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Agroforestry systems with a range of native and often neglected and underutilized tree species (NUS) are increasingly recognized for their potential role in restoration, simultaneously providing ecological and livelihood benefits. Successful adoption of these systems requires knowledge about beneficial species, system-level potential profitability, and barriers faced by farmers. Such information is essential but lacking for most NUS. We analyzed the economic potential of NUS in diverse smallholder-managed agroforestry systems in the Peruvian Amazon. Through semi-structured surveys with local stakeholders (n = 40), we identified 10 native Amazonian NUS fruit with ecological, nutritious and commercial benefits. We then simulated the potential revenue per species and system-level profit of an agroforestry system designed with the 10 NUS. Our projections suggest that a diverse NUS-based agroforestry system can outcompete most alternative land-uses in the region on a per hectare profit basis. This shows that including NUS in restoration efforts could provide economic benefits for smallholders. To realize this potential, we recommend adapted interventions, e.g., increased farmer access to planting material, technical support for production and capacity building with a focus on high-potential NUS.

The Brazil nut is a highly valuable non‐timber forest product from a wild, hyperdominant, emergent tree species that is increasingly vulnerable and exposed to habitat degradation. We provide evidence for how Brazil nut genetic resources are negatively affected by forest degradation and discuss the consequences of this for reproductive success. To avoid negative effects of genetic erosion and inbreeding, we discuss the need to cease large‐scale forest conversion and to promote landscape connectivity. This could support gene flow, maintain genetic diversity across individuals reproducing in clustered patterns, and contribute to securing the long‐termed reproductive viability and resilience of this high socio‐economically and ecologically valuable species. Societal Impact Statement The Brazil nut is a highly valuable non‐timber forest product from a wild, hyperdominant, emergent tree species that is increasingly vulnerable and exposed to habitat degradation. We provide evidence for how Brazil nut genetic resources are negatively affected by forest degradation and discuss the consequences of this for reproductive success. To avoid negative effects of genetic erosion and inbreeding, we discuss the need to cease large‐scale forest conversion and to promote landscape connectivity. This could support gene flow, maintain genetic diversity across individuals reproducing in clustered patterns and contribute to securing the long‐termed reproductive viability and resilience of this high socio‐economically and ecologically valuable species. Summary Ecosystem degradation in the Amazon drives this biodiverse rainforest toward an ecological tipping point. Sustainable management and restoration of degraded rainforest therein are central to counteract this crisis. One hyperdominant, keystone species of high ecological and socio‐economic value, the Brazil nut tree, offers additional benefits as a major carbon sink and a nutritional source of the most prominent globally traded non‐timber forest product. Despite Brazil nut trees being protected by conservation regulation, forest degradation threatens sufficient gene‐flow among Brazil nut tree populations. This has impacts on the reproductive success, genetic diversity, and consequently on the resilience of this species to environmental change. We used 13 microsatellite loci to explore the consequences of forest degradation on the reduction in genetic diversity of Brazil nut populations. We examined the clustering of genetically related individuals as fine‐scale genetic structure (FSGS) and the variation in genetic diversity and inbreeding across adult trees and seedlings along a categorized forest‐degradation gradient ranging from conserved to degraded areas. In addition, we applied direct and indirect approaches to estimate contemporary pollen‐mediated gene flow. We found significant levels of FSGS, comparable to other similar tropical tree species. Brazil nut seedlings had consistently lower genetic diversity and higher inbreeding than adults, significantly associated with the degree of forest degradation of their origin. We observed limited pollen dispersal, differential patterns in pollen heterogeneity, and disproportionate paternal‐assignment rates from few individuals shaping the effective population size in our dataset. We discuss how this evidence for reproduction vulnerability may affect the genetic resources and undermine the resilience of this ecological and socio‐economic system in Peru.

Brazil nuts are an economically important non-timber forest product throughout the Amazon Basin, but the forests in which they grow are under threat of severe degradation by logging, road building, agricultural expansion, and forest fires. As a result, many Brazil nut trees grow within a mosaic of young secondary forest, primary forest remnants and agricultural fields. Little is known about the reproductive ecology and fruit production of Brazil nut in such degraded landscapes. Previous studies on Brazil nut productivity did not explicitly address forest degradation as a factor. In this study, we analyzed the extent to which Brazil nut fruit production is affected by the level of forest degradation. We collected 3 years of fruit production data of 126 Brazil nut trees occurring in degraded forest (the above-mentioned mosaics) and closed canopy (i.e., undegraded) forest in and around the Tambopata National Reserve in Madre de Dios, Peru. We analyzed the effect of forest degradation at two different levels: at the site type (i.e., degraded vs. undegraded forest) and the individual tree level (quantified as stand basal area and stem density around the individual Brazil nut trees). Stand basal area around the individual Brazil nut trees significantly positively influenced tree fruit production in all 3 years and stem density in year 2 and 3, with strongest effects in the 3rd year, and weakest effect in the 1st year, coinciding with an El Niño year. Trees in undegraded forest produced more fruits in the 2nd and 3rd year than trees in degraded forest (29.4% and 35.8% more, respectively), but not in the 1st year in which trees in undegraded forest produced 31.7% less fruits than trees in degraded forest. These within year effects were not significant, although the effects significantly differed between years. Our results show that forest degradation can affect Brazil nut fruit production, and suggest that the strength (and possibly the sign) of this effect might be different in (extreme) El Niño years. This illustrates the potential importance of restoring degraded forest to enhance resilience and protect the livelihoods of people depending on the Brazil nut trade.

The ecological role and potential management of arthropod-pathogenic fungi (APF) in neotropical forests are of great importance, but they are still little studied. The present study achieves a first estimation of diversity patterns, structure and local ecology of APF in the Amazonian forests of the Cusco and Madre de Dios regions in southern Peru. We sampled 39 localities in five basins, examining 277 specimens, four families and 20 genera with 82 species (40% morphospecies). The most diverse families were Cordycipitaceae with 51 species and Ophiocordicipitaceae (22). Cusco obtained a greater diversity: four families, 18 genera and 58 morphospecies, with the Urubamba and Amarumayu basins having greater diversity (31 and 20 species); for the Madre de Dios basin, there was 28 species. In both regions, the richness values were corroborated by Fisher’s Alpha and Chao-1 indexes, the latter identifies Amarumayu and Araza with maximum values. The NMDS analysis showed a good pattern of separation of the two APF communities, although an important group was shared. Elevation was identified as the environmental variable with the strongest influence on diversity and structure. The dominance analysis identified Ophiocordyceps australis and Paraisaria amazonica as hyperdominant, due to their density and distribution. The local ecological patterns in Pongo de Qoñec show that the richness of entomopathogens is largely favored by low understory light, associated with pristine or little-impacted habitats. We conclude that this first approximation of the knowledge of the high diversity of APF in southern Peru is still insufficient, but it demonstrates the importance of their conservation and represents enormous potential for sustainable management.