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"Fischer, Axel"
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Reverse dark current in organic photodetectors and the major role of traps as source of noise
by
Fischer, Axel
,
Kublitski, Jonas
,
Vandewal, Koen
in
639/301/1005/1007
,
639/766/1130/2799
,
Biocompatibility
2021
Organic photodetectors have promising applications in low-cost imaging, health monitoring and near-infrared sensing. Recent research on organic photodetectors based on donor–acceptor systems has resulted in narrow-band, flexible and biocompatible devices, of which the best reach external photovoltaic quantum efficiencies approaching 100%. However, the high noise spectral density of these devices limits their specific detectivity to around 10
13
Jones in the visible and several orders of magnitude lower in the near-infrared, severely reducing performance. Here, we show that the shot noise, proportional to the dark current, dominates the noise spectral density, demanding a comprehensive understanding of the dark current. We demonstrate that, in addition to the intrinsic saturation current generated via charge-transfer states, dark current contains a major contribution from trap-assisted generated charges and decreases systematically with decreasing concentration of traps. By modeling the dark current of several donor–acceptor systems, we reveal the interplay between traps and charge-transfer states as source of dark current and show that traps dominate the generation processes, thus being the main limiting factor of organic photodetectors detectivity.
The suppression of dark current in organic photodetectors (OPDs) is important for maximizing the performance of the devices. Here, the authors report the relationship between the high dark saturation current and the presence of mid-gap trap states in OPDs with a donor–acceptor structure.
Journal Article
Enhancing sub-bandgap external quantum efficiency by photomultiplication for narrowband organic near-infrared photodetectors
by
Fischer, Axel
,
Kublitski, Jonas
,
Vandewal, Koen
in
132/122
,
639/624/1075/401
,
639/766/119/1000
2021
Detection of electromagnetic signals for applications such as health, product quality monitoring or astronomy requires highly responsive and wavelength selective devices. Photomultiplication-type organic photodetectors have been shown to achieve high quantum efficiencies mainly in the visible range. Much less research has been focused on realizing near-infrared narrowband devices. Here, we demonstrate fully vacuum-processed narrow- and broadband photomultiplication-type organic photodetectors. Devices are based on enhanced hole injection leading to a maximum external quantum efficiency of almost 2000% at −10 V for the broadband device. The photomultiplicative effect is also observed in the charge-transfer state absorption region. By making use of an optical cavity device architecture, we enhance the charge-transfer response and demonstrate a wavelength tunable narrowband photomultiplication-type organic photodetector with external quantum efficiencies superior to those of pin-devices. The presented concept can further improve the performance of photodetectors based on the absorption of charge-transfer states, which were so far limited by the low external quantum efficiency provided by these devices.
Photomutiplication-type organic photodetectors (PM-OPDs) are attractive for various next-generation technologies due to their lower cost, higher sensitivity and technological utility. Here, the authors report vacuum-processed narrowband PM-OPDs with enhanced sub-bandgap external quantum efficiency.
Journal Article
Comparison of Microplastic Pollution in Beach Sediment and Seawater at UNESCO Can Gio Mangrove Biosphere Reserve
2021
Microplastics have become a global concern due to their persistent properties and impacts on the marine environment. This research investigates pollution sources and behaviors of microplastics at UNESCO Can Gio Mangrove Biosphere Reserve. Density flotation with sodium chloride is employed to extract microplastics from sand at Can Gio Beach, and a double‐filtration procedure is developed to recover microplastics from seawater at the beach and Dong Tranh Cape. The microplastics’ morphology and type are analyzed by micro‐Raman spectroscopy. The results show that microplastics are accumulated at concentrations from 31.99 to 92.56 MPs g−1 at various sand layers. The seawater at Can Gio Beach and Dong Tranh Cape contains 6.44 and 3.75 MPs L−1 of microplastics, respectively. White polyethylene fragments predominate, and all the microplastics comprise small secondary microplastics with a minimum size of 25 µm and a maximum size of 260 µm for fragments and a length of 640 µm for fibers. The proportions of polyethylene, polypropylene, polystyrene, and polymethylmethacrylate are similar. The differing percentages of other compositions in sand and seawater are attributed to the morphology and density of the microplastics. The results indicate the extent of microplastic pollution and suggest appropriate strategies for tourism development at the Biosphere Reserve. Microplastics in sand and seawater at Can Gio beach were determined by micro‐Raman spectroscopy. The result shows a correlation in composition of plastics in the two locations. Anthropogenic land‐based activities are the pollution source and microplastic distribution is affected by proximity to the source, tides, and the microplastics’ properties.
