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21
result(s) for
"García-Peña, Francisco J."
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Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota
by
Lehours, Philippe
,
Piccirillo, Alessandra
,
Forster, Samuel C.
in
631/158/1469
,
631/181/757
,
631/326/41/2530
2017
Campylobacter fetus
is a venereal pathogen of cattle and sheep, and an opportunistic human pathogen. It is often assumed that
C. fetus
infection occurs in humans as a zoonosis through food chain transmission. Here we show that mammalian
C. fetus
consists of distinct evolutionary lineages, primarily associated with either human or bovine hosts. We use whole-genome phylogenetics on 182 strains from 17 countries to provide evidence that
C. fetus
may have originated in humans around 10,500 years ago and may have “jumped” into cattle during the livestock domestication period. We detect
C. fetus
genomes in 8% of healthy human fecal metagenomes, where the human-associated lineages are the dominant type (78%). Thus, our work suggests that
C. fetus
is an unappreciated human intestinal pathobiont likely spread by human to human transmission. This genome-based evolutionary framework will facilitate
C. fetus
epidemiology research and the development of improved molecular diagnostics and prevention schemes for this neglected pathogen.
Human infections with
Campylobacter fetus
are often assumed to be derived from livestock. Here, Iraola et al. provide evidence that healthy humans may act as carriers and dispersers, and
C. fetus
may have originated in humans as an intestinal pathobiont and then adapted as a livestock pathogen.
Journal Article
The First Report of Mycoplasmas in Antarctic Pinnipeds: The Results of a Survey
by
Pedraza-Díaz, Susana
,
Ramírez, Ana S.
,
Vega-Orellana, Orestes M.
in
Animals
,
Antarctic fur seal
,
Cloning
2025
The aim of this study was to investigate the presence of Mycoplasma spp. and their identification in seals from Antarctica. During January and February 2010, 59 Antarctic fur seals (Arctocephalus gazella), 17 Weddell seals (Leptonychotes weddellii), and 5 Southern elephant seals (Mirounga leonina) were captured in three Antarctic islands. Oral and genital samples were collected, cultured, and cloned. The Intergenic Spacer Region 16S-23S rDNA (ISR) PCR products were sent for sequencing. Seventy-four (91.4%) out of the eighty-one seals sampled were PCR positive. From those, 57 isolates were cultured. Mycoplasmas were more prevalent in the mouth in comparison to the reproductive tract. The percentage of isolates were 76.3%, 58.8%, and 40.0% for Antarctic fur seals, Weddell seals, and Southern elephant seals, respectively. The ISR sequences divided the isolates into six clusters. Four clusters presented a very high similarity percentage with mycoplasma sequences obtained from seals. However, none of these mycoplasmas have been described to date. Cluster 1 is also close to M. miroungigenitalium. This study represents the first report of Mycoplasma species adapted to Antarctic pinnipeds. The findings contribute to the understanding of the ecology of mycoplasmas in Antarctic pinnipeds.
Journal Article
Identification of Novel Genetic Markers Associated with Clinical Phenotypes of Systemic Sclerosis through a Genome-Wide Association Strategy
by
van Laar, Jacob
,
Gorlova, Olga
,
Smith, Vanessa
in
Alleles
,
Autoantibodies
,
Autoantibodies - immunology
2011
The aim of this study was to determine, through a genome-wide association study (GWAS), the genetic components contributing to different clinical sub-phenotypes of systemic sclerosis (SSc). We considered limited (lcSSc) and diffuse (dcSSc) cutaneous involvement, and the relationships with presence of the SSc-specific auto-antibodies, anti-centromere (ACA), and anti-topoisomerase I (ATA). Four GWAS cohorts, comprising 2,296 SSc patients and 5,171 healthy controls, were meta-analyzed looking for associations in the selected subgroups. Eighteen polymorphisms were further tested in nine independent cohorts comprising an additional 3,175 SSc patients and 4,971 controls. Conditional analysis for associated SNPs in the HLA region was performed to explore their independent association in antibody subgroups. Overall analysis showed that non-HLA polymorphism rs11642873 in IRF8 gene to be associated at GWAS level with lcSSc (P = 2.32×10(-12), OR = 0.75). Also, rs12540874 in GRB10 gene (P = 1.27 × 10(-6), OR = 1.15) and rs11047102 in SOX5 gene (P = 1.39×10(-7), OR = 1.36) showed a suggestive association with lcSSc and ACA subgroups respectively. In the HLA region, we observed highly associated allelic combinations in the HLA-DQB1 locus with ACA (P = 1.79×10(-61), OR = 2.48), in the HLA-DPA1/B1 loci with ATA (P = 4.57×10(-76), OR = 8.84), and in NOTCH4 with ACA P = 8.84×10(-21), OR = 0.55) and ATA (P = 1.14×10(-8), OR = 0.54). We have identified three new non-HLA genes (IRF8, GRB10, and SOX5) associated with SSc clinical and auto-antibody subgroups. Within the HLA region, HLA-DQB1, HLA-DPA1/B1, and NOTCH4 associations with SSc are likely confined to specific auto-antibodies. These data emphasize the differential genetic components of subphenotypes of SSc.
