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result(s) for
"Fournier, Alexandre"
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Spherical convective dynamos in the rapidly rotating asymptotic regime
by
Fournier, Alexandre
,
Aubert, Julien
,
Gastine, Thomas
in
Asymptotic properties
,
Datasets
,
Direct numerical simulation
2017
Self-sustained convective dynamos in planetary systems operate in an asymptotic regime of rapid rotation, where a balance is thought to hold between the Coriolis, pressure, buoyancy and Lorentz forces (the MAC balance). Classical numerical solutions have previously been obtained in a regime of moderate rotation where viscous and inertial forces are still significant. We define a uni-dimensional path in parameter space between classical models and asymptotic conditions from the requirements to enforce a MAC balance and to preserve the ratio between the magnetic diffusion and convective overturn times (the magnetic Reynolds number). Direct numerical simulations performed along this path show that the spatial structure of the solution at scales larger than the magnetic dissipation length is largely invariant. This enables the definition of large-eddy simulations resting on the assumption that small-scale details of the hydrodynamic turbulence are irrelevant to the determination of the large-scale asymptotic state. These simulations are shown to be in good agreement with direct simulations in the range where both are feasible, and can be computed for control parameter values far beyond the current state of the art, such as an Ekman number
$E=10^{-8}$
. We obtain strong-field convective dynamos approaching the MAC balance and a Taylor state to an unprecedented degree of accuracy. The physical connection between classical models and asymptotic conditions is shown to be devoid of abrupt transitions, demonstrating the asymptotic relevance of classical numerical dynamo mechanisms. The fields of the system are confirmed to follow diffusivity-free, power-based scaling laws along the path.
Journal Article
Motional Induction in Ganymede's Ocean
by
Fournier, Alexandre
,
Cabanes, Simon
,
Gastine, Thomas
in
Cellular convection
,
Convection
,
Flow velocity
2026
We investigate the magnetic signature of oceanic circulation in Ganymede's subsurface ocean using kinematic induction modeling. Our approach couples zonal jet flows from rotating thermal convection simulations with magnetic field models incorporating Ganymede's internal dynamo and external contributions from Jupiter. We solve the induction equation in spherical geometry for deep‐ocean (493 km) and shallow‐ocean (287 km) scenarios with varying magnetic Reynolds numbers. Ocean flows generate a predominantly toroidal magnetic field through the omega‐effect, with a weaker poloidal component pervading beyond the conductive ocean layer. For some, but not all, induction configurations, analysis of the time‐averaged Lowes‐Mauersberger spectra reveals that ocean‐induced signals dominate at spherical harmonic degrees ℓ≥4 $\\ell \\ge 4$. Deep ocean scenarios with magnetic Reynolds numbers above unity produce surface magnetic signals up to 9 nT. Our results demonstrate that Ganymede's intrinsic magnetic field creates favorable conditions for detecting subsurface ocean dynamics, thus emphasizing the need for low‐altitude orbits for the Juice probe.
Journal Article
ARID1A regulates R-loop associated DNA replication stress
by
Fournier, Louis-Alexandre
,
Tsai, Shuhe
,
Wang, Alan Ying-Hsu
in
Analysis
,
Anemia
,
Biology and life sciences
2021
ARID1A is a core DNA-binding subunit of the BAF chromatin remodeling complex, and is lost in up to 7% of all cancers. The frequency of ARID1A loss increases in certain cancer types, such as clear cell ovarian carcinoma where ARID1A protein is lost in about 50% of cases. While the impact of ARID1A loss on the function of the BAF chromatin remodeling complexes is likely to drive oncogenic gene expression programs in specific contexts, ARID1A also binds genome stability regulators such as ATR and TOP2. Here we show that ARID1A loss leads to DNA replication stress associated with R-loops and transcription-replication conflicts in human cells. These effects correlate with altered transcription and replication dynamics in ARID1A knockout cells and to reduced TOP2A binding at R-loop sites. Together this work extends mechanisms of replication stress in ARID1A deficient cells with implications for targeting ARID1A deficient cancers.
Journal Article
Bottom-up control of geomagnetic secular variation by the Earth’s inner core
by
Finlay, Christopher C.
,
Fournier, Alexandre
,
Aubert, Julien
in
704/2151/123
,
704/2151/210
,
704/2151/214
2013
The pattern of geomagnetic secular variation observed on the Earth’s surface is shown to be reproduced by two mechanisms relying on the inner core; this bottom-up heterogeneous driving of outer-core convection dominates top-down driving from mantle thermal heterogeneities.