Journal Article
Protonation-dependent conformational dynamics of the multidrug transporter EmrE
by
Dastvan, Reza
,
Meiler, Jens
,
Mishra, Smriti
in
Antiporters - chemistry
,
Binding sites
,
Biological Sciences
2016
The small multidrug transporter from Escherichia coli, EmrE, couples the energetically uphill extrusion of hydrophobic cations out of the cell to the transport of two protons down their electrochemical gradient. Although principal mechanistic elements of proton/substrate antiport have been described, the structural record is limited to the conformation of the substrate-bound state, which has been shown to undergo isoenergetic alternating access. A central but missing link in the structure/mechanism relationship is a description of the proton-bound state, which is an obligatory intermediate in the transport cycle. Here we report a systematic spin labeling and double electron electron resonance (DEER) study that uncovers the conformational changes of EmrE subsequent to protonation of critical acidic residues in the context of a global description of ligand-induced structural rearrangements. We find that protonation of E14 leads to extensive rotation and tilt of transmembrane helices 1–3 in conjunction with repacking of loops, conformational changes that alter the coordination of the bound substrate and modulate its access to the binding site from the lipid bilayer. The transport model that emerges from our data posits a proton-bound, but occluded, resting state. Substrate binding from the inner leaflet of the bilayer releases the protons and triggers alternating access between inward- and outward-facing conformations of the substrate-loaded transporter, thus enabling antiport without dissipation of the proton gradient.
Journal Article
Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization
by
Fischer, Axel
,
Walther, Dirk
,
Greiner, Stephan
in
Developmental stages
,
Genomes
,
Mitochondrial DNA
2022
Abstract
Plant mitochondrial genomes display an enormous structural complexity, as recombining repeat-pairs lead to the generation of various sub-genomic molecules, rendering these genomes extremely challenging to assemble. We present a novel bioinformatic data-processing pipeline called SAGBAC (Semi-Automated Graph-Based Assembly Curator) that identifies recombinogenic repeat-pairs and reconstructs plant mitochondrial genomes. SAGBAC processes assembly outputs and applies our novel ISEIS (Iterative Sequence Ends Identity Search) algorithm to obtain a graph-based visualization. We applied this approach to three mitochondrial genomes of evening primrose (Oenothera), a plant genus used for cytoplasmic genetics studies. All identified repeat pairs were found to be flanked by two alternative and unique sequence-contigs defining so-called ‘double forks’, resulting in four possible contig-repeat‐contig combinations for each repeat pair. Based on the inferred structural models, the stoichiometry of the different contig-repeat-contig combinations was analyzed using Illumina mate-pair and PacBio RSII data. This uncovered a remarkable structural diversity of the three closely related mitochondrial genomes, as well as substantial phylogenetic variation of the underlying repeats. Our model allows predicting all recombination events and, thus, all possible sub-genomes. In future work, the proposed methodology may prove useful for the investigation of the sub-genome organization and dynamics in different tissues and at various developmental stages.
