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"Ge, Lili"
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Disulfide bond-related gene signature development for bladder cancer prognosis prediction and immune microenvironment characterization
2025
Bladder cancer is the fourth most common malignant tumor in men, with limited therapeutic biomarkers and heterogeneous responses to immunotherapy. Disulfide bond-driven cell death has emerged as a critical regulator of tumor progression and immune microenvironment remodeling. By integrating data from TCGA and GEO cohorts, we developed a Disulfide-Related Prognostic Signature (DRPS) using ten machine learning algorithms. Single-cell RNA sequencing (scRNA-seq) elucidated the cell subtype-specific expression patterns of disulfide bond regulatory genes, while immune microenvironment and drug sensitivity analyses validated its clinical translational potential. qRT-PCR experiments confirmed differential expression patterns of core genes in bladder cancer cell lines. The DRPS model, optimized by the StepCox[backward] algorithm, demonstrated robust prognostic accuracy across four validation cohorts (mean C-index = 0.658). High-risk patients exhibited an enhanced immunosuppressive microenvironment characterized by infiltrated activated cancer-associated fibroblasts, upregulated APC co-inhibition pathways, and elevated immune checkpoint expression. Notably, high DRPS scores were associated with primary resistance to immunotherapy but showed increased sensitivity to anti-tumor agents such as Elephantine and Leflunomide. This study establishes a novel DRPS that serves as a predictive indicator for bladder cancer prognosis and pan-cancer immunotherapy efficacy.
Journal Article
CircRNA_0079586 and circRNA_RanGAP1 are involved in the pathogenesis of intracranial aneurysms rupture by regulating the expression of MPO
Several circRNAs have been reported to be dysregulated in human endothelial cells through sponging miRNAs. Previous reports demonstrated that MPO not only contributed to the formation and rupture of cerebral aneurysm but was also correlated with the degenerative remodeling predisposition to saccular intracranial aneurysm wall rupture, although its underlying mechanisms remain to be explored. Microarray screening was performed to compare the differential expression of circRNAs in the endothelial cells collected from UIAs and RIAs patients. Luciferase assays were used to explore the regulatory relationship between circRNAs and miRNAs, and between miRNAs and their target genes. Microarray screening analysis found a batch of up-regulated circRNAs in the endothelial cells harvested from RIAs patients, including circRNA-0079586 and circRNA-RanGAP1. Luciferase assays revealed the suppressive role of miR-183-5p/miR-877-3p in the expression of circRNA-0079586/circRNA-RanGAP1/MPO. And the expression of circRNA-0079586 and circRNA-RanGAP1 was respectively suppressed by the overexpression of miR-183-5p and miR-877-3p. And both the transfection of miR-183-5p and miR-877-3p mimics suppressed the relative expression level of MPO mRNA. The expression of circRNA-0079586, circRNA-RanGAP1 and MPO was significantly activated in the endothelial cells collected from RIAs patients when compared with UIAs patients, whereas the expression of miR-183-5p and miR-877-3p was remarkably suppressed in the endothelial cells collected from RIAs patients when compared with UIAs patients. We further altered the expression of circRNA-0079586 and circRNA-RanGAP1 using siRNA and overexpression in HUVECS, and the expression of circRNA-0079586 and circRNA-RanGAP1 was significantly and negatively correlated with the expression of miR-183-5p and miR-877-3p, but positively correlated with the expression of MPO under different conditions. In this study, we established two MPO-modulating signaling pathways of circRNA_0079586/miR-183-5p/MPO and circRNA_RanGAP1/miR-877-3p/MPO. These two signaling pathways are involved in the pathogenesis of intracranial aneurysms rupture.
Journal Article
Effect of vitamin D supplementation on body composition, lipid profile, and glycemic indices in patients with obesity-associated metabolic syndrome: a systematic review and meta-analysis
2025
Background
Vitamin D deficiency is common among individuals with obesity and metabolic disorders. Evidence on its effect on metabolic markers remains inconclusive. This systematic review and meta-analysis aimed to evaluate the impact of vitamin D supplementation on lipid profile, glycemic control, and anthropometric indices.
