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"Gao, Yu-Fu"
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De novo transcriptome sequencing and anthocyanin metabolite analysis reveals leaf color of Acer pseudosieboldianum in autumn
by
Zhao, Dong-Hui
,
Zhang, Jia-Qi
,
Li, Jia-Lin
in
A. pseudosieboldianum
,
Acer pseudosieboldianum
,
Analysis
2021
Background
Leaf color is an important ornamental trait of colored-leaf plants. The change of leaf color is closely related to the synthesis and accumulation of anthocyanins in leaves.
Acer pseudosieboldianum
is a colored-leaf tree native to Northeastern China, however, there was less knowledge in
Acer
about anthocyanins biosynthesis and many steps of the pathway remain unknown to date.
Results
Anthocyanins metabolite and transcript profiling were conducted using HPLC and ESI-MS/MS system and high-throughput RNA sequencing respectively. The results demonstrated that five anthocyanins were detected in this experiment. It is worth mentioning that Peonidin O-hexoside and Cyanidin 3, 5-O-diglucoside were abundant, especially Cyanidin 3, 5-O-diglucoside displayed significant differences in content change at two periods, meaning it may be play an important role for the final color. Transcriptome identification showed that a total of 67.47 Gb of clean data were obtained from our sequencing results. Functional annotation of unigenes, including comparison with COG and GO databases, yielded 35,316 unigene annotations. 16,521 differentially expressed genes were identified from a statistical analysis of differentially gene expression. The genes related to leaf color formation including PAL, ANS, DFR, F3H were selected. Also, we screened out the regulatory genes such as MYB, bHLH and WD40. Combined with the detection of metabolites, the gene pathways related to anthocyanin synthesis were analyzed.
Conclusions
Cyanidin 3, 5-O-diglucoside played an important role for the final color. The genes related to leaf color formation including PAL, ANS, DFR, F3H and regulatory genes such as MYB, bHLH and WD40 were selected. This study enriched the available transcriptome information for
A. pseudosieboldianum
and identified a series of differentially expressed genes related to leaf color, which provides valuable information for further study on the genetic mechanism of leaf color expression in
A. pseudosieboldianum
.
Journal Article
Anthocyanin metabolites and related regulatory genes analysis in leaves of Acer Pseudosieboldianum mutant during different periods of color change
by
Li, Xin-Yu
,
Lv, Wei-Wei
,
Rong, Li-Ping
in
Acer - genetics
,
Acer - metabolism
,
Acer Pseudosieboldianum
2025
Background
Acer pseudosieboldianum
(Pax) Komarov, is a colorful leaf species belonging to the family Aceraceae, mainly distributed in Northeast China, Russia, and northern Korea. The leaves of
Acer pseudosieboldianum
are green in spring and summer, and turning red in autumn, which is of high ornamental value. In previous study, a mutant maple was selected with alternating red-green leaf color in spring and summer. However, the reason for the color mutation was not clear. Therefore, UPLC /LC-MS and RNA-seq were used to analyze the anthocyanin components and related differentially expressed genes in the spring leaf color changes of
A. pseudosieboldianum
mutant, which can provide broader insights into the complex coloration process of leaf color.
Results
The results showed that the mutant leaves contained a total of 50 anthocyanin metabolites. In all differential metabolites of anthocyanins, Cyanidin-3,5-O-diglucoside, Cyanidin-3-O-glucoside, Cyanidin-3-O-sambubioside not only had higher content, but also showed significant changes at different stages. Especially, the consistent high content of anthocyanins in Cyanidin-3-O-glucoside, which are the main pigments for leaf color. In addition, 11,522 genes were found to be significantly differentially with 5,477 genes up-regulated, and 6,045 genes down-regulated. We identified relevant information for differentially expressed genes (DEGs) associated with leaf color, including 20 structural genes involved in anthocyanin biosynthesis, 12 transcription factors, and eight genes related to anthocyanin transport.