Journal Article
Infection Rates by Dengue Virus in Mosquitoes and the Influence of Temperature May Be Related to Different Endemicity Patterns in Three Colombian Cities
by
Gómez-Palacio, Andrés
,
Arboleda-Sánchez, Sair
,
Peña-García, Víctor
in
Aedes - virology
,
Animals
,
Cities
2016
Colombia is an endemic country for dengue fever where the four serotypes of virus dengue (DENV1–4) circulate simultaneously, and all types are responsible for dengue cases in the country. The control strategies are guided by entomological surveillance. However, heterogeneity in aedic indices is not well correlated with the incidence of the disease in cities such as Riohacha, Bello and Villavicencio. As an alternative, molecular detection of dengue virus in mosquitoes has been proposed as a useful tool for epidemiological surveillance and identification of serotypes circulating in field. We conducted a spatiotemporal fieldwork in these cities to capture adult mosquitoes to assess vector infection and explain the differences between Breteau indices and disease incidence. DENV infection in females and DENV serotype identification were evaluated and infection rates (IR) were estimated. The relationship between density, dengue cases and vector index was also estimated with logistic regression modeling and Pearson’s correlation coefficient. The lack of association between aedic indices and dengue incidence is in agreement with the weak associations between the density of the mosquitoes and their infection with DENV in the three cities. However, association was evident between the IR and dengue cases in Villavicencio. Furthermore, we found important negative associations between temperature and lag time from two to six weeks in Riohacha. We conclude that density of mosquitoes is not a good predictor of dengue cases. Instead, IR and temperature might explain better such heterogeneity.
Journal Article
Advancements in dementia research, diagnostics, and care in Latin America: Highlights from the 2023 Alzheimer's Association International conference satellite symposium in Mexico City
by
García‐Peña, Carmen
,
Damian, Andrés
,
Llibre‐Guerra, Jorge J
in
Alzheimer Disease - diagnosis
,
Alzheimer Disease - genetics
,
Alzheimer Disease - therapy
2024
INTRODUCTION
While Latin America (LatAm) is facing an increasing burden of dementia due to the rapid aging of the population, it remains underrepresented in dementia research, diagnostics, and care.
METHODS
In 2023, the Alzheimer's Association hosted its eighth satellite symposium in Mexico, highlighting emerging dementia research, priorities, and challenges within LatAm.
RESULTS
Significant initiatives in the region, including intracountry support, showcased their efforts in fostering national and international collaborations; genetic studies unveiled the unique genetic admixture in LatAm; researchers conducting emerging clinical trials discussed ongoing culturally specific interventions; and the urgent need to harmonize practices and studies, improve diagnosis and care, and use affordable biomarkers in the region was highlighted.
DISCUSSION
The myriad of topics discussed at the 2023 AAIC satellite symposium highlighted the growing research efforts in LatAm, providing valuable insights into dementia biology, genetics, epidemiology, treatment, and care.
Journal Article
The effect of prophylactic anticoagulation on major bleeding events in hospitalized patients with chronic kidney disease and lower limb fractures: a phase 2, randomized, double-blind, controlled trial
by
Ruiz-Ochoa, Francisco
,
Chávez-Alonso, Gael
,
Gómez-Fregoso, Juan A.
in
Anticoagulants (Medicine)
,
Anticoagulation
,
Bleed
2025
Introduction
Patients with chronic kidney disease (CKD) have an increased risk of lower limbs fractures. During hospitalization for a fracture, these patients are also at higher risk of thrombotic events; therefore, prophylactic anticoagulation is often recommended. However, in advanced CKD the bleeding risk may outweigh the potential benefit of thrombosis prevention. The aim of our study was to evaluate whether enoxaparin prophylaxis compared with placebo influences the risk of major bleeding and thrombotic events in patients with advanced CKD hospitalized with lower limb fractures.