Methods
A comprehensive search of PubMed, Embase, Cochrane Library, Web of Science, and China Knowledge Network was conducted from inception to May 2024. Randomized controlled trials (RCTs) evaluating oral vitamin D supplementation in adults with overweight, obesity, or metabolic disorders were included. Weighted mean differences (WMDs) and 95% confidence intervals (CIs) were calculated using a random-effects model.
Results
Twenty-five RCTs (30 arms) were included. Overall, vitamin D supplementation did not significantly affect triglycerides (TG), total cholesterol (TC), HDL-C, LDL-C, fasting plasma glucose (FPG), insulin, HOMA-IR, HbA1c, waist circumference (WC), or body weight (
p
< 0.05). Subgroup analyses showed significant effects in certain populations, such as increased HDL-C in individuals with diabetes and elevated LDL-C in younger adults and males. A significant reduction in BMI was observed after adjusting for publication bias (
p
< 0.05). Heterogeneity varied across outcomes, and risk of bias was generally low, although some studies had unclear reporting.
Conclusion
Vitamin D supplementation has limited effects on metabolic and anthropometric markers in adults with obesity or related metabolic disorders. Certain subgroups may benefit, warranting further targeted research.
Journal Article
Combined use of CA125, neutrophil/lymphocyte ratio and platelet/lymphocyte ratio for the diagnosis of borderline and malignant epithelial ovarian tumors
2023
Background
The mortality rate of ovarian cancer ranks first among three common gynecological malignant tumors due to insidious onset and lack of effective early diagnosis methods. Borderline epithelial ovarian tumor (BEOT) is a type of low malignant potential tumor that is typically associated with better outcomes than ovarian cancer. However, BEOTs are easily confused with benign and malignant epithelial ovarian tumors (EOTs) due to similar clinical symptoms and lack of specific tumor biomarkers and imaging examinations. Notably, a small subset of BEOTs will transform into low-grade serous ovarian carcinoma with a poor prognosis. Therefore, searching for potential biomarkers that can be easily obtained and accurately identify malignant epithelial ovarian tumors (MEOTs) as well as BEOTs is essential for the clinician. Cancer antigen 125 (CA125) is a commonly used biomarker for the diagnosis of EOTs in the preoperative scenario but has low sensitivity and specificity
.
Nowadays, inflammatory biomarkers including inflammatory cell counts and derived ratios such as neutrophil/lymphocyte ratio (NLR) and platelet/lymphocyte ratio (PLR) have been proved to be associated with tumor progression and poor prognosis, and were considered to be the most economically potential surrogate biomarkers for various malignancies. The purpose of this study was to find appropriate combinations of inflammatory and tumor biomarkers to improve the diagnostic efficiency of EOTs, especially the BEOTs.
Results
CA125, NLR and PLR increased steadily among benign, borderline and malignant EOTs and tended to be higher in advanced (stage III-IV) and lymph node metastasis MEOT groups than in early stage (stage I-II) and non-lymph node metastasis MEOT groups. CA125, NLR and PLR could be used separately in the differentiation of EOTs but could not take into account both sensitivity and specificity. The combined use of CA125, NLR and PLR was evaluated to be more efficient, especially in the identification of BEOTs, with both high sensitivity and high specificity.
Conclusions
The levels of CA125, NLR and PLR were closely related to the nature of EOTs and malignant progression of MEOTs. The combination of CA125, NLR and PLR was more accurate in identifying the nature of EOTs than either alone or double combination, especially for BEOTs.
Journal Article
Plasma circRNA microarray profiling identifies novel circRNA biomarkers for the diagnosis of ovarian cancer
2022
Background
Circular RNA (circRNA), a class of RNA with a covalent closed circular structure that widely existed in serum and plasma, has been considered an ideal liquid biopsy marker in many diseases. In this study, we employed microarray and qRT-PCR to evaluate the potential circulating circRNAs with diagnostic efficacy in ovarian cancer.
Methods
We used microarray to explore the circRNA expression profile in ovarian cancer patients’ plasma and quantitative real-time (qRT)-PCR approach to assessing the candidate circRNA’s expression. Then the receiver operating characteristic (ROC) curve was employed to analyze the diagnostic values of candidate circRNAs. The diagnostic model circCOMBO was a combination of hsa_circ_0003972 and hsa_circ_0007288 built by binary logistic regression. Then bioinformatic tools were used to predict their potential mechanisms.
