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"Fonseca, R."
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Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes
by
Tyagi, Meenu
,
da Fonseca, M. Manuela R.
,
de Carvalho, Carla C. C. R.
in
Accidental spills
,
Analysis
,
Aquatic Pollution
2011
Bioremediation, involving bioaugmentation and/or biostimulation, being an economical and eco-friendly approach, has emerged as the most advantageous soil and water clean-up technique for contaminated sites containing heavy metals and/or organic pollutants. Addition of pre-grown microbial cultures to enhance the degradation of unwanted compounds (bioaugmentation) and/or injection of nutrients and other supplementary components to the native microbial population to induce propagation at a hastened rate (biostimulation), are the most common approaches for in situ bioremediation of accidental spills and chronically contaminated sites worldwide. However, many factors like strain selection, microbial ecology, type of contaminant, environmental constraints, as well as procedures of culture introduction, may lead to their failure. These drawbacks, along with fragmented literature, have opened a gap between laboratory trials and on-field application. The present review discusses the effectiveness as well as the limitations of bioaugmentation and biostimulation processes. A summary of experimental studies both in confined systems under controlled conditions and of real case studies in the field is presented. A comparative account between the two techniques and also the current scenario worldwide for in situ biotreatment using bioaugmentation and biostimulation, are addressed.
Journal Article
Social capital and Internet use in an age-comparative perspective with a focus on later life
by
Barbosa Neves, Barbara
,
Fonseca, Jaime R. S.
,
Pasqualotti, Adriano
in
Adolescent
,
Adult
,
Adults
2018
Older adults (aged 65+) are still less likely to adopt the Internet when compared to other age groups, although their usage is increasing. To explore the societal effects of Internet usage, scholars have been using social capital as an analytical tool. Social capital pertains to the resources that are potentially available in one's social ties. As the Internet becomes a prominent source of information, communication, and participation in industrialized countries, it is critical to study how it affects social resources from an age-comparative perspective. Research has found a positive association between Internet use and social capital, though limited attention has been paid to older adults. Studies have also found a positive association between social capital and wellbeing, health, sociability, and social support amongst older adults. However, little is known about how Internet usage or lack thereof relates to their social capital. To address this gap, we used a mixed-methods approach to examine the relationship between Internet usage and social capital and whether and how it differs by age. For this, we surveyed a representative sample of 417 adults (18+) living in Lisbon, Portugal, of which 118 are older adults. Social capital was measured through bonding, bridging, and specific resources, and analyzed with Latent Class Modeling and logistic regressions. Internet usage was measured through frequency and type of use. Fourteen follow-up semi-structured interviews helped contextualize the survey data. Our findings show that social capital decreased with age but varied for each type of Internet user. Older adults were less likely to have a high level of social capital; yet within this age group, frequent Internet users had higher levels than other users and non-users. On the one hand, the Internet seems to help maintain, accrue, and even mobilize social capital. On the other hand, it also seems to reinforce social inequality and accumulated advantage (known as the Matthew effect).
Journal Article
T follicular helper cells and T follicular regulatory cells in rheumatic diseases
2019
As a hallmark of autoimmune rheumatic diseases, autoantibodies have been used in diagnosis for decades. However, the immunological mechanism underlying their generation has only become clear following the identification of T follicular helper (TFH) cells and T follicular regulatory (TFR) cells. TFH cells are instrumental in supporting antibody affinity maturation in germinal centre reactions and humoral memory formation, whereas TFR cells suppress TFH cell-mediated antibody responses. Evidence indicates that patients with autoimmune rheumatic diseases have increased numbers of TFH cells that can be hyperactive, and also potentially have altered numbers of TFR cells with reduced function, suggesting a conceivable dysregulation in the balance between TFH cells and TFR cells in these diseases. Therefore, by identifying the molecular mechanisms underlying the development and function of these cell populations, new opportunities have emerged to develop novel therapeutic targets. An increased knowledge of TFH cells and TFR cells has inspired, and hopefully will inspire more, approaches to reinstate the balance of these cells in the prevention and treatment of rheumatic diseases.
Journal Article
Bright spatially coherent synchrotron X-rays from a table-top source
2010
Betratron oscillations of electrons driven through a plasma by a high-intensity laser generate coherent X-rays. A new study demonstrates the intensity of these X-rays can be as bright as that generated by conventional third-generation synchrotrons, in a device a fraction of the size and cost.
Each successive generation of X-ray machines has opened up new frontiers in science, such as the first radiographs and the determination of the structure of DNA. State-of-the-art X-ray sources can now produce coherent high-brightness X-rays of greater than kiloelectronvolt energy and promise a new revolution in imaging complex systems on nanometre and femtosecond scales. Despite the demand, only a few dedicated synchrotron facilities exist worldwide, in part because of the size and cost of conventional (accelerator) technology
1
. Here we demonstrate the use of a new generation of laser-driven plasma accelerators
2
, which accelerate high-charge electron beams to high energy in short distances
3
,
4
,
5
, to produce directional, spatially coherent, intrinsically ultrafast beams of hard X-rays. This reduces the size of the synchrotron source from the tens of metres to the centimetre scale, simultaneously accelerating and wiggling the electron beam. The resulting X-ray source is 1,000 times brighter than previously reported plasma wigglers
6
,
7
and thus has the potential to facilitate a myriad of uses across the whole spectrum of light-source applications.
