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Mollusca is the second most species-rich phylum within the metazoans, displaying critical economic, ecological and scientific importance. Yet, they are still largely underrepresented with respect to genomic resources. The emergence of next-generation sequencing technologies has revolutionized deep-scale genomic characterization of non-model organisms, and molluscs are slowly entering this transformative era. Here, we provide a historical contextualization of the Genome Revolution in molluscs with a tour de force revision of key research trends observed over the past decade. Omic approaches such as RAD-seq, transcriptome, mitogenome and whole-genome sequencing represent the most significant resources produced for this phylum. Importantly, the molecular mechanisms underscoring multiple biological novelties and adaptations observed in molluscs are starting to be unravelled. In contrast, compared to other metazoan lineages the genomic resources currently available for this lineage still lag far behind. We put forward that to fully grasp the evolutionary and adaptive roads of this tantalizing group of organisms crucially depends on the full embracement of high-throughput sequencing (HTS) technologies in the near future.

Freshwater ecosystems are the most vulnerable worldwide and freshwater bivalves rank amongst the most threatened animals in the world. Surveying and monitoring freshwater bivalves are difficult tasks: they are difficult to find, hard to identify (taxonomic expertise is needed), and working underwater is technically challenging. It is therefore crucial to find more efficient methods to survey and monitor these species. Here, we present the first metabarcoding approach for freshwater bivalves and compare environmental DNA (eDNA) and traditional surveys. We describe two sets of primers (for Unionida and Venerida) developed for freshwater bivalves eDNA metabarcoding. These primers have been tested in the field, with about 300 studied sites. Results were compared to freshwater bivalves’ surveys using traditional methods, with eDNA always detecting more species than traditional surveys, especially when Sphaerids were taken into account. While our study initially focused on Western Palearctic freshwater bivalve species, our primers were confronted in silico with available sequences and have proven to be effective at a global scale. The results show that eDNA metabarcoding, with our developed primers, is a remarkable tool allowing for non-invasive surveys, detection of rare and inconspicuous species, absence data and overall freshwater bivalves routine monitoring.

Recent research efforts have significantly advanced our knowledge on Asian freshwater mussel (Bivalvia: Unionidae) diversity and distribution. Here we provide a modern consensus of the diversity, biogeography and conservation of Unionida in the region comprising East and Southeast Asia (excluding Wallacea) and Asian Russia. A data review confirmed the presence of 228 native and 3 non-native Unionida (98% Unionidae, 2% Margaritiferidae), rendering the region a global hotspot of freshwater mussel diversity. Species richness was highest in China (particularly Yangtze basin) in absolute numbers and Cambodia when correcting for country area, and decreased gradually towards the south and steeply towards the north and east. Six of the seven unionid subfamilies are native to the region, with species richness peaking in Southeast Asia for Rectidentinae, Gonideinae, Parreysiinae and Modellnaiinae, China for Anodontinae and Unioninae, and Asian Russia for Margaritiferidae. Conservation status and data collected after 1980 were not available for 61 and 24% of species, respectively. Dams, deforestation and pollution are likely the major threats to mussels in the region, though data in this respect are scarce. The Philippines, Laos, Indonesia, Myanmar and Malaysia are among the countries with the poorest data availability and urgently require research.

Marine biofouling remains an unsolved problem with a serious economic impact on several marine associated industries and constitutes a major vector for the spread of non-indigenous species (NIS). The implementation of biofouling monitoring programs allows for better fouling management and also for the early identification of NIS. However, few monitoring studies have used recent methods, such as metabarcoding, that can significantly enhance the detection of those species. Here, we employed monthly monitoring of biofouling growth on stainless steel plates in the Atlantic Port of Leixões (Northern Portugal), over one year to test the effect of commercial anti-corrosion paint in the communities. Fouling organisms were identified by combining morpho-taxonomy identification with community DNA metabarcoding using multiple markers (16S rRNA, 18S rRNA, 23S rRNA, and COI genes). The dominant colonizers found at this location were hard foulers, namely barnacles and mussels, while other groups of organisms such as cnidarians, bryozoans, and ascidians were also abundant. Regarding the temporal dynamics of the fouling communities, there was a progressive increase in the colonization of cyanobacteria, green algae, and red algae during the sampled period with the replacement of less abundant groups. The tested anticorrosion paint demonstrated to have a significant prevention effect against the biofouling community resulting in a biomass reduction. Our study also reports, for the first time, 29 NIS in this port, substantiating the need for the implementation of recurring biofouling monitoring programs in ports and harbours.