The lowdown on geomagnetic variation on Earth's surface
Julien Aubert
et al
. show that the pattern of geomagnetic secular variation observed on the Earth's surface can be reproduced by two mechanisms relying on the inner core — gravitational coupling aligning the inner core with the mantle and differential inner-core growth, which is fastest below Indonesia. They conclude that this bottom-up heterogeneous driving of outer-core convection dominates top-down driving from mantle thermal heterogeneities, and localizes magnetic variations in a longitudinal sector centred beneath the Atlantic.
Temporal changes in the Earth’s magnetic field, known as geomagnetic secular variation, occur most prominently at low latitudes in the Atlantic hemisphere
1
,
2
(that is, from −90 degrees east to 90 degrees east), whereas in the Pacific hemisphere there is comparatively little activity. This is a consequence of the geographical localization of intense, westward drifting, equatorial magnetic flux patches at the core surface
3
. Despite successes in explaining the morphology of the geomagnetic field
4
, numerical models of the geodynamo have so far failed to account systematically for this striking pattern of geomagnetic secular variation. Here we show that it can be reproduced provided that two mechanisms relying on the inner core are jointly considered. First, gravitational coupling
5
aligns the inner core with the mantle, forcing the flow of liquid metal in the outer core into a giant, westward drifting, sheet-like gyre
6
. The resulting shear concentrates azimuthal magnetic flux at low latitudes close to the core–mantle boundary, where it is expelled by core convection and subsequently transported westward. Second, differential inner-core growth
7
,
8
, fastest below Indonesia
6
,
9
, causes an asymmetric buoyancy release in the outer core which in turn distorts the gyre, forcing it to become eccentric, in agreement with recent core flow inversions
6
,
10
,
11
. This bottom-up heterogeneous driving of core convection dominates top-down driving from mantle thermal heterogeneities, and localizes magnetic variations in a longitudinal sector centred beneath the Atlantic, where the eccentric gyre reaches the core surface. To match the observed pattern of geomagnetic secular variation, the solid material forming the inner core must now be in a state of differential growth rather than one of growth and melting induced by convective translation
7
,
8
.
Journal Article
Adaptive significance of flowering time variation across natural seasonal environments in Arabidopsis thaliana
by
Wilczek, Amity M.
,
Cooper, Martha D.
,
Stitzer, Michelle C.
in
Adaptation
,
Adaptiveness
,
Alleles
2022
• The relevance of flowering time variation and plasticity to climate adaptation requires a comprehensive empirical assessment. We investigated natural selection and the genetic architecture of flowering time in Arabidopsis through field experiments in Europe across multiple sites and seasons.
• We estimated selection for flowering time, plasticity and canalization. Loci associated with flowering time, plasticity and canalization by genome-wide association studies were tested for a geographic signature of climate adaptation.
• Selection favored early flowering and increased canalization, except at the northernmost site, but was rarely detected for plasticity. Genome-wide association studies revealed significant associations with flowering traits and supported a substantial polygenic inheritance. Alleles associated with late flowering, including functional FRIGIDA variants, were more common in regions experiencing high annual temperature variation. Flowering time plasticity to fall vs spring and summer environments was associated with GIGANTEA SUPPRESSOR 5, which promotes early flowering under decreasing day length and temperature.
• The finding that late flowering genotypes and alleles are associated with climate is evidence for past adaptation. Real-time phenotypic selection analysis, however, reveals pervasive contemporary selection for rapid flowering in agricultural settings across most of the species range. The response to this selection may involve genetic shifts in environmental cuing compared to the ancestral state.
Journal Article
MRE11-RAD50-NBS1 promotes Fanconi Anemia R-loop suppression at transcription–replication conflicts
2019
Ectopic R-loop accumulation causes DNA replication stress and genome instability. To avoid these outcomes, cells possess a range of anti-R-loop mechanisms, including RNaseH that degrades the RNA moiety in R-loops. To comprehensively identify anti-R-loop mechanisms, we performed a genome-wide trigenic interaction screen in yeast lacking
RNH1
and
RNH201
. We identified >100 genes critical for fitness in the absence of RNaseH, which were enriched for DNA replication fork maintenance factors including the MRE11-RAD50-NBS1 (MRN) complex. While MRN has been shown to promote R-loops at DNA double-strand breaks, we show that it suppresses R-loops and associated DNA damage at transcription–replication conflicts. This occurs through a non-nucleolytic function of MRE11 that is important for R-loop suppression by the Fanconi Anemia pathway. This work establishes a novel role for MRE11-RAD50-NBS1 in directing tolerance mechanisms at transcription–replication conflicts.
