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The Neotoma Paleoecology Database is a community-curated data resource that supports interdisciplinary global change research by enabling broad-scale studies of taxon and community diversity, distributions, and dynamics during the large environmental changes of the past. By consolidating many kinds of data into a common repository, Neotoma lowers costs of paleodata management, makes paleoecological data openly available, and offers a high-quality, curated resource. Neotoma’s distributed scientific governance model is flexible and scalable, with many open pathways for participation by new members, data contributors, stewards, and research communities. The Neotoma data model supports, or can be extended to support, any kind of paleoecological or paleoenvironmental data from sedimentary archives. Data additions to Neotoma are growing and now include >3.8 million observations, >17,000 datasets, and >9200 sites. Dataset types currently include fossil pollen, vertebrates, diatoms, ostracodes, macroinvertebrates, plant macrofossils, insects, testate amoebae, geochronological data, and the recently added organic biomarkers, stable isotopes, and specimen-level data. Multiple avenues exist to obtain Neotoma data, including the Explorer map-based interface, an application programming interface, the neotoma R package, and digital object identifiers. As the volume and variety of scientific data grow, community-curated data resources such as Neotoma have become foundational infrastructure for big data science.

Relict woolly mammoth (Mammuthus primigenius) populations survived on several small Beringian islands for thousands of years after mainland populations went extinct. Here we present multiproxy paleoenvironmental records to investigate the timing, causes, and consequences of mammoth disappearance from St. Paul Island, Alaska. Five independent indicators of extinction show that mammoths survived on St. Paul until 5,600 ± 100 y ago. Vegetation composition remained stable during the extinction window, and there is no evidence of human presence on the island before 1787 CE, suggesting that these factors were not extinction drivers. Instead, the extinction coincided with declining freshwater resources and drier climates between 7,850 and 5,600 y ago, as inferred from sedimentary magnetic susceptibility, oxygen isotopes, and diatom and cladoceran assemblages in a sediment core from a freshwater lake on the island, and stable nitrogen isotopes from mammoth remains. Contrary to other extinction models for the St. Paul mammoth population, this evidence indicates that this mammoth population died out because of the synergistic effects of shrinking island area and freshwater scarcity caused by rising sea levels and regional climate change. Degradation of water quality by intensified mammoth activity around the lake likely exacerbated the situation. The St. Paul mammoth demise is now one of the best-dated prehistoric extinctions, highlighting freshwater limitation as an overlooked extinction driver and underscoring the vulnerability of small island populations to environmental change, even in the absence of human influence.

Earth has experienced five major extinction events in the past 450 million years. Many scientists suggest we are now witnessing a sixth, driven by human impacts. However, it has been difficult to quantify the real extent of the current extinction episode, either for a given taxonomic group at the continental scale or for the worldwide biota, largely because comparisons of pre-anthropogenic and anthropogenic biodiversity baselines have been unavailable. Here, we compute those baselines for mammals of temperate North America, using a sampling-standardized rich fossil record to reconstruct species-area relationships for a series of time slices ranging from 30 million to 500 years ago. We show that shortly after humans first arrived in North America, mammalian diversity dropped to become at least 15%-42% too low compared to the \"normal\" diversity baseline that had existed for millions of years. While the Holocene reduction in North American mammal diversity has long been recognized qualitatively, our results provide a quantitative measure that clarifies how significant the diversity reduction actually was. If mass extinctions are defined as loss of at least 75% of species on a global scale, our data suggest that North American mammals had already progressed one-fifth to more than halfway (depending on biogeographic province) towards that benchmark, even before industrialized society began to affect them. Data currently are not available to make similar quantitative estimates for other continents, but qualitative declines in Holocene mammal diversity are also widely recognized in South America, Eurasia, and Australia. Extending our methodology to mammals in these areas, as well as to other taxa where possible, would provide a reasonable way to assess the magnitude of global extinction, the biodiversity impact of extinctions of currently threatened species, and the efficacy of conservation efforts into the future.