Methods
In a phase 2 randomized controlled trial, from March 2019 to October 2024, patients with lower limb fracture and advanced CKD were eligible. We randomly assigned 61 patients to the placebo (
N
= 30) and anticoagulation groups (enoxaparin 40 mg;
N
= 31). Primary outcome was the risk of major bleeding. The main secondary objectives were risk of thrombosis, death, number of transfusions, dialysis requirement, hospitalization days, and the adverse events (AEs) related to anticoagulation.
Results
Both groups were similar, mean (SD) age of 65 (19) years; 54% were women, the eGFR of 24 ml/min/1.73m
2
. Hip fracture predominates (45.9%), followed by femur and tibia (31.1% and 23%, respectively). The primary outcome major bleeding occurred in 5 (16.1%) in the enoxaparin group and 4 (13.3%) in the placebo group. After adjusted analysis, comparing the enoxaparin with the placebo group, no increase in the risk of bleeding was observed (OR 1.28, CI 0.29–6.06,
p
= 0.741), nor was stratifying by CKD stages (p = > 0.05). Thrombosis occurred in three (4.9%) patients: two (6.7%) in the placebo group and one (3.2%) in the enoxaparin group. Hospitalization days were fewer in the placebo group compared to the enoxaparin group (14 vs. 19,
p
= 0.023), reducing the hospital stay by 5 days (95% CI − 10.52 to − 0.09;
p
= 0.046). AEs attributed to the intervention, gastrointestinal bleeding occurred in 2 and 1 patient in the placebo and enoxaparin groups, respectively.
Conclusions
In patients with advanced CKD and lower limb fracture, prophylactic anticoagulation with enoxaparin, compared with no anticoagulation, did not promote more major bleeding. The incidence of DVT was very low in both groups; however, the study was not powered to evaluate differences in thrombosis risk, but associated with prolonged hospital stay, without clear evidence of an increased risk of major bleeding. These findings suggest that further studies are warranted to clarify the risk–benefit balance of anticoagulation in this population.
Trial registration
ClinicalTrials.gov, ID NCT06795698 Retrospectively registered 28/12/2024, IRB approval 257/18.
Journal Article
Novel identification of the IRF7 region as an anticentromere autoantibody propensity locus in systemic sclerosis
by
Mayes, Maureen D
,
Tsao, Betty P
,
Agarwal, Sandeep K
in
Antibodies, Antinuclear - biosynthesis
,
Antibodies, Antinuclear - blood
,
Autoimmune diseases
2012
Objective Systemic sclerosis (SSc) and systemic lupus erythematosus (SLE) are related chronic autoimmune diseases of complex aetiology in which the interferon (IFN) pathway plays a key role. Recent studies have reported an association between IRF7 and SLE which confers a risk to autoantibody production. A study was undertaken to investigate whether the IRF7 genomic region is also involved in susceptibility to SSc and the main clinical features. Methods Two case-control sets of Caucasian origin from the USA and Spain, comprising a total of 2316 cases of SSc and 2347 healthy controls, were included in the study. Five single nucleotide polymorphisms (SNPs) in the PHRF1-IRF7-CDHR5 locus were genotyped using TaqMan allelic discrimination technology. A meta-analysis was performed to test the overall effect of these genetic variants on SSc. Results Four out of five analysed SNPs were significantly associated with the presence of anticentromere autoantibodies (ACA) in the patients with SSc in the combined analysis (rs1131665: pFDR=6.14 × 10−4, OR=0.78; rs4963128: pFDR=6.14 × 10−4, OR=0.79; rs702966: pFDR=3.83 × 10−3, OR=0.82; and rs2246614: pFDR=3.83 × 10−3, OR=0.83). Significant p values were also obtained when the disease was tested globally; however, the statistical significance was lost when the ACA-positive patients were excluded from the study, suggesting that these associations rely on ACA positivity. Conditional logistic regression and allelic combination analyses suggested that the functional IRF7 SNP rs1131665 is the most likely causal variant. Conclusions The results show that variation in the IRF7 genomic region is associated with the presence of ACA in patients with SSc, supporting other evidence that this locus represents a common risk factor for autoantibody production in autoimmune diseases.
