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2 result(s) for "Ferrario, Iacopo"
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Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles
With enough advanced notice, dengue outbreaks can be mitigated. As a climate-sensitive disease, environmental conditions and past patterns of dengue can be used to make predictions about future outbreak risk. These predictions improve public health planning and decision-making to ultimately reduce the burden of disease. Past approaches to dengue forecasting have used seasonal climate forecasts, but the predictive ability of a system using different lead times in a year-round prediction system has been seldom explored. Moreover, the transition from theoretical to operational systems integrated with disease control activities is rare. We introduce an operational seasonal dengue forecasting system for Vietnam where Earth observations, seasonal climate forecasts, and lagged dengue cases are used to drive a superensemble of probabilistic dengue models to predict dengue risk up to 6 months ahead. Bayesian spatiotemporal models were fit to 19 years (2002-2020) of dengue data at the province level across Vietnam. A superensemble of these models then makes probabilistic predictions of dengue incidence at various future time points aligned with key Vietnamese decision and planning deadlines. We demonstrate that the superensemble generates more accurate predictions of dengue incidence than the individual models it incorporates across a suite of time horizons and transmission settings. Using historical data, the superensemble made slightly more accurate predictions (continuous rank probability score [CRPS] = 66.8, 95% CI 60.6-148.0) than a baseline model which forecasts the same incidence rate every month (CRPS = 79.4, 95% CI 78.5-80.5) at lead times of 1 to 3 months, albeit with larger uncertainty. The outbreak detection capability of the superensemble was considerably larger (69%) than that of the baseline model (54.5%). Predictions were most accurate in southern Vietnam, an area that experiences semi-regular seasonal dengue transmission. The system also demonstrated added value across multiple areas compared to previous practice of not using a forecast. We use the system to make a prospective prediction for dengue incidence in Vietnam for the period May to October 2020. Prospective predictions made with the superensemble were slightly more accurate (CRPS = 110, 95% CI 102-575) than those made with the baseline model (CRPS = 125, 95% CI 120-168) but had larger uncertainty. Finally, we propose a framework for the evaluation of probabilistic predictions. Despite the demonstrated value of our forecasting system, the approach is limited by the consistency of the dengue case data, as well as the lack of publicly available, continuous, and long-term data sets on mosquito control efforts and serotype-specific case data. This study shows that by combining detailed Earth observation data, seasonal climate forecasts, and state-of-the-art models, dengue outbreaks can be predicted across a broad range of settings, with enough lead time to meaningfully inform dengue control. While our system omits some important variables not currently available at a subnational scale, the majority of past outbreaks could be predicted up to 3 months ahead. Over the next 2 years, the system will be prospectively evaluated and, if successful, potentially extended to other areas and other climate-sensitive disease systems.
An Innovative Approach for Calibrating Hydrological Surrogate Deep Learning Models
Developing data-driven models for spatiotemporal hydrological prediction presents challenges in managing complexity, capturing fine spatial and temporal resolution, and ensuring model resilience across diverse regions. This study introduces an innovative surrogate deep learning (SDL) architecture designed to predict daily soil moisture (DSM) and daily actual evapotranspiration (DAE) by integrating climate data and geophysical insights, with a focus on mountainous areas such as the Adige catchment. The proposed framework aims to enhance the parameter-calibration quality. The process begins by mapping the statistical characteristics of DAE and DSM across the whole region using an unsupervised fusion technique. Model accuracy is assessed by comparing the similarity of Fuzzy C-Means (FCM) clusters before and after fusion, providing a metric for feature reduction. A data transformation technique using Gradient Boosting Regression (GBR) is then applied to each homogeneous subregion identified by the Random Forest classifier (RFC), based on elevation parameters (Wflow_dem). Furthermore, Kernel density estimation is used to ensure the reproducibility of the RFC-GBR process across large-scale applications. A comparative analysis is conducted across multiple SDL architectures, including LSTM, GRU, TCN, and ConvLSTM, over 50 epochs to better evaluate the beneficial effect of the transformed parameters on model performance and accuracy. Results indicate that adjusted parameter calibration improves model performance in all cases, with better alignment to Wflow ground truth during both wet and dry periods. The proposed model increases the accuracy by 20% to 42% when using simpler SDL models like LSTM and GRU, even with fewer epochs.