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We studied the food web structure and functioning of a coral reef ecosystem in the Marquesas Islands, French Polynesia, characterized by low coral cover, high sea surface temperature and meso- to eutrophic waters. The Marquesas constitute a relevant ecosystem to understand the functioning of low diversity reefs that are also subject to global change. A multi-tracer assessment of organic matter pathways was run to delineate ecosystem functioning, using analysis of fatty acids, bulk and compound specific stable isotope analysis and stable isotopes mixing models. Macroalgae and phytoplankton were the two major food sources fueling this food web with, however, some marked seasonal variations. Specifically, zooplankton relied on phytoplankton-derived organic matter and herbivorous fishes on macroalgae-derived organic matter to a much higher extent in summer than in winter (~ 75% vs.  ~ 15%, and ~ 70 to 75% vs.  ~ 5 to 15%, respectively) . Despite remarkably high δ 15 N values for all trophic compartments, likely due to local dynamics in the nitrogen stock, trophic levels of consumers were similar to those of other coral reef ecosystems. These findings shed light on the functioning of low coral cover systems, which are expected to expand worldwide under global change.

Understanding the processes that shape biodiversity is essential for effective environmental management. Across the world’s coral reefs, algal farming damselfish ( Stegastes sp.) modify the surrounding benthic community through their creation of algae “farms”. Using a long-term monitoring dataset (2005–2019) from Moorea Island, French Polynesia, we investigated whether the density of dusky damselfish ( Stegastes nigricans ) is associated with benthic habitat composition, the density of predators and/or competitors, and whether the survey area was inside or outside of a Marine Protected Area (MPA). We found no evidence that benthic cover or number of competitors were associated with dusky damselfish densities, both inside and outside MPAs. In contrast, fluctuations in dusky damselfish densities were negatively associated with the density of predators (e.g. Serranidae, Muraenidae and Scorpaenidae) in the preceding year in non-MPA areas, and both within and outside of MPAs when predator densities were high (2005–2010). These results suggest that healthy predator populations may be important for regulating the abundances of keystone species, such as algal farming damselfish, especially when predator densities are high.

Assessments of ecosystem functioning are a fundamental ecological challenge and an essential foundation for ecosystem‐based management. Species trophic position (TP) is essential to characterize food web architecture. However, despite the intuitive nature of the concept, empirically estimating TP is a challenging task due to the complexity of trophic interaction networks. Various methods are proposed to assess TPs, including using different sources of organic matter at the base of the food web (the ‘baseline’). However, it is often not clear which methodological approach and which baseline choices are the most reliable. Using an ecosystem‐wide assessment of a tropical reef (Marquesas Islands, with available data for 70 coral reef invertebrate and fish species), we tested whether different commonly used TP estimation methods yield similar results and, if not, whether it is possible to identify the most reliable method. We found significant differences in TP estimates of up to 1.7 TPs for the same species, depending on the method and the baseline used. When using bulk stable isotope data, the choice of the baseline significantly impacted TP values. Indeed, while nitrogen stable isotope (δ15N) values of macroalgae led to consistent TP estimates, those using phytoplankton generated unrealistically low TP estimates. The use of a conventional enrichment factor (i.e. 3.4‰) or a ‘variable’ enrichment factor (i.e. according to feeding guilds) also produced clear discrepancies between TP estimates. TPs obtained with δ15N values of source amino acids (compound‐specific isotope analysis) were close to those assessed with macroalgae. An opposite seasonal pattern was found, with significantly lower TPs in winter than in summer for most species, with particularly pronounced differences for lower TP species. We use the observed differences to discuss possible drivers of the diverging TP estimates and the potential ecological implications. Based on a case study from a remote coral reef ecosystem in the Pacific Ocean, this work analyses how several potential sources of organic matter (i.e. ‘baselines’) and calculation methods strongly affect assessments of trophic positions. We also demonstrated that seasonal temporality and feeding guild are important parameters to be considered.