Journal Article
Impact of human-associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131
2018
There is growing concern about the spreading of human microorganisms in relatively untouched ecosystems such as the Antarctic region. For this reason, three pinniped species (
Leptonychotes weddellii
,
Mirounga leonina
and
Arctocephalus gazella
) from the west coast of the Antartic Peninsula were analysed for the presence of
Escherichia
spp. with the recovery of 158
E
.
coli
and three
E
.
albertii
isolates. From those, 23 harboured different
eae
variants (α1, β1, β2, ε1, θ1, κ, ο), including a
bfpA
-positive isolate (O49:H10-A-ST206,
eae
-k) classified as typical enteropathogenic
E
.
coli
. Noteworthy, 62 of the 158
E
.
coli
isolates (39.2%) exhibited the ExPEC status and 27 (17.1%) belonged to sequence types (ST) frequently occurring among urinary/bacteremia ExPEC clones: ST12, ST73, ST95, ST131 and ST141. We found similarities >85% within the PFGE-macrorrestriction profiles of pinniped and human clinic O2:H6-B2-ST141 and O16:H5/O25b:H4-B2-ST131 isolates. The
in silico
analysis of ST131 Cplx genomes from the three pinnipeds (five O25:H4-ST131/PST43-
fimH
22-virotype D; one O16:H5-ST131/PST506-
fimH
41; one O25:H4-ST6252/PST9-
fimH
22-virotype D1) identified IncF and IncI1 plasmids and revealed high core-genome similarities between pinniped and human isolates (
H
22 and
H
41 subclones). This is the first study to demonstrate the worrisome presence of human-associated
E
.
coli
clonal groups, including ST131, in Antarctic pinnipeds.
Journal Article
The Use of Led Technology and Biomass to Power Public Lighting in a Local Context: The Case of Baeza (Spain)
by
Peña-García, Antonio
,
Cortés-García, Francisco J.
,
Molina-Moreno, Valentín
in
circular economy
,
energy efficiency
,
Lighting
2018
The impact of public lighting on consumed energy, financial cost, use of raw materials, and the environment is a major concern nowadays. The high amounts of energy needed to satisfy the increasing demands of cities around the world has led researchers to look for alternatives to classical fossil sources, with low implementation in public lighting up to date. In this context, circular economy (CE) proposes a new perspective of engineering based on smart design for the future life of products where even wastes have an added value as technological nutrients for other applications. A convergent consideration of CE and the urgent necessity of more sustainable public lighting leads to this proposal. The ad hoc use of a local biomass plant for powering the public lighting of one small city is considered, and important conclusions reinforcing the link between lighting and CE are presented.
Journal Article
Nurse home visits with or without alert buttons versus usual care in the frail elderly: a randomized controlled trial
by
Juarez-Cedillo
,
Espinel Bermudez, Claudia
,
Sanchez-Garcia
in
Activities of Daily Living
,
Aged
,
Aged, 80 and over
2013
To assess whether an intervention based on nurse home visits including alert buttons (NV+AB) is effective in reducing frailty compared to nurse home visits alone (NV-only) and usual care (control group) for older adults.
Unblinded, randomized, controlled trial.
Insured population covered by the Mexican Social Security Institute living in the city of Ensenada, Baja California, Mexico.
Patients were aged over 60 years with a frailty index score higher than 0.14.
After screening and informed consent, participants were allocated randomly to the control, NV+AB, or NV-only groups.
The primary outcome was the frailty score 9 months later. Quality of life, depression, comorbidities, health status, and health service utilization were also considered.
The framing sample included 819 patients. Of those, 591 were not located because they did not have a landline/telephone (341 patients), they had died (107), they were ill (50), or they were not currently living in the city (28). A screening interview was applied to 228 participants, and 57 had a score ≤0.14, 171 had ≥0.14, and 16 refused to complete the baseline questionnaire. A home visit was scheduled for 155 patients. However, 22 did not complete the baseline questionnaire. The final 133 subjects were randomized into the NV+AB (n = 45), NV-only (n = 44), and control (n = 44) groups. There were no statistically significant differences in the baseline characteristics of the groups. The mean age overall was 76.3 years (standard deviation 4.7) and 45% were men. At the baseline, 61.65% were classified as frail. At end of follow-up the adjusted prevalence of frailty in NV+AB group was 23.3% versus 58.3% in the control group.
An intervention based on NV+AB seems to have a positive effect on frailty scores.
Journal Article