Journal Article
Nitrate consumption by the oxidation of sulfides during an enhanced natural attenuation project at a contaminated site in Berlin, Germany
by
Fichtner, Thomas
,
Fischer, Axel René
,
Dornack, Christina
in
Aquifers
,
Attenuation
,
Biodegradation
2021
BackgroundOrganic pollutants at contaminated sites are often eliminated naturally by biological degradation. The redox processes responsible can be enhanced by infiltrating electron acceptors such as nitrate or sulfate into the aquifer. However, the addition of oxidative agents can lead to undesired side-effects in the saturated soil zone such as the consumption of nitrate by the oxidation of sulfides contained in the aquifer. Laboratory-scale 1D column experiments in up flow mode were performed to evaluate the potential consumption of nitrate and the related kinetics by the oxidation of sulfides during an enhanced natural attenuation project at a site contaminated with monoaromatic compounds and trimethylbenzene. Water containing nitrate was infiltrated into aquifer soil material containing sulfides. To study side reactions, experiments were conducted with low levels of organic hazardous compounds.ResultsThe results indicate that sulfide was oxidized with the simultaneous formation of sulfate by nitrate-consuming processes. The degradation rate of sulfide was calculated to be 1.26 mg kg−1 per exchanged pore volume, corresponding to nitrate consumption of 8.5 mg kg−1 in the case of incomplete denitrification and 3.4 mg kg−1 in the case of complete denitrification.ConclusionThe presence of sulfides contained in the soil leads to a nitrate-consuming redox reaction following a linear function in case of sufficient availability of nitrate. This information is helpful for planning ENA projects at contaminated sites to reduce the risk of under- or overdosing the electron acceptor nitrate, which may lead to a lack of nitrate needed to enhance the biodegradation of contaminants in the aquifer or to the deterioration of groundwater quality.
Journal Article
Interrelations of managing position with person-environment fit of gender-role orientation, and burnout
2024
Background
In previous studies a moderator effect of management position could be found between Person-environment fit of masculinity, and burnout. Present study goals are to analyze previous fundings of the importance of the individual gender-role in relation to the work environment in more detail.
Methods
In this cross sectional explanative study, an online survey took place using Gender Role Orientation Scale (GTS +) by Altstötter-Gleich and DearEmployee-Survey by Wiedemann et al. The sample consists of 891 participants–516 female (58%), 373 male (42%), among those 277 executives (32%) and 594 participants without managerial responsibility (68%), age 17–70 years (
M
= 29.86;
S
= 7.67). Four groups were divided according to P-E fit in femininity and P-E fit in masculinity, this enabled a more precise distinction between the participants. The proportions of executives were determined, and compared in each group by a
χ
2
-Test Hierarchical linear regression models predicting burnout and proving moderator effects of managerial position were calculated for each group.
Results
The proportions of executives were the highest in the two groups with participants, who had a higher individual masculinity compared to their work environment. A moderator effect of managerial position between P-E fit in masculinity and burnout was found in group “Indifferent” (participants with lower feminity and masculinity compared with work environment). With a worse P-E fit in masculinity burnout values rise for individuals with no managerial position. On the other hand, among leaders burnout values decrease a worse P-E fit in masculinity.
Conclusions
People with a high individual masculinity compared to work environment tend more to be selected as managers, regardless of the individual characteristics of femininity, which may generally lead to a highly masculine and less feminine leadership and corporate culture. This culture could increase burnout risk for people with low individual masculinity and high feminity scores compared to work environment as well as for persons with low individual masculinity and feminity compared to work environment, especially if they are not in a managerial position.
Journal Article
A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores
2023
Coccolithophores are globally abundant, calcifying microalgae that have profound effects on marine biogeochemical cycles, the climate, and life in the oceans. They are characterized by a cell wall of CaCO
3
scales called coccoliths, which may contribute to their ecological success. The intricate morphologies of coccoliths are of interest for biomimetic materials synthesis. Despite the global impact of coccolithophore calcification, we know little about the molecular machinery underpinning coccolithophore biology. Working on the model
Emiliania huxleyi
, a globally distributed bloom-former, we deploy a range of proteomic strategies to identify coccolithogenesis-related proteins. These analyses are supported by a new genome, with gene models derived from long-read transcriptome sequencing, which revealed many novel proteins specific to the calcifying haptophytes. Our experiments provide insights into proteins involved in various aspects of coccolithogenesis. Our improved genome, complemented with transcriptomic and proteomic data, constitutes a new resource for investigating fundamental aspects of coccolithophore biology.