Conclusions
Among all anthocyanins of
A. pseudosieboldianum
mutant leaf, Cyanidin-3-O-glucoside remained high in all three stages of leaves, which is main substances for the leaf color. Additionally, 20 structure gene, 12 transcription factors and some genes associated with anthocyanin synthesis and transport were screened and there was a complex metabolic network in mutant leaves. This study provided a basis for resource innovation and landscaping applications of
Acer
plants by analyzing the anthocyanin metabolites and expression of DEGs in the leaf coloring process.
Journal Article
De novo transcriptome revealed genes involved in anthocyanin biosynthesis, transport, and regulation in a mutant of Acer pseudosieboldianum
by
Weng, Zhuo
,
Xu, Bo
,
Li, Xin-Yu
in
Acer pseudosieboldianu
,
Acer pseudosieboldianum
,
Animal Genetics and Genomics
2022
Background
Acer pseudosieboldianum
is a kind of excellent color-leafed plants, and well known for its red leaves in autumn. At the same time,
A. pseudosieboldianum
is one of the native tree species in the northeast of China, and it plays an important role in improving the lack of color-leafed plants in the north. In previous study, we found a mutant of the
A. pseudosieboldianum
that leaves intersect red and green in spring and summer. However, it is unclear which genes cause the color change of mutant leaves.
Results
In order to study the molecular mechanism of leaf color formation, we analyzed the leaves of the mutant group and the control group from
A. pseudosieboldianum
by RNA deep sequencing in this study. Using an Illumina sequencing platform, we obtained approximately 276,071,634 clean reads. After the sequences were filtered and assembled, the transcriptome data generated a total of 70,014 transcripts and 54,776 unigenes, of which 34,486 (62.96%) were successfully annotated in seven public databases. There were 8,609 significant DEGs identified between the control and mutant groups, including 4,897 upregulated and 3,712 downregulated genes. We identified 13 genes of DEGs for leaf color synthesis that was involved in the flavonoid pathway, 26 genes that encoded transcription factors, and eight genes associated with flavonoid transport.
Conclusion
Our results provided comprehensive gene expression information about
A. pseudosieboldianum
transcriptome, and directed the further study of accumulation of anthocyanin in
A. pseudosieboldianum
, aiming to provide insights into leaf coloring of it through transcriptome sequencing and analysis.
Journal Article
Intermittent Oxygen Inhalation with Proper Frequency Improves Overall Health Conditions and Alleviates Symptoms in a Population at High Risk of Chronic Mountain Sickness with Severe Symptoms
by
Bin Feng Wei-Hao Xu Yu-Qi Gao Fu-Yu Liu Peng Li Shan-Jun Zheng Lu-Yue Gai Gang Zhang
in
Adolescent
,
Adult
,
Aged
2016
Background: Oxygen inhalation therapy is essential for the treatment of patients with chronic mountain sickness (CMS), but the efficacy of oxygen inhalation for populations at high risk of CMS remains unknown. This research investigated whether oxygen inhalation therapy benefits populations at high risk of CMS. Methods: A total of 296 local residents living at an altitude of 3658 m were included; of which these were 25 diagnosed cases of CMS, 8 cases dropped out of the study, and 263 cases were included in the analysis. The subjects were divided into high-risk (180 ≤ hemoglobin (Hb) 〈210 g/L, n = 161) and low-risk (Hb 〈180 g/L, n = 102) groups, and the cases in each group were divided into severe symptom (CMS score ≥6) and mild symptom (CMS score 0-5) subgroups. Severe symptomatic population of either high- or low-risk CMS was randomly assigned to no oxygen intake group (A group) or oxygen intake 7 times/week group (D group); mild symptomatic population of either high- or low-risk CMS was randomly assigned to no oxygen intake group (A group), oxygen intake 2 times/week group (B group), and 4 times/week group (C group). The courses for oxygen intake were all 30 days. The CMS symptoms, sleep quality, physiological biomarkers, biochemical