Coral reefs across the globe are facing threats from a variety of anthropogenic disturbances. Consequently, the proportional representation of live scleractinian corals in the benthic community has declined substantially in many regions. In contrast, parts of the reef ecosystem around Mo’orea (French Polynesia) have displayed remarkable rebound potential. Nevertheless, detailed studies of when, where, and to what extent reefs have been disturbed and subsequently recovered in the different reef habitats are lacking. Using long-term monitoring data (2004−2018), we reveal that the spatiotemporal dynamics of benthic communities differ markedly between the contiguous inner (fringing and barrier) and outer (fore) reefs. Coral communities on inner reefs vary spatially but were remarkably stable over 15 yr, exhibiting consistent levels of coral and algal cover, with no evidence for disturbance-driven regimes or community transitions. In contrast, the outer reefs showed marked declines in coral cover following consecutive acute disturbances, but coral recovered rapidly thereafter. Nevertheless, community composition changed significantly, with Pocillopora replacing Acropora as the dominant genus at several sites, indicating a more subtle but potentially critical transition into an alternative state defined by the prevalence of a single, fast-growing genus. Inner reef stability and outer reef recovery provide evidence that the effects of environmental disturbances and chronic anthropogenic stressors can manifest in fundamentally different ways, depending on prevailing conditions. Our results suggest important ecological and physical links between inner and outer reef systems that influence the observed dynamics, emphasizing that reef ecosystem management and conservation strategies need to consider all habitats.

In the context of the general overexploitation of South Pacific reef fisheries, there is a global push to precisely define fishery parameters such as fishing effort, annual landings, and exploitation levels. In Bora-Bora, several surveys were performed to define the fishing grounds and the fishing effort of the reef fishery for the first time. Maps of the fishing grounds under different fishing pressures were created for the Bora-Bora reef fishery. The average fishing effort throughout the lagoon was 40 trips week −1 km −2 . Annual landings were estimated following two different methods: school participatory surveys and landing based on the catch per unit effort. These estimations were used to determine that the maximum sustainable yield of the island's fisheries was 6.5 tons km −2 year −1 . the reported annual yield in 2022 was 5.35 tons km −2 year −1 , under the estimated maximum sustainable yield. The level of exploitation of the fisheries was also estimated based on the catch size composition of the ten most fished species. This revealed that fishing is responsible for more than 50% of fish mortality in six of the ten studied species, and that catch length could be increased to optimize both catches and biomass. Overall, the Bora-Bora reef fishery may be experiencing growth overfishing (i.e., the catching of fish that are too small to maximise biological sustainability and economical yield), which can endanger stock recruitment in the future if no actions are taken.

Coral reefs have emerged as one of the ecosystems most vulnerable to climate variation and change. While the contribution of a warming climate to the loss of live coral cover has been well documented across large spatial and temporal scales, the associated effects on fish have not. Here, we respond to recent and repeated calls to assess the importance of local management in conserving coral reefs in the context of global climate change. Such information is important, as coral reef fish assemblages are the most species dense vertebrate communities on earth, contributing critical ecosystem functions and providing crucial ecosystem services to human societies in tropical countries. Our assessment of the impacts of the 1998 mass bleaching event on coral cover, reef structural complexity, and reef associated fishes spans 7 countries, 66 sites and 26 degrees of latitude in the Indian Ocean. Using Bayesian meta-analysis we show that changes in the size structure, diversity and trophic composition of the reef fish community have followed coral declines. Although the ocean scale integrity of these coral reef ecosystems has been lost, it is positive to see the effects are spatially variable at multiple scales, with impacts and vulnerability affected by geography but not management regime. Existing no-take marine protected areas still support high biomass of fish, however they had no positive affect on the ecosystem response to large-scale disturbance. This suggests a need for future conservation and management efforts to identify and protect regional refugia, which should be integrated into existing management frameworks and combined with policies to improve system-wide resilience to climate variation and change.