Accumulations of R-loops can lead to genome instability. Here the authors reveal a role for the MRN complex in suppressing R-loops and associated DNA damage at transcription–replication conflicts.
Journal Article
The geomagnetic secular-variation timescale in observations and numerical dynamo models
by
Lhuillier, Florian
,
Fournier, Alexandre
,
Hulot, Gauthier
in
correlation times
,
Data assimilation
,
dynamos: theories and simulations
2011
The knowledge of the spatial power spectra of the main geomagnetic field and of its secular variation makes it possible to define typical timescales τn for each spherical harmonic degree n. Investigating both observations and numerical dynamos, we show that a one‐parameter law of the form τn = τSV/n is satisfied for the non‐dipole field, given the statistical way the observed τn are expected to fluctuate. Consequently, we determine the corresponding secular‐variation timescale τSV from either instantaneous or time‐averaged spectra, leading to a value of 415 ±4555 yr for recent satellite field models. In the broader context of geomagnetic data assimilation, τSV could provide a sensible and convenient means to rescale the time axis of dynamo simulations. Key Points The geomagnetic correlation times follow a universal behaviour This behaviour can be described by a simple one‐parameter law This parameter value allows for a consistent time‐rescaling of numerical models
Journal Article
International Geomagnetic Reference Field: the 12th generation
by
Maus, Stefan
,
Lesur, Vincent
,
Léger, Jean-Michel
in
Earth and Environmental Science
,
Earth Sciences
,
Geology
2015
The 12th generation of the International Geomagnetic Reference Field (IGRF) was adopted in December 2014 by the Working Group V-MOD appointed by the International Association of Geomagnetism and Aeronomy (IAGA). It updates the previous IGRF generation with a definitive main field model for epoch 2010.0, a main field model for epoch 2015.0, and a linear annual predictive secular variation model for 2015.0-2020.0. Here, we present the equations defining the IGRF model, provide the spherical harmonic coefficients, and provide maps of the magnetic declination, inclination, and total intensity for epoch 2015.0 and their predicted rates of change for 2015.0-2020.0. We also update the magnetic pole positions and discuss briefly the latest changes and possible future trends of the Earth’s magnetic field.
Journal Article
Assessing the invasive potential of different source populations of ragweed (Ambrosia artemisiifolia L.) through genomically informed species distribution modelling
by
Putra, Andhika R.
,
Hodgins, Kathryn A.
,
Fournier‐Level, Alexandre
in
Adaptation
,
Ambrosia artemisiifolia
,
Biodiversity
2024
The genetic composition of founding populations is likely to play a key role in determining invasion success. Individual genotypes may differ in habitat preference and environmental tolerance, so their ability to colonize novel environments can be highly variable. Despite the importance of genetic variation on invasion success, its influence on the potential distribution of invaders is rarely investigated. Here, we integrate population genomics and ecological niche models (ENMs) into a single framework to predict the distribution of globally invasive common ragweed (Ambrosia artemisiifolia) in Australia. We identified three genetic clusters for ragweed and used these to construct cluster‐specific ENMs and characterize within‐species niche differentiation. The potential range of ragweed in Australia depended on the genetic composition and continent of origin of the introduced population. Invaders originating from warmer, wetter climates had a broader potential distribution than those from cooler, drier ones. By quantifying this change, we identified source populations most likely to expand the ragweed distribution. As prevention remains the most effective method of invasive species management, our work provides a valuable way of ranking the threat posed by different populations to better inform management decisions.
Journal Article
Integrative analysis and prediction of human R-loop binding proteins
2022
In the past decade, there has been a growing appreciation for R-loop structures as important regulators of the epigenome, telomere maintenance, DNA repair, and replication. Given these numerous functions, dozens, or potentially hundreds, of proteins could serve as direct or indirect regulators of R-loop writing, reading, and erasing. In order to understand common properties shared amongst potential R-loop binding proteins, we mined published proteomic studies and distilled 10 features that were enriched in R-loop binding proteins compared with the rest of the proteome. Applying an easy-ensemble machine learning approach, we used these R-loop binding protein-specific features along with their amino acid composition to create random forest classifiers that predict the likelihood of a protein to bind to R-loops. Known R-loop regulating pathways such as splicing, DNA damage repair and chromatin remodeling are highly enriched in our datasets, and we validate 2 new R-loop binding proteins LIG1 and FXR1 in human cells. Together these datasets provide a reference to pursue analyses of novel R-loop regulatory proteins.
Journal Article