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40 result(s) for "Gray, Jesse E."
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Resolving the Dust Bowl paradox of grassland responses to extreme drought
During the 1930s Dust Bowl drought in the central United States, species with the C₃ photosynthetic pathway expanded throughout C₄-dominated grasslands. This widespread increase in C₃ grasses during a decade of low rainfall and high temperatures is inconsistent with well-known traits of C₃ vs. C₄ pathways. Indeed, water use efficiency is generally lower, and photosynthesis is more sensitive to high temperatures in C₃ than C₄ species, consistent with the predominant distribution of C₃ grasslands in cooler environments and at higher latitudes globally. We experimentally imposed extreme drought for 4 y in mixed C₃/C₄ grasslands in Kansas and Wyoming and, similar to Dust Bowl observations, also documented three- to fivefold increases in C₃/C₄ biomass ratios. To explain these paradoxical responses, we first analyzed long-term climate records to show that under nominal conditions in the central United States, C₄ grasses dominate where precipitation and air temperature are strongly related (warmest months are wettest months). In contrast, C₃ grasses flourish where precipitation inputs are less strongly coupled to warm temperatures. We then show that during extreme drought years, precipitation–temperature relationships weaken, and the proportion of precipitation falling during cooler months increases. This shift in precipitation seasonality provides a mechanism for C₃ grasses to respond positively to multiyear drought, resolving the Dust Bowl paradox. Grasslands are globally important biomes and increasingly vulnerable to direct effects of climate extremes. Our findings highlight how extreme drought can indirectly alter precipitation seasonality and shift ecosystem phenology, affecting function in ways not predictable from key traits of C₃ and C₄ species.
Is a drought a drought in grasslands? Productivity responses to different types of drought
Drought, defined as a marked deficiency of precipitation relative to normal, occurs as periods of below-average precipitation or complete failure of precipitation inputs, and can be limited to a single season or prolonged over multiple years. Grasslands are typically quite sensitive to drought, but there can be substantial variability in the magnitude of loss of ecosystem function. We hypothesized that differences in how drought occurs may contribute to this variability. In four native Great Plains grasslands (three C₄-and one C₃-dominated) spanning a ~ 500-mm precipitation gradient, we imposed drought for four consecutive years by (1) reducing each rainfall event by 66% during the growing season (chronic drought) or (2) completely excluding rainfall during a shorter portion of the growing season (intense drought). The drought treatments were similar in magnitude but differed in the following characteristics: event number, event size and length of dry periods. We observed consistent drought-induced reductions (28–37%) in aboveground net primary production (ANPP) only in the C₄-dominated grasslands. In general, intense drought reduced ANPP more than chronic drought, with little evidence that drought duration altered this pattern. Conversely, belowground net primary production (BNPP) was reduced by drought in all grasslands (32–64%), with BNPP reductions greater in intense vs. chronic drought treatments in the most mesic grassland. We conclude that grassland productivity responses to drought did not strongly differ between these two types of drought, but when differences existed, intense drought consistently reduced function more than chronic drought.
Defining codominance in plant communities
Species dominance and biodiversity in plant communities have received considerable attention and characterisation. However, species codominance, while often alleged, is seldom defined or quantified. Codominance is a common phenomenon and is likely to be an important driver of community structure, ecosystem function and the stability of both. Here we review the use of the term ‘codominance’ and find inconsistencies in its use, suggesting that the scientific community currently lacks a universal understanding of codominance. We address this issue by: (1) qualitatively defining codominance as mostly shared abundance that is distinctively isolated within a subset of a community, and (2) presenting a novel metric for quantifying the degree to which relative abundances are shared among a codominant subset of plant species, while also accounting for the remaining species within a plant community. Using both simulated and real-world data, we then demonstrate the process of applying the codominance metric to compare communities and to generate a quantitatively defensible subset of species to consider codominant within a community. We show that our metric effectively distinguishes the degree of codominance between four types of grassland ecosystems as well as simulated ecosystems with varying degrees of abundance sharing among community members. Overall, we make the case that increased research focusses on the conditions under which codominance occurs and the consequences for species coexistence, community structure and ecosystem function that would considerably advance the fields of community and ecosystem ecology.