On St. Paul Island, a remnant of the Bering Land Bridge, woolly mammoths persisted until 5,600 yr BP with no known predators or competitors, providing a natural system for studying hypothesized environmental drivers of extinction. These include overheating due to rising temperatures, starvation, and drought. Here, we test these hypotheses using Niche Mapper and LPJ-GUESS to mechanistically estimate mammoth metabolic rates and dietary and freshwater requirements and, from these, estimate variations in island carrying capacity on St. Paul for the last 17,000 yr. Population carrying capacity may have been several hundred individuals at the time of initial isolation from the mainland. Adult mammoths could have fasted for two to three months, indicating a necessary ability to access snow-buried forage. During the Holocene, vegetation net primary productivity increased, but shrinking island area overrode increased net primary productivity (NPP), lowering carrying capacity to ~100 individuals. NPP and freshwater availability alternated as critical limiting factors for this island population during the environmental changes of the late Pleistocene and Holocene. Only two or three individuals could have been sustained by the freshwater surplus in crater lakes (up to 18 individuals under the most optimistic parameter sensitivity experiments), suggesting that the St. Paul mammoth population was highly dependent on coastal freshwater sources. The simulations are consistent with the available proxy data, while highlighting the need to retrieve new paleohydrological proxy records from the coastal lagoons to test model predictions. More broadly, these findings reinforce the vulnerability of island megaherbivore populations to resource limitation and extinction.

Late Quaternary small mammal faunas document ecological change and biotic responses to past climates but are especially rare in some geographic regions such as the North American Great Plains. Don’s Gooseberry Pit (DGP), a cave in the southeastern Black Hills of South Dakota, USA, contains a fauna documenting small mammal community composition shifts and environmental change over the last 18,000 yr in this data-depauperate region. Although the stratigraphy of the cave appears to be primary, disparate radiocarbon dates indicate that there is mixing of the fauna throughout. A paleoenvironmental signal consistent with regional reconstructions still emerges from an analysis of the stratigraphically ordered fauna. Dated taxa from DGP record the ecological replacement of Dicrostonyx by Myodes and later Microtus in response to late Quaternary warming. Individually dated specimens of Dicrostonyx richardsoni confirm late survival of this cold-adapted taxon in the Black Hills (17,083 cal yr BP). Our results indicate that a coarse paleoecological signal is present in DGP, and that the Black Hills served as a “high-altitude” refugium for cold-adapted species following the end of the last glacial period.

Taphonomic factors may significantly alter faunal assemblages at varying scales. An exceptional record of late Holocene (<4000 yr old) mammal faunas establishes a firm baseline to investigate the effects of scale on taphonomy. Our sample contains 73 sites within four contiguous states (North Dakota, South Dakota, Iowa, and Illinois, USA) that transect a strong modern and late Holocene environmental gradient, the prairie-forest ecotone. We performed detrended correspondence (DCA) and non-metric multidimensional scaling (NMDS) analyses. Both DCA and NMDS analyses of the data sets produced virtually the same results, and both failed to reveal the known ecological gradient within each state. However, both DCA and NMDS analyses of the unfiltered multistate data set across the entire gradient clearly reflect an environmental, rather than taphonomic, signal. DCA tended to provide better separation of some clusters than did NMDS in most of the analyses. We conclude that a robust mammal data set collected across a strong environmental gradient will document species turnover without the removal of taphonomic factors. In other words, taphonomy exhibits varying scale-dependent effects.

Analyses of fossil mammal faunas from 2945 localities in the United States demonstrate that the geographic ranges of individual species shifted at different times, in different directions, and at different rates in response to late Quatemary environmental fluctuations. The geographic pattern of faunal provinces was similar for the late Pleistocene and late Holocene, but differing environmental gradients resulted in dissimilar species composition for these biogeographic regions. Modern community patterns emerged only in the last few thousand years, and many late Pleistocene communities do not have modern analogs. Faunal heterogeneity was greater in the late Pleistocene.

Data, whether images, measurements, counts, occurrences, or character codings, are a cornerstone of vertebrate paleontology. Every published paper, master's thesis, and doctoral dissertation relies on these data to document patterns and processes in evolution, ecology, taphonomy, geography, geologic time, and functional morphology, to name just a few. In turn, the vertebrate paleontology community relies on published data in order to reproduce and verify others' work, as well as to expand upon published analyses in new ways without having to reconstitute data sets that have been used by earlier authors and to accurately preserve data for future generations of researchers. Here, we review several databases that are of interest to vertebrate paleontologists and strongly advocate for more deposition of basic research data in publicly accessible databases by vertebrate paleontologists.

Data, whether images, measurements, counts, occurrences, or character codings, are a cornerstone of vertebrate paleontology. Every published paper, master's thesis, and doctoral dissertation relies on these data to document patterns and processes in evolution, ecology, taphonomy, geography, geologic time, and functional morphology, to name just a few. In turn, the vertebrate paleontology community relies on published data in order to reproduce and verify others' work, as well as to expand upon published analyses in new ways without having to reconstitute data sets that have been used by earlier authors and to accurately preserve data for future generations of researchers. Here, we review several databases that are of interest to vertebrate paleontologists and strongly advocate for more deposition of basic research data in publicly accessible databases by vertebrate paleontologists.