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result(s) for
"Gasthuber, Martin"
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Real-time data processing for serial crystallography experiments
by
Henkel, Alessandra
,
Klopprogge, Bjarne
,
White, Thomas
in
Computation
,
Crystallography
,
Data processing
2025
We report the use of streaming data interfaces to perform fully online data processing for serial crystallography experiments, without storing intermediate data on disk. The system produces Bragg reflection intensity measurements suitable for scaling and merging, with a latency of less than 1 s per frame. Our system uses the CrystFEL software in combination with the ASAP::O data framework. In a series of user experiments at PETRA III, frames from a 16 megapixel Dectris EIGER2 X detector were searched for peaks, indexed and integrated at the maximum full-frame readout speed of 133 frames per second. The computational resources required depend on various factors, most significantly the fraction of non-blank frames (`hits'). The average single-thread processing time per frame was 242 ms for blank frames and 455 ms for hits, meaning that a single 96-core computing node was sufficient to keep up with the data, with ample headroom for unexpected throughput reductions. Further significant improvements are expected, for example by binning pixel intensities together to reduce the pixel count. We discuss the implications of real-time data processing on the `data deluge' problem from recent and future photon-science experiments, in particular on calibration requirements, computing access patterns and the need for the preservation of raw data.
Journal Article
Evolution and Broadening of the National Analysis Facility at DESY
by
Flemming, Martin
,
Bujack, Stefan
,
Sternberger, Sven
in
Distributed processing
,
Evolution
,
Storage systems
2025
The National analysis Facility (NAF) at DESY has constantly been evolving since its inception in 2007. Starting as a distributed computing platform between the DESY sites in Hamburg and Zeuthen, it has been serving the German HEP users as well as international collaborators since as a experimentagnostic compute and data infrastructure. The technical implementations NAF have changed in a number of evolutionary steps over time to adapt to the changing requirements by its users as well as to the always changing technological landscape. While technological details have changed, central points to the NAF have been constant like data rather than plain compute being pivotal or like user support as a cornerstone. Followingly, we will describe the recent developments and updates in the NAF ecosystem. On the user side, further experiments have chosen the NAF as their computing platform and have build up their analyses pipelines ontop the NAF. On the operational side, effort has been made to further harden the security and increase monitoring and integration between compute and storage systems as complementary components of the NAF.
Journal Article
Serving Photon Science and HEP at the same facility
2025
DESY (Deutsches Elektronen-Synchrotron) has been a center of German high energy physics (HEP) research since 1959 with on-site experiments and theoretical research. Since the turn of the century, the research scope has evolved beyond HEP. With the PETRA-III or FLASH facilities on site and the collaboration within the European XFEL, DESY has become a major photon science laboratory as well. To be able to serve the computing and data taking needs for these various user groups and scientific backgrounds, DESY IT has developed and deployed data acquisition, storage and computing solutions.
Journal Article
Trends in computing technologies and markets: The HEPiX TechWatch WG
by
Meinhard, Helge
,
Hollowell, Christopher
,
Michelotto, Michele
in
Accelerators
,
Data centers
,
Large Hadron Collider
2020
Driven by the need to carefully plan and optimise the resources for the next data taking periods of Big Science projects, such as CERN’s Large Hadron Collider and others, sites started a common activity, the HEPiX Technology Watch Working Group, tasked with tracking the evolution of technologies and markets of concern to the data centres. The talk will give an overview of general and semiconductor markets, server markets, CPUs and accelerators, memories, storage and networks; it will highlight important areas of uncertainties and risks.
Journal Article
Beyond HEP: Photon and accelerator science computing infrastructure at DESY
by
Flemming, Martin
,
Bujack, Stefan
,
Sternberger, Sven
in
Accelerators
,
Changing environments
,
Cloud computing
2020
DESY is one of the largest accelerator laboratories in Europe. It develops and operates state of the art accelerators for fundamental science in the areas of high energy physics, photon science and accelerator development. While for decades high energy physics (HEP) has been the most prominent user of the DESY compute, storage and network infrastructure, various scientific areas as science with photons and accelerator development have caught up and are now dominating the demands on the DESY infrastructure resources, with significant consequences for the IT resource provisioning. In this contribution, we will present an overview of the computational, storage and network resources covering the various physics communities on site. Ranging from high-throughput computing (HTC) batch-like offline processing in the Grid and the interactive user analyses resources in the National Analysis Factory (NAF) for the HEP community, to the computing needs of accelerator development or of photon sciences such as PETRA III or the European XFEL. Since DESY is involved in these experiments and their data taking, their requirements include fast low-latency online processing for data taking and calibration as well as offline processing, thus high-performance computing (HPC) workloads, that are run on the dedicated Maxwell HPC cluster. As all communities face significant challenges due to changing environments and increasing data rates in the following years, we will discuss how this will reflect in necessary changes to the computing and storage infrastructures. We will present DESY compute cloud and container orchestration plans as a basis for infrastructure and platform services. We will show examples of Jupyter notebooks for small scale interactive analysis, as well as its integration into large scale resources such as batch systems or Spark clusters. To overcome the fragmentation of the various resources for all scientific communities at DESY, we explore how to integrate them into a seamless user experience in an Interdisciplinary Data Analysis Facility .