A reality check for climate change experiments
Experiments are widely used in ecology, particularly for assessing global change impacts on ecosystem function. However, results from experiments often are inconsistent with observations made under natural conditions, suggesting the need for rigorous comparisons of experimental and observational studies. We conducted such a “reality check” for a grassland ecosystem by compiling results from nine independently conducted climate change experiments. Each experiment manipulated growing season precipitation (GSP) and measured responses in aboveground net primary production (ANPP). We compared results from experiments with long-term (33-yr) annual precipitation and ANPP records to ask if collectively (n = 44 experiment-years) experiments yielded estimates of ANPP, rain-use efficiency (RUE, grams per square meter ANPP per mm precipitation), and the relationship between GSP and ANPP comparable to observations. We found that mean ANPP and RUE from experiments did not deviate from observations. Experiments and observational data also yielded similar functional relationships between ANPP and GSP, but only within the range of historically observed GSP. Fewer experiments imposed extreme levels of GSP (outside the observed 33-yr record), but when these were included, they altered the GSP–ANPP relationship. This result underscores the need for more experiments imposing extreme precipitation levels to resolve how forecast changes in climate regimes will affect ecosystem function in the future.
Building Resilience in Dryland Ecosystems: A Climate Adaptation Strategy Menu for Pinyon–Juniper Woodlands
Pinyon–juniper (PJ) woodlands, one of the most extensive mature and old-growth woodland types in the Western United States, provide critical ecological, cultural, and economic benefits but face increasing threats from climate change, altered disturbance regimes, invasive species, and pests. We developed the PJ Woodland Climate Adaptation Management Menu, a decision support tool designed to guide adaptive, climate-informed management of PJ ecosystems, particularly within the Colorado Plateau ecoregion. The menu was created through an iterative, collaborative process involving literature review, integration of strategies from existing adaptation frameworks, and extensive input from scientists, land managers, and community partners during workshops and focus groups. The menu links specific, evidence-based approaches to each of six broad strategies, including soliciting community input, mitigating disturbance, enhancing and maintaining biodiversity, conserving ecotones, timing actions for optimal outcomes, and accepting climate-driven changes when appropriate. It is intended for use with the Adaptation Workbook to help managers connect local goals and climate vulnerabilities to tailored management tactics. Hypothetical scenarios demonstrate the menu’s application to contrasting PJ woodland conditions, from die-off events to old-growth maintenance. Lessons learned during development underscore the value of early stakeholder engagement, cross-sector collaboration, and balancing diverse ecological objectives. This menu offers a flexible, transferable framework to strengthen climate resilience in PJ woodlands and serves as a model that could improve adaptation planning in other dryland forest ecosystems.
Climate Change Impacts on Population Dynamics in Tallgrass Prairie: Implications for Species Codominance
Two grass species, Andropogon gerardii and Sorghastrum nutans, together account for the great majority of individuals, biomass, and possibly genetic diversity in plant communities of the tallgrass prairies of the Great Plains, US. As competitors with similar functional traits and what appears to be overlapping niches, it is not clear what mechanisms facilitate their co-dominance, but it may rely on the high variability of environmental conditions that characterize grassland ecosystems. Because these abundant grasses strongly influence plant community structure and ecosystem function, it is critical that we understand the factors influencing the population dynamics of these species, and how climate change might alter those relationships. We found an asynchrony in population dynamics in which A. gerardii begins each growing season at higher tiller densities, with attrition of tillers starting mid-season. Concurrent gains of S. nutans tillers results in A. gerardii becoming the less abundant by the end of most growing seasons. We hypothesized that this differentiation in tillering strategies causes each species to be vulnerable to unfavorable environmental conditions during different parts of the growing season, thus enabling their coexistence by preventing an inter-annually consistent competitive advantage of either species. We found that greater tiller density asynchrony was associated with higher population densities of S. nutans and of aggregate tiller densities of both species. Experimental increases in temperature and rainfall variability reduced population-level asynchrony while exacerbating population declines and overall community productivity, suggesting this mechanism of co-dominance may rely on current levels of environmental variability, and may be vulnerable to projected increases in that variability with climate change.
Partitioning of cancer therapeutics in nuclear condensates
The nucleus contains diverse phase-separated condensates that compartmentalize and concentrate biomolecules with distinct physicochemical properties. Here, we investigated whether condensates concentrate small-molecule cancer therapeutics such that their pharmacodynamic properties are altered. We found that antineoplastic drugs become concentrated in specific protein condensates in vitro and that this occurs through physicochemical properties independent of the drug target. This behavior was also observed in tumor cells, where drug partitioning influenced drug activity. Altering the properties of the condensate was found to affect the concentration and activity of drugs. These results suggest that selective partitioning and concentration of small molecules within condensates contributes to drug pharmacodynamics and that further understanding of this phenomenon may facilitate advances in disease therapy.