South-western Australia is isolated from other forested regions of Australia by desert and bounded on southern and western sides by the Southern and Indian Oceans, respectively, with Westralunio carteri (Iredale, 1934) as the sole endemic freshwater mussel. Its conservation status is vulnerable. This species has a history of nomenclatural change and its systematic placement and population genetic history are largely unknown. We sampled 46 individuals from 13 sites across W. carteri’s distribution and sequenced two mitochondrial genes (16S rDNA and cytochrome c oxidase subunit I) and one nuclear gene (28S rDNA). The mitochondrial haplotype networks and COI phylogenies revealed three evolutionarily significant units (ESUs): “W. carteri” I including the west coast populations, “W. carteri” II from the south and south-eastern range, and “W. carteri” III only occurring in the south-western tip of Australia. Four species delimitation methods identified two molecular operational taxonomic units supporting two distinct species (“W. carteri” I and “W. carteri” II + III). Phylogeographic patterns revealed herein confirm the historical separation of Western and Southern paleo-basins, also highlighting the isolation of the south-western extremity of the region. This underlines the need for taxonomic revision and will require a re-evaluation of W. carteri’s conservation status.

Freshwater mussels are ecosystem engineers and keystone species in aquatic environments. Unfortunately, due to dramatic declines this fauna is among the most threatened globally. Here, we clarify the taxonomy and biogeography of Russian Unionidae species based on the most comprehensive multi-locus dataset sampled to date. We revise the distribution and assess the conservation status for each species. This fauna comprises 16 native species from 11 genera and 4 tribes: Anodonta , Pseudanodonta (Anodontini); Amuranodonta , Beringiana , Buldowskia , Cristaria , Sinanodonta (Cristariini); Middendorffinaia , Nodularia , Unio (Unionini); and Lanceolaria (Lanceolariini). No country-level endemic species are known in Russia, except for Buldowskia suifunica that may also occur in China. Sinanodonta woodiana , a non-native species, was introduced from China. Russia comprises the northern parts of Western and Eastern Palearctic subregions. The first subregion with six species encompasses a huge area from the western boundary of Russia to the Lena Basin in Siberia. The second subregion with 10 species covers the Amur Basin, rivers east of the Lena Basin, coastal basins of the Japan Sea, and the North Pacific Islands. The fauna of Russia primarily includes widespread generalist species that are here considered Least Concern (LC). However, Buldowskia suifunica and Sinanodonta lauta have restricted distributions and are assessed here as Vulnerable (VU) and Endangered (EN), respectively.