markers, etc., were recorded on the day before oxygen intake, on the 15th and 30th days of oxygen intake, and on the 15th day after terminating oxygen intake therapy. Results: A total of 263 residents were finally included in the analysis. Among these high-altitude residents, CMS symptom scores decreased for oxygen inhalation methods B, C, and D at 15 and 30 days after oxygen intake and 15 days after termination, including dyspnea, palpitation, and headache index, compared to those before oxygen intake (B group: Z = 5.604, 5.092, 5.741; C group: Z = 4.155, 4.068, 4.809; D group: Z = 6.021, 6.196, 5.331, at the 3 time points respectively; all P 〈 0.05/3 vs. before intake). However, dyspnea/palpitation (A group: Z = 5.003, 5.428, 5.493, both P 〈 0.05/3 vs. before intake) and headache (A group: Z = 4.263, 3.890, 4.040, both P 〈 0.05/3 vs. before intake) index decreased significantly also for oxygen inhalation method A at all the 3 time points. Cyanosis index decreased significantly 30 days after oxygen intake only in the group of participants administered the D method (Z= 2.701, P = 0.007). Tinnitus index decreased significantly in group A and D at 15 days (A group: Z = 3.377, P = 0.001, D group: Z = 3.150, P - 0.002), 30 days after oxygen intake (A group: Z = 2.836, P = 0.005, D group: Z = 5.963, P 〈 0.0001) and 15 days after termination (A group: Z- 2.734, P = 0.006, D group: Z - 4.049, P = 0.0001), and decreased significantly in the group B and C at 15 days after termination (B group: Z = 2.611, P = 0.009; C group: Z = 3.302, P = 0.001). In the population at high risk of CMS with severe symptoms, oxygen intake 7 times/weeksignificantly improved total symptom scores of severe symptoms at 15 days (4 [2, 5] vs. 5.5 [4, 7], Z = 2.890, P = 0.005) and 30 days (3 [1, 5] vs. 5.5 [2, 7], Z= 3.270, P = 0.001) after oxygen intake compared to no oxygen intake. In the population at high risk of CMS with mild symptoms, compared to no oxygen intake, oxygen intake 2 or 4 times/week did not improve the total symptom scores at 15 days (2 [1, 3], 3 [1, 4] vs. 3 [1.5, 5]; 2"2 = 2.490, P= 0.288), and at 30 days (2 [0, 4], 2 [1, 4.5] vs. 3 [2, 5];2"2- 3.730, P = 0.155) after oxygen intake. In the population at low risk ofCMS, oxygen intake did not significantly change the white cell count and red cell count compared to no oxygen intake, neither in the severe symptomatic population nor in the mild symptomatic population. Conclusions: Intermittent oxygen inhalation with proper frequency might alleviate symptoms in residents at high altitude by improving their overall health conditions. Administration of oxygen inhalation therapy 2-4 times/week might not benefit populations at high risk of CMS with mild CMS symptoms while administration of therapy 7 times/week might benefit those with severe symptoms. Oxygen inhalation therapy is not recommended for low-risk CMS populations.
Journal Article
Edge enhancement of gravity anomalies and gravity gradient tensors using an improved small sub-domain filtering method
In order to enhance geological body boundary visual effects in images and improve interpretation accuracy using gravity and magnetic field data, we propose an improved small sub-domain filtering method to enhance gravity anomalies and gravity gradient tensors. We discuss the effect of Gaussian white noise on the improved small sub-domain filtering method, as well as analyze the effect of window size on geological body edge recognition at different extension directions. Model experiments show that the improved small sub-domain filtering method is less affected by noise, filter window size, and geological body edge direction so it can more accurately depict geological body edges than the conventional small sub-domain filtering method. It also shows that deeply buried body edges can be well delineated through increasing the filter window size. In application, the enhanced gravity anomalies and calculated gravity gradient tensors of the Hulin basin show that the improved small sub-domain filtering can recognize more horizontal fault locations than the conventional method.