Results
Hsa_circ_0003972 and hsa_circ_0007288 were downregulated in ovarian cancer patients’ plasma, tissues, and cell lines, comparing with the controls. Hsa_circ_0003972 and hsa_circ_0007288 exhibited diagnostic values with the Area Under Curve (AUC) of 0.724 and 0.790, respectively. circCOMBO showed a better diagnostic utility (AUC: 0.781), while the combination of circCOMBO and carbohydrate antigen 125 (CA125) showed the highest diagnostic value (AUC: 0.923). Furthermore, the higher expression level of hsa_circ_0007288 in both plasma and ovarian cancer tissues was associated with lower lymph node metastasis potential in ovarian cancer.
Conclusions
Our results revealed that hsa_circ_0003972 and hsa_circ_0007288 may serve as novel circulating biomarkers for ovarian cancer diagnosis.
Journal Article
hsa_circ_0020093 suppresses ovarian cancer progression by modulating LRPPRC activity and miR-107/LATS2 signaling
2024
A substantive body of evidence has demonstrated the significant roles of circular RNA (circRNA) in cancer. However, the contribution of dysregulated circRNAs to ovarian cancer (OC) remains elusive. We aim to elucidate the critical roles and mechanisms of hsa_circ_0020093, which was demonstrated to be downregulated in OC tissues in our previous study. In this study, we confirmed the decreased expression of hsa_circ_0020093 in OC tissues and cell lines and demonstrated the negative correlation between its expression and FIGO stage, abdominal implantation and CA125 level of OC patients. Through gain and loss of function studies, we confirmed the inhibitory role of hsa_circ_0020093 in ovarian tumor growth in vitro and in vivo
.
Mechanistically, based on the peri-nuclear accumulation of hsa_circ_0020093, we discovered the interaction between hsa_circ_0020093 and the mitochondrial protein LRPPRC by RNA pull-down, mass spectrometry, RNA Binding Protein Immunoprecipitation. As a result, qRT-PCR and transmission electron microscopy results showed that the mitochondria mRNA expression and mitochondria abundance were decreased upon hsa_circ_0020093-overexpression. Meanwhile, we also unearthed the hsa_circ_0020093/miR-107/LATS2 axis in OC according to RNA-sequencing, RIP and luciferase reporter assay data. Furthermore, LRPPRC and LATS2 are both reported as the upstream regulators of YAP, our study also studied the crosstalk between hsa_circ_0020093, LRPPRC and miR-107/LATS2, and unearthed the up-regulation of phosphorylated YAP in hsa_circ_0020093-overexpressing OC cells and xenograft tumors. Collectively, our study indicated the novel mechanism of hsa_circ_0020093 in suppressing OC progression through both hsa_circ_0020093/LRPPRC and hsa_circ_0020093/miR-107/LATS2 axes, providing a potential therapeutic target for OC patients.
Journal Article
In situ synthesis of CdS/ZnS composite nanoparticles from ZIF-8 for visible light disposal of Cr(VI)
2021
Zeolitic Imidazolate Framework (ZIF-8) micropolyhedra were employed as a raw material for the synthesis of fine cadmium sulfide/zinc sulfide (CdS/ZnS) composite nanoparticle. The structure and optical properties of the composite nanoparticle were investigated and the results suggested that the introduction of cadmium nitrate tetrahydrate led to the decomposition of ZIF-8 polyhedra. The CdS/ZnS composite nanoparticle was selected as catalyst for the photo-reduction of Cr(VI) ion under visible light. The catalytic data indicated that the fine CdS/ZnS composite nanoparticle displayed an excellent performance and good reusability for the reduction of Cr(VI). In addition, the influence of the dosage of the catalyst, the concentration of Cr(VI) as well as the pH on the catalytic activity was investigated. Finally, the catalytic reaction mechanism was studied to illustrate the possible reaction process by adding the radical scavengers in the reaction solution and Electron Spin-resonance Spectroscopy. It was suggested that the advantage of the fine composite nanoparticles facilitated the exposure to Cr(VI) ions and prevent the aggregation of CdS nanoparticles in the composite structure. Besides, the presence of ZnS in the composite could well prevent the combination of the electrons and holes generated from CdS.