Journal Article
HNSciCloud - Overview and technical Challenges
2017
HEP is only one of many sciences with sharply increasing compute requirements that cannot be met by profiting from Moore's law alone. Commercial clouds potentially allow for realising larger economies of scale. While some small-scale experience requiring dedicated effort has been collected, public cloud resources have not been integrated yet with the standard workflows of science organisations in their private data centres; in addition, European science has not ramped up to significant scale yet. The HELIX NEBULA Science Cloud project - HNSciCloud, partly funded by the European Commission, addresses these points. Ten organisations under CERN's leadership, covering particle physics, bioinformatics, photon science and other sciences, have joined to procure public cloud resources as well as dedicated development efforts towards this integration. The HNSciCloud project faces the challenge to accelerate developments performed by the selected commercial providers. In order to guarantee cost efficient usage of IaaS resources across a wide range of scientific communities, the technical requirements had to be carefully constructed. With respect to current IaaS offerings, dataintensive science is the biggest challenge; other points that need to be addressed concern identity federations, network connectivity and how to match business practices of large IaaS providers with those of public research organisations. In the first section, this paper will give an overview of the project and explain the findings so far. The last section will explain the key points of the technical requirements and present first results of the experience of the procurers with the services in comparison to their'on-premise' infrastructure.
Journal Article
Resource-aware research on Universe and Matter: call-to-action in digital transformation
2024
Given the urgency to reduce fossil fuel energy production to make climate tipping points less likely, we call for resource-aware knowledge gain in the research areas on Universe and Matter with emphasis on the digital transformation. A portfolio of measures is described in detail and then summarized according to the timescales required for their implementation. The measures will both contribute to sustainable research and accelerate scientific progress through increased awareness of resource usage.
Journal Article
Online & Offline data storage and data processing at the European XFEL facility
2017
For the upcoming experiments at the European XFEL light source facility, a new online and offline data processing and storage infrastructure is currently being built and verified. Based on the experience of the system being developed for the Petra III light source at DESY, presented at the last CHEP conference, we further develop the system to cope with the much higher volumes and rates ( 50GB/sec) together with a more complex data analysis and infrastructure conditions (i.e. long range InfiniBand connections). This work will be carried out in collaboration of DESY/IT, European XFEL and technology support from IBM/Research. This presentation will shortly wrap up the experience of 1 year runtime of the PetraIII ([3]) system, continue with a short description of the challenges for the European XFEL ([2]) experiments and the main section, showing the proposed system for online and offline with initial result from real implementation (HW & SW). This will cover the selected cluster filesystem GPFS ([5]) including Quality of Service (QOS), extensive use of flash based subsystems and other new and unique features this architecture will benefit from.
Journal Article
Experience with HEP analysis on mounted filesystems
2012
We present results on different approaches on mounted filesystems in use or under investigation at DESY. dCache, established since long as a storage system for physics data has implemented the NFS v4.1/pNFS protocol. New performance results will be shown with the most current version of the dCache server. In addition to the native usage of the mounted filesystem in a LAN environment, the results are given for the performance of the dCache NFS v4.1/pNFS in WAN case. Several commercial vendors are currently in alpha or beta phase of adding the NFS v4.1/pNFS protocol to their storage appliances. We will test some of these vendor solutions for their readiness for HEP analysis. DESY has recently purchased an IBM Sonas system. We will present the result of a thorough performance evaluation using the native protocols NFS (v3 or v4) and GPFS. As the emphasis is on the usability for end user analysis, we will use latest ROOT versions and current end user analysis code for benchmark scenarios.
Journal Article
Resource-aware Research on Universe and Matter: Call-to-Action in Digital Transformation
2023
Given the urgency to reduce fossil fuel energy production to make climate tipping points less likely, we call for resource-aware knowledge gain in the research areas on Universe and Matter with emphasis on the digital transformation. A portfolio of measures is described in detail and then summarized according to the timescales required for their implementation. The measures will both contribute to sustainable research and accelerate scientific progress through increased awareness of resource usage. This work is based on a three-days workshop on sustainability in digital transformation held in May 2023.