ABSTRACT Historically, the thick‐shelled river mussel (Unio crassus agg. complex) was considered a single, widespread species across Europe. However, recent phylogenetic taxonomic revisions have delineated 12 species from this complex, including Unio crassus (s. str. Philipsson in Retzius, 1788) and Unio nanus (Lamarck, 1819 stat. rev.), which exhibit substantial range overlap and broad European distributions. Understanding their fine‐scale genetic diversity, population structure, and potential for recent or ancient hybridization is critical for effective conservation planning. This study investigated the genetic diversity and structure of U. crassus and U. nanus across Europe, examining the influence of glacial disturbance history and host‐fish associations. Using mitochondrial (COI) and nuclear (microsatellite) markers on 60 populations, we revealed a discordance between mitochondrial and nuclear structuring, suggesting ancient introgression. Crucially, no evidence of recent hybridization was detected between U. crassus and U. nanus. We found significantly higher nuclear genetic diversity in U. crassus compared to U. nanus. Our findings indicate an older Black Sea–Caspian Sea divergence and ancient introgression between U. nanus and U. crassus, as well as distinct postglacial colonization routes: a Western route for U. nanus and an Eastern route for U. crassus, converging in a secondary contact zone. Our results highlight the strong influence of host‐fish associations and glacial history in shaping the genetic patterns of these mussels, underscoring the need to incorporate intraspecific genetic diversity into conservation strategies. As shell morphology proved unreliable for species identification, we recommend DNA barcoding for reliable species recognition and suggest further research into host‐fish preferences to improve conservation efforts. This paper presents novel findings on the genetic diversity of the recently described thick‐shelled river mussel complex, combining nuclear, mitochondrial, and morphometric markers in relation to European host‐fish colonization patterns. In particular, we identified currently unknown contact zones across their European distribution and found pronounced differences in the genetic diversity among the different species within the U. crassus complex.

The diversity and taxonomy of anodontine species in Lake Baikal and Transbaikalia region has been contentious since it is based on a typological species concept, the so called \"Comparatory Method\". Using this method, six Comparatory anodontine species have been described for the study area as belonging to the genus Colletopterum. This genus was separated from Anodonta based on shell characteristics and further split into two subgenera, i.e. Colletopterum sensu stricto and Colletopterum (Piscinaliana). However, many authors do not recognize this separation maintaining all Colletopterum forms within Anodonta. The current study clarifies the taxonomy and systematics of Anodontinae in this region, using a combination of molecular, morphological and anatomical data. All previously recognized Comparatory forms are here recognized as a single species, i.e. Anodonta anatina.

A high number of grayling (Thymallus) species have been described from the Altai-Sayan mountain region, for which little to no genetic information is available. We investigated genetic relationships within this genus of salmonid fishes using mtDNA and microsatellite markers. The analysis focused on three putative species, Markakol grayling (T. brevicephalus), Upper Ob grayling (T. nikolskyi) and Mongolian grayling (T. brevirostris). We integrated these data with mtDNA sequences from eight other grayling species, including two of geographic proximity to the study area. Phylogenetic results revealed three pairs of reciprocally monophyletic sister species, two of which were phylogenetically juxtaposed across isolated drainage systems. Based on microsatellite analysis (up to 10 loci) no evidence of hybridization or introgression was found among species, supporting the mtDNA phylogeny. Based on a time-calibrated tree, divergence times between the focal taxa ranged from 0.36 to 1.1 MY. The genetic data support the distinction of these species and underscore the importance of paleohydrological dynamics in this biogeographically complex region. Well-documented mega-flood events in the region provide a model of how the contemporary cross-basin distribution of these species may have evolved.

The number of non-native freshwater fishes in the Iberian Peninsula has been greatly increasing. In this study, individuals of the genus Phoxinus were detected in 18 out of 138 stream sites sampled across the Douro Basin in 2017 and 2018. A total of 26 individuals were barcoded using partial cytochrome c oxidase subunit I (COI) and cytochrome b (cytb) genes for species identification and determination of geographical origin. Molecular data provided the first record of a second Phoxinus species in western Douro (Portugal, Iberian Peninsula), with haplotypes closely matching those found in the Charente River (southern France). This species is suspected to be a recent introduction associated with the use of minnows as live bait by freshwater anglers, which was facilitated by human movements between France and Portugal. Individuals from watercourses in eastern Douro (Spain) were genetically assigned to Phoxinus bigerri, an introduced species previously known for that region, which confirms reports of introduction events from Ebro to Douro Basin probably also related to freshwater angling and facilitated by geographic proximity. The potential ecological impacts of this genus in the region are unknown and need further investigation.