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We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.

Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. We used data for >34 000 trees from several permanent plots in French Guiana to investigate if soil characteristics could predict the structure (tree diameter, density and aboveground biomass), and dynamics (growth, mortality, aboveground wood productivity) of nutrient-poor tropical forests. Most variables did not covary with site-level changes in soil nutrient content, indicating that nutrient-cycling mechanisms other than the direct absorption from soil (e.g. the nutrient uptake from litter, the resorption, or the storage of nutrients in the biomass), may strongly control forest structure and dynamics. Ecosystem-level adaptations to low soil nutrient availability and long-term low levels of disturbance may help to account for the lower productivity and higher accumulation of biomass in nutrient-poor forests compared to nutrient-richer forests.

Despite the important functional role of deep roots in withdrawing water during drought, direct measurements of root distribution are very rare in tropical rain forests. The aim of this study was to investigate the root distribution of Entandrophragma cylindricum, a common tree species in the Central African semi-deciduous rain forest, in Ferralsols and Arenosols. We dug two pits to a depth of 6 m in Ferralsols and two pits to a depth of 3 m in Arenosols, close to E. cylindricum trees. The vertical soil profiles were divided into 10 × 10-cm grid cells and the roots counted were distributed in three diameter classes. We fitted a root distribution model to our dataset. We found that vertical root distribution was shallower in Arenosols than in Ferralsols. Root penetration was not stopped even by a Ferralsol with high gravel content in its subsoil. Overall, our measurements showed that 95% of all roots were distributed to depths of between 258 and 564 cm from the soil surface, which is much deeper than the 95 cm depth previously reported in the literature for tropical rain forests. As sampling depth could explain this discrepancy, we recommend a sampling depth of at least 3–5 m to accurately estimate root distribution. The drier the dry season, the deeper the sampling depth should be. Our results are consistent with global models of root distribution in forest ecosystems, which are driven by climate variables. We thus suggest that deep rooting could be common in rain forests with a marked dry season.

Aim: To describe patterns of tree cover in savannas over a climatic gradient and a range of spatial scales and test if there are identifiable climate-related mean structures, if tree cover always increases with water availability and if there is a continuous trend or a stepwise trend in tree cover. Location: Central Tropical Africa. Methods: We compared a new analysis of satellite tree cover data with botanical, phytogeographical and environmental data. Results: Along the climatic transect, six vegetation structures were distinguished according to their average tree cover, which can co-occur as mosaics. The resulting abrupt shifts in tree cover were not correlated to any shifts in either environmental variables or in tree species distributions. Main conclusions: A strong contrast appears between fine-scale variability in tree cover and coarse-scale structural states that are stable over several degrees of latitude. While climate parameters and species pools display a continuous evolution along the climatic gradient, these stable structural states have discontinuous transitions, resulting in regions containing mosaics of alternative stable states. Soils appear to have little effect inside the climatic stable state domains but a strong action on the location of the transitions. This indicates that savannas are patch dynamics systems, prone to feedbacks stabilizing their coarse-scale structure over wide ranges of environmental conditions.

Recent studies suggest that carbon (C) is stored in the topsoil of pastures established after deforestation. However, little is known about the long-term capacity of tropical pastures to sequester C in different soil layers after deforestation. Deep soil layers are generally not taken into consideration or are underestimated when C storage is calculated. Here we show that in French Guiana, the C stored in the deep soil layers contributes significantly to C stocks down to a depth of 100 cm and that C is sequestered in recalcitrant soil organic matter in the soil below a depth of 20 cm. The contribution of the 50–100 cm soil layer increased from 22 to 31 % with the age of the pasture. We show that long-term C sequestration in C4 tropical pastures is linked to the development of C3 species (legumes and shrubs), which increase both inputs of N into the ecosystem and the C:N ratio of soil organic matter. The deep soil under old pastures contained more C3 carbon than the native forest. If C sequestration in the deep soil is taken into account, our results suggest that the soil C stock in pastures in Amazonia would be higher with sustainable pasture management, in particular by promoting the development of legumes already in place and by introducing new species.