Widespread transcription at neuronal activity-regulated enhancers
We used genome-wide sequencing methods to study stimulus-dependent enhancer function in mouse cortical neurons. We identified ∼12,000 neuronal activity-regulated enhancers that are bound by the general transcriptional co-activator CBP in an activity-dependent manner. A function of CBP at enhancers may be to recruit RNA polymerase II (RNAPII), as we also observed activity-regulated RNAPII binding to thousands of enhancers. Notably, RNAPII at enhancers transcribes bi-directionally a novel class of enhancer RNAs (eRNAs) within enhancer domains defined by the presence of histone H3 monomethylated at lysine 4. The level of eRNA expression at neuronal enhancers positively correlates with the level of messenger RNA synthesis at nearby genes, suggesting that eRNA synthesis occurs specifically at enhancers that are actively engaged in promoting mRNA synthesis. These findings reveal that a widespread mechanism of enhancer activation involves RNAPII binding and eRNA synthesis. Activity-regulated enhancers Regulatory proteins bind non-coding DNA either close to a gene's mRNA transcription start site at a promoter, or further away on the genome at an enhancer. Enhancers act by helping to recruit the RNA polymerase to the promoter. Now a genome-wide sequencing study of more than 10,000 enhancers that respond to electrical activity in neurons shows that the regulatory process also brings the polymerase to the enhancers themselves, where it transcribes non-coding RNAs. This 'enhancer RNA' (eRNA) synthesis occurs only at enhancers actively engaged in promoting mRNA synthesis from a promoter. The results suggest that at least in the brain, enhancers play a more active 'promoter-like' role in regulating gene expression than previously appreciated. Regulatory proteins bind non-coding DNA either at promoters (near to a gene's transcription start site) or at enhancers (far away). Binding at enhancers helps to bring the transcription enzyme RNA polymerase to promoters. Here, studies of some 12,000 enhancers that respond to electrical activity in neurons show that binding to enhancers also brings the polymerase to the enhancers themselves, where it transcribes a novel class of non-coding RNAs. Enhancers may thus be more similar to promoters than hitherto appreciated.
High-performance organic pseudocapacitors via molecular contortion
Pseudocapacitors harness unique charge-storage mechanisms to enable high-capacity, rapidly cycling devices. Here we describe an organic system composed of perylene diimide and hexaazatrinaphthylene exhibiting a specific capacitance of 689 F g −1 at a rate of 0.5 A g −1 , stability over 50,000 cycles, and unprecedented performance at rates as high as 75 A g −1 . We incorporate the material into two-electrode devices for a practical demonstration of its potential in next-generation energy-storage systems. We identify the source of this exceptionally high rate charge storage as surface-mediated pseudocapacitance, through a combination of spectroscopic, computational and electrochemical measurements. By underscoring the importance of molecular contortion and complementary electronic attributes in the selection of molecular components, these results provide a general strategy for the creation of organic high-performance energy-storage materials. Pseudocapacitors exhibit charge-storage mechanisms leading to high-capacity and rapidly cycling devices. An organic system designed via molecular contortion is now shown to exhibit unprecedented electrochemical performance and stability.
Immune complex relay by subcapsular sinus macrophages and noncognate B cells drives antibody affinity maturation
Immune complexes are captured from lymph by subcapsular macrophages. Cyster and colleagues show that an intricate relay shuttles antigen into germinal centers to drive affinity maturation. Subcapsular sinus (SCS) macrophages capture antigens from lymph and present them intact for B cell encounter and follicular delivery. However, the properties of SCS macrophages are poorly defined. Here we show SCS macrophage development depended on lymphotoxin-α1β2, and the cells had low lysosomal enzyme expression and retained opsonized antigens on their surface. Intravital imaging revealed immune complexes moving along macrophage processes into the follicle. Moreover, noncognate B cells relayed antigen opsonized by newly produced antibodies from the subcapsular region to the germinal center, and affinity maturation was impaired when this transport process was disrupted. Thus, we characterize SCS macrophages as specialized antigen-presenting cells functioning at the apex of an antigen transport chain that promotes humoral immunity.