Journal Article
Risk of BA.5 Infection among Persons Exposed to Previous SARS-CoV-2 Variants
2022
Conventional wisdom is that previous infection with omicron subvariant BA.1 or BA.2 does not protect against BA.5, but data from Portugal show considerable protection against BA.5 infection from previous BA.1 or BA.2 infection.
Journal Article
Ti K-edge XANES study on the coordination number and oxidation state of Titanium in pyroxene, olivine, armalcolite, ilmenite, and silicate glass during mare basalt petrogenesis
2018
Lunar mare basalts are a product of partial melting of the lunar mantle under more reducing conditions when compared to those expected for the Earth’s upper mantle. Alongside Fe, Ti can be a major redox sensitive element in lunar magmas, and it can be enriched by up to a factor of ten in lunar basaltic glasses when compared to their terrestrial counterparts. Therefore, to better constrain the oxidation state of Ti and its coordination chemistry during lunar magmatic processes, we report new X-ray absorption near edge structure (XANES) spectroscopy measurements for a wide range of minerals (pyroxene, olivine, Fe–Ti oxides) and basaltic melt compositions involved in partial melting of the lunar mantle. Experiments were conducted in 1 bar gas-mixing furnaces at temperatures between 1100 and 1300 °C and oxygen fugacities (fO2) that ranged from air to two orders of magnitude below the Fe–FeO redox equilibrium. Run products were analysed via electron microprobe and XANES Ti K-edge. Typical run products had large (> 100 µm) crystals in equilibrium with quenched silicate glass. Ti K-edge XANES spectra show a clear shift in energy of the absorption edge features from oxidizing to reducing conditions and yield an average valence for Fe–Ti oxides (armalcolite and ilmenite) of 3.6, i.e., a 40% of the overall Ti is Ti3+ under fO2 conditions relevant to lunar magmatism (IW − 1.5 to − 1.8). Pyroxenes and olivine have average Ti valence of 3.75 (i.e., 25% of the overall Ti is trivalent), while in silicate glasses Ti is exclusively tetravalent. Pre-edge peak intensities also indicate that the coordination number of Ti varies from an average V-fold in silicate glass to VI-fold in the Fe–Ti oxides and a mixture between IV and VI-fold coordination in the pyroxenes and olivine, with up to 82% [IV]Ti4+ in the pyroxene. In addition, our results can help to better constrain the Ti3+/∑Ti of the lunar mantle phases during magmatic processes and are applied to provide first insights into the mechanisms that may control Ti mass-dependent equilibrium isotope fractionation in lunar mare basalts.
Journal Article
Regulation of the Germinal Center Response
by
Silva-Cayetano, Alyssa
,
Fonseca, Valter R.
,
Linterman, Michelle A.
in
Adjuvants
,
Antibodies
,
Antigens
2018
The germinal center (GC) is a specialized microstructure that forms in secondary lymphoid tissues, producing long-lived antibody secreting plasma cells and memory B cells, which can provide protection against reinfection. Within the GC, B cells undergo somatic mutation of the genes encoding their B cell receptors which, following successful selection, can lead to the emergence of B cell clones that bind antigen with high affinity. However, this mutation process can also be dangerous, as it can create autoreactive clones that can cause autoimmunity. Because of this, regulation of GC reactions is critical to ensure high affinity antibody production and to enforce self-tolerance by avoiding emergence of autoreactive B cell clones. A productive GC response requires the collaboration of multiple cell types. The stromal cell network orchestrates GC cell dynamics by controlling antigen delivery and cell trafficking. T follicular helper (Tfh) cells provide specialized help to GC B cells through cognate T-B cell interactions while Foxp3
T follicular regulatory (Tfr) cells are key mediators of GC regulation. However, regulation of GC responses is not a simple outcome of Tfh/Tfr balance, but also involves the contribution of other cell types to modulate the GC microenvironment and to avoid autoimmunity. Thus, the regulation of the GC is complex, and occurs at multiple levels. In this review we outline recent developments in the biology of cell subsets involved in the regulation of GC reactions, in both secondary lymphoid tissues, and Peyer's patches (PPs). We discuss the mechanisms which enable the generation of potent protective humoral immunity whilst GC-derived autoimmunity is avoided.