Journal Article
Hot Deformation Behavior and Flow Stress Prediction of Ultra Purified 17% Cr Ferritic Stainless Steel Stabilized with Nb and Ti
by
Fei GAO Fu-xiao YU Hai-tao LIU Zhen-yu LIU
in
Applied and Technical Physics
,
Compression tests
,
Constitutive equations
2015
The hot deformation behavior of ultra purified 17% Cr ferritic stainless steel stabilized with Nb and Ti was investigated using axisymmetric hot compression tests on a thermomechanical simulator.The deformation was carried out at the temperatures ranging from 700 to 1 100℃ and strain rates from 1to 10s-1.The microstructure was investigated using electron backscattering diffraction.The effects of temperature and strain rate on deformation behavior were represented by Zener-Hollomon parameter in an exponent type equation.The effect of strain was incorporated in the constitutive equation by establishing polynomial relationship between the material constants and strain.A sixth order polynomial was suitable to represent the effect of strain.The modified constitutive equation considering the effect of strain was developed and could predict the flow stress throughout the deformation conditions except at800℃in 1s-1 and at 700℃in 5and 10s-1.Losing the reliability of the modified constitutive equation was possibly ascribed to the increase in average Taylor factor at 800℃in 1s-1 and the increase in temperature at 700℃in 5and10s-1 during hot deformation.The optimum window for improving product quality of the ferritic stainless steels was identified as hot rolling at a low finisher entry temperature of 700℃,which can be achieved in practical production.
Journal Article
An investigation of numerical aperture of air-core photonic bandgap fiber
2015
Air-core photonic bandgap fiber (PBF) is the perfect choice of the next-generation fiber optical gyroscope (FOG), with excellent temperature, electromagnetism and radiation adaptability. Numerical aperture is an important optical parameter of PBF for application in FOG. The PBF’s maximum theoretical numerical aperture (NAmax) is calculated and compared with the far-field numerical aperture (NAeff) through experiments. The result indicates that the relationship between NAmax and NAeff has much stronger dependence on wavelength than that of the conventional fiber, and they get close at wavelengths near the middle of the photonic bandgap with the error less than 5%. Furthermore, photonic bandgap fiber optical gyroscope (PBFOG) with no fusion splicing points is proposed, and the optimization method and results of the PBF’s structure parameters for application in PBFOG are given from the aspect of numerical aperture.
Journal Article
Antidepressant- and anxiolytic effects of the novel melatonin agonist Neu-P11 in rodent models
by
Shao-wen TIAN Moshe LAUDON Li HAN Jun GAO Fu-lian HUANG Yu-feng YANG Hai-feng DENG
in
Animals
,
Anti-Anxiety Agents - administration & dosage
,
Anti-Anxiety Agents - pharmacology
2010
Aim: To investigate the potential antidepressant and anxiolytic effects of Neu-P11, a novel melatonin agonist, in two models of depression in rats and a model of anxiety in mice. Methods: In the learned helplessness test (LH), Neu-P11 or melatonin (25-100 mg/kg, ip) was administered to rats 2 h before the beginning of the dark phase once a day for 5 days and the number of escape failures and intertrial crossings during the test phase were recorded. In the forced swimming test (FST), rats received a single or repeated administration of Neu-P11 (25-100 mg/kg, ip). The total period of immobility during the test phase was assessed. In the elevated plus-maze test (EPM), mice were treated with NeuPll (25-100 mg/kg, ip) or melatonin in the morning or in the evening and tested 2 h later. The percentage of time spent in the open arms and the open arms entries were assessed. Results: In the LH test, Neu-P11 but not melatonin significantly decreased the escape deficit and had no effect on the intertrial crossings. In the FST, a single or repeated administration of Neu-P11, either in the morning or in the evening, significantly decreased the duration of immobility. In the EPM test, Neu-P11 significantly increased the percentage of time spent in the open arms and the open arms entries irrespective to the time of administration. Melatonin was effective only when administered in the afternoon. Conclusion: The results demonstrate that Neu-P11 exerts antidepressant and anxiolytic activities in rodent models.