Identifying the drivers of soil organic carbon (SOC) stock changes is of the utmost importance to contribute to global challenges like climate change, land degradation, biodiversity loss, or food security. Evaluating the impacts of land use and management practices in agriculture and forestry on SOC is still challenging. Merging datasets or making databases interoperable is a promising way, but still has several semantic challenges. So far, a comprehensive thesaurus and classification of management practices in agriculture and forestry has been lacking, especially while focusing on SOC storage. Therefore, the aim of this paper is to present a first comprehensive thesaurus for management practices driving SOC storage (DATA4C+). The DATA4C+ thesaurus contains 224 classified and defined terms related to land management practices in agriculture and forestry. It is organized as a hierarchical tree reflecting the drivers of SOC storage. It is oriented to be used by scientists in agronomy, forestry, and soil sciences with the aim of uniformizing the description of practices influencing SOC in their original research. It is accessible in Agroportal (http://agroportal.lirmm.fr/ontologies/DATA4CPLUS, last access: 24 March 2022) to enhance its findability, accessibility, interoperability, and reuse by scientists and others such as laboratories or land managers. Future uses of the DATA4C+ thesaurus will be crucial to improve and enrich it, but also to raise the quality of meta-analyses on SOC, and ultimately help policymakers to identify efficient agricultural and forest management practices to enhance SOC storage.

Accurate diagnosis of pyelonephritis using clinical and laboratory parameters is often difficult, especially in children. The main aims of this prospective study were to compare the value of different imaging techniques [renal sonography, cortical scintigraphy with technetium-99m dimercaptosuccinic acid (99mTc DMSA) and computed tomography (CT)] in detecting renal involvement in acute urinary tract infections and to determine the sensitivity of DMSA scans for permanent renal scars 6 months later. Between February 1992 and January 1993, 55 children admitted to our pediatric unit with febrile symptomatic urinary tract infections were eligible for analysis. Ultrasonography (US), DMSA scanning and micturating cystourethrography were performed in every case. Only 18 children underwent CT. A second DMSA scan was performed in 48 children a mean of 7.5 months after the first. US abnormalities were found in 25 children (45 %). The first DMSA scan showed a parenchymal aspect suggestive of pyelonephritis in 51 patients (93 %). Among the 18 patients studied by CT, 14 had abnormalities. Normal US findings did not rule out renal parenchymal involvement. Scintigraphy appeared to be more sensitive than CT for renal involvement. The frequency and degree of initial renal parenchymal damage seemed to correlate with vesicoureteral reflux, but the most severe initial parenchymal defects were not associated with marked clinical or laboratory manifestations. Repeat DMSA scans, performed on 45 kidneys with abnormalities at the first examination, showed resolution in 19, improvement in 16, persistence in 8 and deterioration in 2. The prevalence of vesicoureteral reflux was not higher in patients with renal scarring on the second DMSA scan than in patients whose scans showed an improvement. DMSA scans should be considered as a reference in the detection and follow-up of renal scarring associated with acute urinary tract infection as this technique is more sensitive than US and CT, the latter being unsuitable because it entails radiation exposure and sedation of patients.

Within tree communities, the differential use of soil N mineral resources, a key factor in ecosystem functioning, may reflect functional complementarity, a major mechanism that could explain species coexistence in tropical rainforests. Eperua falcata and Dicorynia guianensis, two abundant species cooccurring in rainforests of French Guiana, were chosen as representative of two functional groups with complementary N uptake strategies (contrasting leaf δ 15N signatures related to the δ 15N of their soil N source, NO 3 - or NH 4 + ). The objectives were to investigate if these strategies occurred under contrasted soil N resources in sites with distinct geological substrates representative of the coastal rainforests. Results showed that species displayed contrasting leaf δ 15N signatures on both substrates, confirming their complementary N uptake strategy. Consequently, their leaf 15N can be used to trace the presence of inorganic N-forms in soils ( NH 4 + and NO 3 - ) and thus to indicate the capacity of soils to provide each of these two N sources to the plant community.

We present the case of a breast-fed 5-month-old infant who presented with pancytopenia, secondary to intense myelofibrosis during the winter months because of undiagnosed rickets. The patient responded to oral vitamin D with rapid resolution of symptoms. Secondary hyperparathyroidism was the probable cause of the myelofibrosis. Although nutritional rickets remains a problem in developing countries, children in northern climates in industrialized countries may also be at risk. Rickets must be considered when assessing myelofibrosis in a very young child.