Journal Article
Different antibody-associated autoimmune diseases have distinct patterns of T follicular cell dysregulation
by
Água-Doce, Ana
,
Bugalho, Maria João
,
Eurico Fonseca, João
in
631/250/1619/554
,
631/250/38
,
Autoantibodies
2022
Autoantibodies are produced within germinal centers (GC), in a process regulated by interactions between B, T follicular helper (Tfh), and T follicular regulatory (Tfr) cells. The GC dysregulation in human autoimmunity has been inferred from circulating cells, albeit with conflicting results due to diverse experimental approaches. We applied a consistent approach to compare circulating Tfr and Tfh subsets in patients with different autoimmune diseases. We recruited 97 participants, including 72 patients with Hashimoto’s thyroiditis (HT, n = 18), rheumatoid arthritis (RA, n = 16), or systemic lupus erythematosus (SLE, n = 32), and 31 matched healthy donors (HD). We found that the frequency of circulating T follicular subsets differed across diseases. Patients with HT had an increased frequency of blood Tfh cells (
p
= 0.0215) and a reduced Tfr/Tfh ratio (
p
= 0.0338) when compared with HD. This was not observed in patients with systemic autoimmune rheumatic diseases (RA, SLE), who had a reduction in both Tfh (
p
= 0.0494 and
p
= 0.0392, respectively) and Tfr (
p
= 0.0003 and
p
= 0.0001, respectively) cells, resulting in an unchanged Tfr/Tfh ratio. Activated PD-1
+
ICOS
+
Tfh and CD4
+
PD-1
+
CXCR5
–
Tph cells were raised only in patients with SLE (
p
= 0.0022 and
p
= 0.0054), without association with disease activity. Our data suggest that GC dysregulation, assessed by T follicular subsets, is not uniform in human autoimmunity. Specific patterns of dysregulation may become potential biomarkers for disease and patient stratification.
Journal Article
Amplification and generation of ultra-intense twisted laser pulses via stimulated Raman scattering
by
Trines, R. M. G. M.
,
Fonseca, R. A.
,
Vieira, J.
in
639/301/1019/1020/1088
,
639/766/1960
,
639/766/483/640
2016
Twisted Laguerre–Gaussian lasers, with orbital angular momentum and characterized by doughnut-shaped intensity profiles, provide a transformative set of tools and research directions in a growing range of fields and applications, from super-resolution microcopy and ultra-fast optical communications to quantum computing and astrophysics. The impact of twisted light is widening as recent numerical calculations provided solutions to long-standing challenges in plasma-based acceleration by allowing for high-gradient positron acceleration. The production of ultra-high-intensity twisted laser pulses could then also have a broad influence on relativistic laser–matter interactions. Here we show theoretically and with
ab initio
three-dimensional particle-in-cell simulations that stimulated Raman backscattering can generate and amplify twisted lasers to petawatt intensities in plasmas. This work may open new research directions in nonlinear optics and high–energy-density science, compact plasma-based accelerators and light sources.
High intensity light with a non-zero orbital angular momentum could aid the development of laser-wakefield particle accelerators. Here, the authors theoretically show that stimulated Raman backscattering in plasmas can generate and amplify orbital angular momentum lasers to petawatt intensities.
Journal Article
Sulfide Melt Wetting Properties in Earth's Mantle: New Constraints From Combined 2D and 3D Imaging
2024
Base‐metal sulfur liquids (mattes) play a crucial role as metasomatic agents and carriers of highly siderophile elements (HSE) within the Earth's mantle. Prior research has predominantly focused on sulfur‐poor metallic liquids involved in core formation scenarios. We conducted high‐pressure experiments using a multi‐anvil apparatus to investigate the effects of pressure, non‐ferrous compounds in mattes, and the mineral composition of the silicate host on matte wetting properties. Specifically, we explored conditions representing both the lithospheric (6 and 7 GPa) and sub‐lithospheric Earth's mantle (13 GPa). We characterized the experiments using the distribution of the dihedral angle in backscattered‐electron sections and the sphericity and network topology of the mattes in tomography scans. Our findings reveal distinct behaviors: while the matte in olivine‐dominated samples exhibited behaviors consistent with previous studies, such as high dihedral angle values (94° and 100°), the majorite‐bearing sample run at 13 GPa formed a disseminated network with a mean dihedral angle of 43°, below the connectivity threshold of 60°. Furthermore, in an experiment involving a garnet‐bearing silicate host, we observed a decrease in the matte's dihedral angle to 72°. Our results suggest that pressure within mafic hosts contributes to increased matte mobility in the sub‐lithospheric Earth's mantle, especially inasmuch as the stability of garnet phases is concerned. Consequently, mattes within subducted oceanic crusts may efficiently transport HSE into surrounding lithologies, while mattes within depleted, more harzburgitic lithologies and the ambient mantle may remain trapped within the silicate host at low melt fractions. Plain Language Summary Our study focused on how sulfur‐rich liquids percolate in Earth's mantle and carry important elements. Previous research mostly studied how metallic liquids, which are sulfur‐poor, form planetary cores. We did experiments under high pressure and high temperature to see how different factors affect the mobility of sulfur‐bearing liquids in the deep Earth's mantle. We found that the type of rock and pressure levels affect how mattes spread. When rocks contained the high‐pressure polymorph of garnet, called majorite, mattes moved differently compared to rocks that mostly contain the mineral olivine. Our results show that rocks and pressure levels influence matte movement in regions of Earth's mantle that are comprised of subducted oceanic crust. This helps us understand how elements move inside the Earth, especially when oceanic crust sinks into the mantle. Key Points The mobility of mattes is enhanced by majoritic garnet at sub‐lithospheric depths The combination of 2D and 3D methods improves our understanding of liquid percolation in the Earth's mantle
Journal Article