty estimation in neural networks through weight perturbation for improved Alzheimer's disease classification
The willingness to trust predictions formulated by automatic algorithms is key in a wide range of domains. However, a vast number of deep architectures are only able to formulate predictions without associated uncertainty. In this study, we propose a method to convert a standard neural network into a Bayesian neural network and estimate the variability of predictions by sampling different networks similar to the original one at each forward pass. We combine our method with a tunable rejection-based approach that employs only the fraction of the data, i.e., the share that the model can classify with an uncertainty below a user-set threshold. We test our model in a large cohort of brain images from patients with Alzheimer's disease and healthy controls, discriminating the former and latter classes based on morphometric images exclusively. We demonstrate how combining estimated uncertainty with a rejection-based approach increases classification accuracy from 0.86 to 0.95 while retaining 75% of the test set. In addition, the model can select the cases to be recommended for, e.g., expert human evaluation due to excessive uncertainty. Importantly, our framework circumvents additional workload during the training phase by using our network \"turned into Bayesian\" to implicitly investigate the loss landscape in the neighborhood of each test sample in order to determine the reliability of the predictions. We believe that being able to estimate the uncertainty of a prediction, along with tools that can modulate the behavior of the network to a degree of confidence that the user is informed about (and comfortable with), can represent a crucial step in the direction of user compliance and easier integration of deep learning tools into everyday tasks currently performed by human operators.
Causal contributions of left inferior and medial frontal cortex to semantic and executive control
Semantic control enables context-guided retrieval from memory, yet its distinction from domain-general executive control remains debated. We applied transcranial magnetic stimulation (TMS) to the left inferior frontal gyrus (IFG) and pre-supplementary motor area (pre-SMA) to probe their functional relevance for semantic and executive control. Across four sessions, 24 participants received repetitive TMS, followed by semantic fluency, figural fluency, and picture naming tasks. Stimulation of either region broadly disrupted both semantic and figural fluency, suggesting shared functionality. However, electric field modeling of the induced stimulation strength revealed distinct specializations: The left IFG was primarily associated with semantic control, affecting primarily verbal fluency, while the pre-SMA played a domain-general role in executive functions, affecting non-verbal fluency and cognitive flexibility. Notably, only dual-site TMS impaired accuracy in figural fluency, providing unique evidence for successful compensation of executive functions through either the left IFG or pre-SMA following single-site perturbation. These findings underscore the multidimensionality of cognitive control and suggest a flexible contribution of the IFG to control processes, either as semantic-specific or general executive resource. Furthermore, they highlight the tightly interconnected network of executive control subserved by the left IFG and pre-SMA, advancing our understanding of the neural basis of cognitive control. Perturbing medial and left inferior frontal cortices with TMS differentiates semantic from domain-general executive control, with compensatory interactions revealing a flexible, interconnected cognitive control network.
Evidence for compositionality in fMRI visual representations via Brain Algebra
Electrophysiological and neuroimaging studies have revealed how the brain encodes various visual categories and concepts. An open question is how combinations of multiple visual concepts are represented in terms of the component brain patterns: are brain responses to individual concepts composed according to algebraic rules? To explore this, we generated “conceptual perturbations\" in neural space by averaging fMRI responses to images with a shared concept (e.g., “winter\" or “summer\"). After thresholding to ensure specificity, we applied these perturbations to the neural pattern associated with a base image, forming new brain patterns that incorporate the added concept. These modified brain patterns were then decoded into images using a pretrained fMRI-to-image decoding model. Qualitative and quantitative inspection of the resulting images provides insight into how the brain might combine visual concepts. For example, adding a “winter\" perturbation to the brain pattern of a man on a skateboard yields a new pattern representing a man on a snowboard in a winter scene—even when the perturbation modifies only a small subset of voxels. Our findings reveal that compositional processes in neural representations may lead to predictable perceptual outcomes, as interpreted by our decoding model. This suggests that the brain’s combinatory encoding of concepts may follow a systematic, algebraic-like process—what we term “brain algebra.\" Although our study is model-driven, it opens avenues for future empirical work into the mechanisms of compositionality in the brain. Algebraic combinations of fMRI patterns reveal compositional neural representations of visual concepts, showing that brain activity can be perturbed in predictable ways to generate interpretable and meaningful perceptual transformations.