Lionfish (Pterois volitans and P. miles) have become a major concern in the western Atlantic and Caribbean since their introduction in the 1980s. Invasive lionfish can reach very high population densities on coral reefs in their invaded range, yet there are few data from their native range in the Indo-Pacific for comparison. We compiled data on the geographical distribution and density of Indo-Pacific lionfishes in their native ranges from published and unpublished underwater visual censuses and field collections. We found that lionfish in their native Indo-Pacific range are unevenly distributed, with higher densities in the Indian Ocean than in the Pacific. Lionfish densities increase significantly with increasing latitude, and are significantly higher in continental areas than around islands. In the Indo-Pacific, lionfishes are found not only on reefs but also on soft bottoms and in nearshore habitats such as seagrass beds and mangroves, and near estuaries. Native lionfish can be found at depths greater than 75 m. Because lionfish can be cryptic and secretive, we estimate that only similar to 1/8 of Indo-Pacific lionfishes are detected during general underwater visual censuses. In the Pacific Ocean, the relative abundance of lionfish in the catch of reef-fish larvae is of the same order of magnitude as the relative abundance of adult lionfish within reef fish assemblages. Overall the observed densities of lionfishes in the Indo-Pacific are much lower (max. 26.3 fish ha super(-1) than the densities reported in their invaded Atlantic range (max. 400 fish ha) super(-)1). We found no effects of fishing or pollution on the densities of lionfishes.

This paper presents a transdisciplinary study focusing on the socio-ecological mechanisms at play in the alteration of Moorea's (French Polynesia) coastline. Building on a previous study synthesizing the results from monitoring efforts of the island's coastline from 1977 to 2018, we offer a joint analysis of scientific and local perceptions of coastal changes and of the impacts of coastal armoring in Moorea. Drawing on ecological and ethnographic data (111 semi-structured interviews of Moorea residents and representatives from local authorities), we analyze the drivers invoked by near-shore residents to modify their coastline as well as the perceived effects of coastal artificialization on the near-shore marine biodiversity and topography. We also address the broader economic and political contexts under which the island's coastline is being increasingly transformed. Overall, our study highlights how the perceptions of increased erosion coupled to poorly enforced regulations drive the progressive armoring of the coastline through a diversity of private-based developments. We discuss how the latter have, both for scientists and residents, controversial community-wide economic, social, and ecological impacts.

Sensory abilities and preferences exhibited by mobile larvae during their transition to juvenile habitats can establish spatial heterogeneity that drives subsequent species interactions and dynamics of populations. We conducted a series of laboratory and field experiments using coral reef fish larvae (Chromis viridis) to determine: ecological determinants of settlement choice (conspecifics vs. heterospecifics vs. coral substrates); sensory mechanisms (visual, acoustic/vibratory, olfactory) underlying settlement choice; and sensory abilities (effective detection distances of habitat) under field conditions. C. viridis larvae responded positively to visual, acoustic/vibratory, and olfactory cues expressed by conspecifics. Overall, larvae chose compartments of experimental arenas containing conspecifics in 75% of trials, and failed to show any significant directional responses to heterospecifics or coral substrates. In field trials, C. viridis larvae detected reefs containing conspecifics using visual and/or acoustic/vibratory cues at distances < 75 cm; detection distances increased to < 375 cm when olfactory capacity was present (particularly for reefs located up-current). We conducted high performance liquid chromatography (HPLC) analyses of seawater containing C. viridis juveniles and isolated high concentrations of several organic compounds. Subsequent laboratory trials demonstrated that C. viridis larvae responded positively to only one of these organic compounds. This compound was characterized by a weak polarity and was detected at 230 nm with a 31-min retention time in HPLC. Overall, our results suggest that fishes may use a range of sensory mechanisms effective over different spatial scales to detect and choose settlement sites, and species-specific cues may play a vital role in establishment of spatial patterns at settlement.