Journal Article
Linking vegetation cover patterns to hydrological responses using two process-based pattern indices at the plot scale
by
LIU Yu FU BoJie LV YiHe GAO GuangYao WANG Shuai ZHOU Ji
in
Earth and Environmental Science
,
Earth Sciences
,
Heterogeneity
2013
Vegetation cover pattern is one of the factors controlling hydrological processes. Spatially distributed models are the primary tools previously applied to document the effect of vegetation cover patterns on runoff and soil erosion. Models provide precise estimations of runoff and sediment yields for a given vegetation cover pattern. However, difficulties in parameterization and the problematic explanation of the causes of runoff and sedimentation rates variation weaken prediction capability of these models. Landscape pattern analysis employing pattern indices based on runoff and soil erosion mechanism provides new tools for finding a solution. In this study, the vegetation cover pattern was linked with runoff and soil erosion by two previously de- veloped pattern indices, which were modified in this study, the Directional Leakiness Index (DL[) and Flowlength. Although they use different formats, both indices involve connectivity of sources ,areas (interpatch bare areas). The indices were revised by bringing in the functional heterogeneity of the plant cover types and the landscape position. Using both artificial and field verified vegetation cover maps, observed runoff and sediment production on experiment plots, we tested the indices' efficiency and compared the indices with their antecedents. The results illustrate that the modified indices are more effective in indicating runoff at the plot/hillslope scale than their antecedents. However, sediment export levels are not provided by the modified indices. This can be attributed to multi-factor interaction on the hydrological process, the feedback mechanism between the hydrological function of cover patterns and threshold phenomena in hydrological processes.
Journal Article
AIIocryptopine and benzyltetrahydropalmatine block hERG potassium channels expressed in HEK293 cells
by
Kun LIN Yu-qi LIU Bin XU Jin-liao GAO Yi-cheng FU Yu CHEN Qiao XUE Li YANG
in
HEK293细胞
,
pcDNA3
,
动作电位
2013
Aim: AIIocryptopine (ALL) is an alkaloid extracted from Corydalis decumbens (Thunb) Pers. Papaveraceae, whereas benzyltetrahydropalmatine (BTHP) is a derivative of tetrahydropalmatine extracted from Corydalis ambigua (Pall) Cham et Schlecht. The aim of this study was to investigate the effects of ALL and BTHP on the human ether-a-go-go related gene (hERG) current expressed in HEK293 cells. Methods: Cultured HEK293 cells were transiently transfected with hERG channel cDNA plasmid pcDNA3.1 using Lipofectamine. The whole-cell current I_HERG was evoked and recorded using Axon MultiClamp 700B amplifier. The drugs were applied via supserfusion. Results: Both ALL and BTHP reversibly suppressed the amplitude and density of I_HERG in concentration- and voltage-dependent manners (the respective IC50 value was 49.65 and 22.38 μmol/L). BTHP (30 μmol/L) caused a significant negative shift of the steady-state inactivation curve of I_HERG, while ALL (30 μmol/L) did not affect the steady-state inactivation of I_HERG. Furthermore, BTHP, but not ALL, shortened the time constants of fast inactivation and slow time constants of deactivation of I_HERG. But both the drugs markedly lengthened the time constants for recovery of I_HERG from inactivation. Using action potential waveform pulses, it was found that both the drugs at 30 μmol/L significantly suppressed the current densities in the late phase of action potential, but did not significantly affect the current densities in the early phase of action potential. Conclusion: Both ALL and BTHP derived from Chinese herbs potently block hERG current.
Journal Article