Generation of synthetic TSPO PET maps from structural MRI images
Neuroinflammation, a pathophysiological process involved in numerous disorders, is typically imaged using [ C]PBR28 (or TSPO) PET. However, this technique is limited by high costs and ionizing radiation, restricting its widespread clinical use. MRI, a more accessible alternative, is commonly used for structural or functional imaging, but when used using traditional approaches has limited sensitivity to specific molecular processes. This study aims to develop a deep learning model to generate TSPO PET images from structural MRI data collected in human subjects. A total of 204 scans, from participants with knee osteoarthritis (  = 15 scanned once, 15 scanned twice, 14 scanned three times), back pain (  = 40 scanned twice, 3 scanned three times), and healthy controls (  = 28, scanned once), underwent simultaneous 3 T MRI and [ C]PBR28 TSPO PET scans. A 3D U-Net model was trained on 80% of these PET-MRI pairs and validated using 5-fold cross-validation. The model's accuracy in reconstructed PET from MRI only was assessed using various intensity and noise metrics. The model achieved a low voxel-wise mean squared error (0.0033 ± 0.0010) across all folds and a median contrast-to-noise ratio of 0.0640 ± 0.2500 when comparing true to reconstructed PET images. The synthesized PET images accurately replicated the spatial patterns observed in the original PET data. Additionally, the reconstruction accuracy was maintained even after spatial normalization. This study demonstrates that deep learning can accurately synthesize TSPO PET images from conventional, T1-weighted MRI. This approach could enable low-cost, noninvasive neuroinflammation imaging, expanding the clinical applicability of this imaging method.
The age-specific comorbidity burden of mild cognitive impairment: a US claims database study
Background Identifying individuals with mild cognitive impairment (MCI) who are likely to progress to Alzheimer’s disease and related dementia disorders (ADRD) would facilitate the development of individualized prevention plans. We investigated the association between MCI and comorbidities of ADRD. We examined the predictive potential of these comorbidities for MCI risk determination using a machine learning algorithm. Methods Using a retrospective matched case-control design, 5185 MCI and 15,555 non-MCI individuals aged ≥50 years were identified from MarketScan databases. Predictive models included ADRD comorbidities, age, and sex. Results Associations between 25 ADRD comorbidities and MCI were significant but weakened with increasing age groups. The odds ratios (MCI vs non-MCI) in 50–64, 65–79, and ≥ 80 years, respectively, for depression (4.4, 3.1, 2.9) and stroke/transient ischemic attack (6.4, 3.0, 2.1). The predictive potential decreased with older age groups, with ROC-AUCs 0.75, 0.70, and 0.66 respectively. Certain comorbidities were age-specific predictors. Conclusions The comorbidity burden of MCI relative to non-MCI is age-dependent. A model based on comorbidities alone predicted an MCI diagnosis with reasonable accuracy.
Interleukin-6-producing non-secreting cervical paraganglioma presenting with fever of unknown origin and systemic inflammatory response syndrome
Pheochromocytomas and paragangliomas (PPGLs) are rare neuroendocrine tumours that usually present with symptoms related to catecholamine excess. However, a small subset may secrete cytokines such as interleukin-6 (IL-6), leading to atypical systemic manifestations and delayed recognition of a paraneoplastic inflammatory syndrome. We report the case of a middle-aged woman with a previously diagnosed non-secreting cervical paraganglioma who developed fever of unknown origin (FUO), anaemia and liver dysfunction 5 years after the initial diagnosis. Extensive investigations excluded infectious, autoimmune and haematological causes. Markedly elevated IL-6 levels suggested a paraneoplastic inflammatory syndrome. Corticosteroid therapy induced transient clinical improvement, while definitive surgical resection resulted in complete resolution of fever, normalisation of inflammatory markers and recovery of haematological and hepatic abnormalities. Histopathology confirmed IL-6 expression within tumour cells. This case highlights the importance of considering cytokine-secreting paragangliomas in patients with unexplained systemic inflammation, even in the absence of catecholamine hypersecretion.