Coccolithophorid algae are globally important for marine biogeochemical cycles, but the molecular basis of their biology is poorly understood. Using proteomics and a new genome, Skeffington et al. identify candidate proteins involved in calcification in
Emiliania huxleyi
.
Journal Article
A Pulse-Biasing Small-Signal Measurement Technique Enabling 40 MHz Operation of Vertical Organic Transistors
by
Ellinger, Frank
,
Fischer, Axel
,
Kleemann, Hans
in
639/166/987
,
639/766/1130/2798
,
639/766/930/12
2018
Organic/polymer transistors can enable the fabrication of large-area flexible circuits. However, these devices are inherently temperature sensitive due to the strong temperature dependence of charge carrier mobility, suffer from low thermal conductivity of plastic substrates, and are slow due to the low mobility and long channel length (L). Here we report a new, advanced characterization circuit that within around ten microseconds simultaneously applies an accurate large-signal pulse bias and a small-signal sinusoidal excitation to the transistor and measures many high-frequency parameters. This significantly reduces the self-heating and therefore provides data at a known junction temperature more accurate for fitting model parameters to the results, enables small-signal characterization over >10 times wider bias I–V range, with ~10
5
times less bias-stress effects. Fully thermally-evaporated vertical permeable-base transistors with physical L = 200 nm fabricated using C
60
fullerene semiconductor are characterized. Intrinsic gain up to 35 dB, and record transit frequency (unity current-gain cutoff frequency, f
T
) of 40 MHz at 8.6 V are achieved. Interestingly, no saturation in f
T
− I and transconductance (g
m
− I) is observed at high currents. This paves the way for the integration of high-frequency functionalities into organic circuits, such as long-distance wireless communication and switching power converters.
Journal Article
Chloroplast competition is controlled by lipid biosynthesis in evening primroses
by
Sobanski, Johanna
,
Fischer, Axel
,
Obata, Toshihiro
in
Acetyl-CoA carboxylase
,
Acetyl-CoA Carboxylase - genetics
,
Biological Evolution
2019
In most eukaryotes, organellar genomes are transmitted preferentially by the mother, but molecular mechanisms and evolutionary forces underlying this fundamental biological principle are far from understood. It is believed that biparental inheritance promotes competition between the cytoplasmic organelles and allows the spread of so-called selfish cytoplasmic elements. Those can be, for example, fast-replicating or aggressive chloroplasts (plastids) that are incompatible with the hybrid nuclear genome and therefore maladaptive. Here we show that the ability of plastids to compete against each other is a metabolic phenotype determined by extremely rapidly evolving genes in the plastid genome of the evening primrose Oenothera. Repeats in the regulatory region of accD (the plastid-encoded subunit of the acetyl-CoA carboxylase, which catalyzes the first and rate-limiting step of lipid biosynthesis), as well as in ycf2 (a giant reading frame of still unknown function), are responsible for the differences in competitive behavior of plastid genotypes. Polymorphisms in these genes influence lipid synthesis and most likely profiles of the plastid envelope membrane. These in turn determine plastid division and/or turnover rates and hence competitiveness. This work uncovers cytoplasmic drive loci controlling the outcome of biparental chloroplast transmission. Here, they define the mode of chloroplast inheritance, as plastid competitiveness can result in uniparental inheritance (through elimination of the “weak” plastid) or biparental inheritance (when two similarly “strong” plastids are transmitted).
Journal Article