The CdS/ZnS composite nanoparticle synthesized from ZIF-8 demonstrated a robust photo-catalytic activity for the reduction of Cr(VI).
Highlights
CdS/ZnS nanoparticle was synthesized from ZIF-8.
It displayed a robust catalytic ability and reusability for Cr(VI) reduction.
An efficient separation of electrons/holes was observed.
Journal Article
A New Risk Index Combining d-Dimer, Fibrinogen, HE4, and CA199 Differentiates Suspecting Endometrial Cancer From Patients With Abnormal Vaginal Bleeding or Discharge
2020
Purpose:
To establish an efficient new risk index for screening patients with endometrial cancer from patients with abnormal vaginal bleeding or discharge.
Method:
A total of 254 patients with abnormal vaginal bleeding or discharge were included in this study. Several candidate markers, including HE4, CA125, CA199, CA153, AFP, CEA, d-dimer, and fibrinogen, were employed. A new risk index for endometrial cancer screening was established by binary logistic regression. The diagnostic value of the candidate markers and the new risk index were assessed by a receiver operating characteristic curve, sensitivity, and specificity.
Results:
The most valuable diagnostic indicator for endometrial cancer was HE4, followed by d-dimer and then fibrinogen (area under the receiver operating characteristic curve: HE4 = 0.794, d-dimer = 0.717, fibrinogen = 0.690). The new risk index was superior to a single application of markers and a widely used combination (HE4 and CA125). At the ideal cutoff level, the sensitivity and specificity were 91.34% and 70.08%, respectively. In addition, only patients without organic disease served as controls, which further increase its performance (area under the receiver operating characteristic curve = 0.932, sensitivity = 94.49%, and specificity = 77.42%).
Conclusions:
The new risk index combining HE4, d-dimer, fibrinogen, and CA199 was the ideal combination for the screening of endometrial cancer. As a simple, rapid, nondestructive detection method, the new risk index is worth promotion in clinical practice, especially in primary medical institutions.
Journal Article
Genomic and phylodynamic analysis of sapoviruses isolated in Henan Province, China
2021
In this study, we determined the near-complete and partial genome sequences of ten SaV isolates. Phylogenetic analysis based on full-length VP1 and RdRp nucleotide sequences indicated that nine isolates were of GI.1 and one was GII.3. Evolutionary dynamics analysis indicated that GI.1 and GII.3 SaVs evolved at different rates, the latter evolving more rapidly. Cluster analysis indicated that distantly related GI.1 SaVs were more similar in their amino acid compositions than were GII.3 SaVs. The data provided in this study may facilitate studies on SaV genomic diversity and epidemiological patterns in China and worldwide.
Journal Article
Innovative multiphase ultrasonic-assisted method for high-purity, stable, and cost-effective copper nanowire synthesis
by
Ge, Lili
,
Li, Shuxin
,
Yang, Deren
in
Biomaterials
,
Characterization and Evaluation of Materials
,
Chemistry and Materials Science
2024
The synthesis of copper nanowires (CuNWs) using modified polyols with hexadecylamine or octadecylamine as capping agents, known for their ease of operation, rapid reaction, and suitability for mass production, often encounters challenges such as the presence of copper particles, numerous copper nanorods, difficulty in purifying organic compounds, and air instability as by-products. In addressing these issues, this study introduces an innovative multiphase ultrasonic-assisted separation method. By utilizing ultrasound to accelerate the dissolution of hexadecylamine and facilitate the separation movement of CuNWs and by-products in hydrophilic and hydrophobic phases, the aim of achieving high purification of CuNWs is realized. Through the introduction of an ultra-thin hexadecylamine layer (~ 3.5 nm) on the surface of CuNWs and leveraging the active adsorption of silver seed crystals, combined with the control CuNWs reaction concentration, silver-coated CuNWs with a dense and uniform surface thickness of 12–15 nm are obtained. By enhancing purity, stability, and cost-effectiveness, this research represents a significant advancement in the field of one-dimensional nanowires and their devices.
Journal Article