Motor and higher‐order functions topography of the human dentate nuclei identified with tractography and clustering methods
Deep gray matter nuclei are the synaptic relays, responsible to route signals between specific brain areas. Dentate nuclei (DNs) represent the main output channel of the cerebellum and yet are often unexplored especially in humans. We developed a multimodal MRI approach to identify DNs topography on the basis of their connectivity as well as their microstructural features. Based on results, we defined DN parcellations deputed to motor and to higher‐order functions in humans in vivo. Whole‐brain probabilistic tractography was performed on 25 healthy subjects from the Human Connectome Project to infer DN parcellations based on their connectivity with either the cerebral or the cerebellar cortex, in turn. A third DN atlas was created inputting microstructural diffusion‐derived metrics in an unsupervised fuzzy c‐means classification algorithm. All analyses were performed in native space, with probability atlas maps generated in standard space. Cerebellar lobule‐specific connectivity identified one motor parcellation, accounting for about 30% of the DN volume, and two non‐motor parcellations, one cognitive and one sensory, which occupied the remaining volume. The other two approaches provided overlapping results in terms of geometrical distribution with those identified with cerebellar lobule‐specific connectivity, although with some differences in volumes. A gender effect was observed with respect to motor areas and higher‐order function representations. This is the first study that indicates that more than half of the DN volumes is involved in non‐motor functions and that connectivity‐based and microstructure‐based atlases provide complementary information. These results represent a step‐ahead for the interpretation of pathological conditions involving cerebro‐cerebellar circuits. We developed a multimodal MRI approach to identify DNs topography on the basis of their connectivity, in turn with either the cerebral or the cerebellar cortex, as well as their microstructural features, inputting them in an unsupervised fuzzy c‐means classification algorithm. The three approaches provided quite overlapping results in terms of geometrical distribution and, for the first time, indicate that more than half of the DN volumes is involved in non‐motor higher‐order functions.
Application of nnU-Net for Automatic Segmentation of Lung Lesions on CT Images and Its Implication for Radiomic Models
Radiomics investigates the predictive role of quantitative parameters calculated from radiological images. In oncology, tumour segmentation constitutes a crucial step of the radiomic workflow. Manual segmentation is time-consuming and prone to inter-observer variability. In this study, a state-of-the-art deep-learning network for automatic segmentation (nnU-Net) was applied to computed tomography images of lung tumour patients, and its impact on the performance of survival radiomic models was assessed. In total, 899 patients were included, from two proprietary and one public datasets. Different network architectures (2D, 3D) were trained and tested on different combinations of the datasets. Automatic segmentations were compared to reference manual segmentations performed by physicians using the DICE similarity coefficient. Subsequently, the accuracy of radiomic models for survival classification based on either manual or automatic segmentations were compared, considering both hand-crafted and deep-learning features. The best agreement between automatic and manual contours (DICE = 0.78 ± 0.12) was achieved averaging 2D and 3D predictions and applying customised post-processing. The accuracy of the survival classifier (ranging between 0.65 and 0.78) was not statistically different when using manual versus automatic contours, both with hand-crafted and deep features. These results support the promising role nnU-Net can play in automatic segmentation, accelerating the radiomic workflow without impairing the models’ accuracy. Further investigations on different clinical endpoints and populations are encouraged to confirm and generalise these findings.
Dynomics: A Novel and Promising Approach for Improved Breast Cancer Prognosis Prediction
Traditional imaging techniques for breast cancer (BC) diagnosis and prediction, such as X-rays and magnetic resonance imaging (MRI), demonstrate varying sensitivity and specificity due to clinical and technological factors. Consequently, positron emission tomography (PET), capable of detecting abnormal metabolic activity, has emerged as a more effective tool, providing critical quantitative and qualitative tumor-related metabolic information. This study leverages a public clinical dataset of dynamic 18F-Fluorothymidine (FLT) PET scans from BC patients, extending conventional static radiomics methods to the time domain—termed as ‘Dynomics’. Radiomic features were extracted from both static and dynamic PET images on lesion and reference tissue masks. The extracted features were used to train an XGBoost model for classifying tumor versus reference tissue and complete versus partial responders to neoadjuvant chemotherapy. The results underscored the superiority of dynamic and static radiomics over standard PET imaging, achieving accuracy of 94% in tumor tissue classification. Notably, in predicting BC prognosis, dynomics delivered the highest performance, achieving accuracy of 86%, thereby outperforming both static radiomics and standard PET data. This study illustrates the enhanced clinical utility of dynomics in yielding more precise and reliable information for BC diagnosis and prognosis, paving the way for improved treatment strategies.