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94 result(s) for "Greenbaum, Alexandra"
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Field-Portable Microplastic Sensing in Aqueous Environments: A Perspective on Emerging Techniques
Microplastics (MPs) have been found in aqueous environments ranging from rural ponds and lakes to the deep ocean. Despite the ubiquity of MPs, our ability to characterize MPs in the environment is limited by the lack of technologies for rapidly and accurately identifying and quantifying MPs. Although standards exist for MP sample collection and preparation, methods of MP analysis vary considerably and produce data with a broad range of data content and quality. The need for extensive analysis-specific sample preparation in current technology approaches has hindered the emergence of a single technique which can operate on aqueous samples in the field, rather than on dried laboratory preparations. In this perspective, we consider MP measurement technologies with a focus on both their eventual field-deployability and their respective data products (e.g., MP particle count, size, and/or polymer type). We present preliminary demonstrations of several prospective MP measurement techniques, with an eye towards developing a solution or solutions that can transition from the laboratory to the field. Specifically, experimental results are presented from multiple prototype systems that measure various physical properties of MPs: pyrolysis-differential mobility spectroscopy, short-wave infrared imaging, aqueous Nile Red labeling and counting, acoustophoresis, ultrasound, impedance spectroscopy, and dielectrophoresis.
The Near Infrared Imager and Slitless Spectrograph for JWST. V. Kernel Phase Imaging and Data Analysis
Kernel phase imaging (KPI) enables the direct detection of substellar companions and circumstellar dust close to and below the classical (Rayleigh) diffraction limit. The high-Strehl full pupil images provided by the James Webb Space Telescope (JWST) are ideal for application of the KPI technique. We present a kernel phase analysis of JWST NIRISS full pupil images taken during the instrument commissioning and compare the performance to closely related NIRISS aperture masking interferometry (AMI) observations. For this purpose, we develop and make publicly available the custom Kpi3Pipeline data reduction pipeline enabling the extraction of kernel phase observables from JWST images. The extracted observables are saved into a new and versatile kernel phase FITS file data exchange format. Furthermore, we present our new and publicly available fouriever toolkit which can be used to search for companions and derive detection limits from KPI, AMI, and long-baseline interferometry observations while accounting for correlated uncertainties in the model fitting process. Among the four KPI targets that were observed during NIRISS instrument commissioning, we discover a low-contrast (∼1:5) close-in (∼1 λ / D ) companion candidate around CPD-66 562 and a new high-contrast (∼1:170) detection separated by ∼1.5 λ / D from 2MASS J062802.01-663738.0. The 5 σ companion detection limits around the other two targets reach ∼6.5 mag at ∼200 mas and ∼7 mag at ∼400 mas. Comparing these limits to those obtained from the NIRISS AMI commissioning observations, we find that KPI and AMI perform similar in the same amount of observing time. Due to its 5.6 times higher throughput if compared to AMI, KPI is beneficial for observing faint targets and superior to AMI at separations ≳325 mas. At very small separations (≲100 mas) and between ∼250 and 325 mas, AMI slightly outperforms KPI which suffers from increased photon noise from the core and the first Airy ring of the point-spread function.
The Near Infrared Imager and Slitless Spectrograph for the James Webb Space Telescope. IV. Aperture Masking Interferometry
The James Webb Space Telescope’s Near Infrared Imager and Slitless Spectrograph (JWST-NIRISS) flies a 7-hole non-redundant mask (NRM), the first such interferometer in space, operating at 3–5 μ m wavelengths, and a bright limit of ≃4 mag in W2. We describe the NIRISS Aperture Masking Interferometry (AMI) mode to help potential observers understand its underlying principles, present some sample science cases, explain its operational observing strategies, indicate how AMI proposals can be developed with data simulations, and how AMI data can be analyzed. We also present key results from commissioning AMI. Since the allied Kernel Phase Imaging (KPI) technique benefits from AMI operational strategies, we also cover NIRISS KPI methods and analysis techniques, including a new user-friendly KPI pipeline. The NIRISS KPI bright limit is ≃8 W2 (4.6 μ m) magnitudes. AMI NRM and KPI achieve an inner working angle of ∼70 mas, which is well inside the ∼400 mas NIRCam inner working angle for its circular occulter coronagraphs at comparable wavelengths.
BRCA1 deficiency in mature CD8+ T lymphocytes impairs antitumor immunity
Women with BRCA1 germline mutations have approximately an 80% lifetime chance of developing breast cancer. While the tumor suppressor function of BRCA1 in breast epithelium has been studied extensively, it is not clear whether BRCA1 deficiency in non-breast somatic cells also contribute to tumorigenesis. Here, we report that mouse Brca1 knockout (KO) in mature T lymphocytes compromises host antitumor immune response to transplanted syngeneic mouse mammary tumors. T cell adoptive transfer further corroborates CD8+ T cell-intrinsic impact of Brca1 KO on antitumor adaptive immunity. T cell-specific Brca1 KO mice exhibit fewer total CD8+, more exhausted, reduced cytotoxic, and reduced memory tumor-infiltrating T cell populations. Consistent with the preclinical data, cancer-free BRCA1 mutation-carrying women display lower abundance of circulating CD8+ lymphocytes than the age-matched control group. Thus, our findings support the notion that BRCA1 deficiency in adaptive immunity could contribute to BRCA1-related tumorigenesis. We also suggest that prophylactic boosting of adaptive immunity may reduce cancer incidence among at-risk women.
The Near Infrared Imager and Slitless Spectrograph for JWST. V. Kernel Phase Imaging and Data Analysis
Kernel phase imaging (KPI) enables the direct detection of substellar companions and circumstellar dust close to and below the classical (Rayleigh) diffraction limit. The high-Strehl full pupil images provided by the James Webb Space Telescope (JWST) are ideal for application of the KPI technique. We present a kernel phase analysis of JWST NIRISS full pupil images taken during the instrument commissioning and compare the performance to closely related NIRISS aperture masking interferometry (AMI) observations. For this purpose, we develop and make publicly available the custom Kpi3Pipeline data reduction pipeline enabling the extraction of kernel phase observables from JWST images. The extracted observables are saved into a new and versatile kernel phase FITS file data exchange format. Furthermore, we present our new and publicly available fouriever toolkit which can be used to search for companions and derive detection limits from KPI, AMI, and long-baseline interferometry observations while accounting for correlated uncertainties in the model fitting process. Among the four KPI targets that were observed during NIRISS instrument commissioning, we discover a low-contrast (∼1:5) close-in (∼1 λ/D) companion candidate around CPD-66 562 and a new high-contrast (∼1:170) detection separated by ∼1.5 λ/D from 2MASS J062802.01-663738.0. The 5σ companion detection limits around the other two targets reach ∼6.5 mag at ∼200 mas and ∼7 mag at ∼400 mas. Comparing these limits to those obtained from the NIRISS AMI commissioning observations, we find that KPI and AMI perform similar in the same amount of observing time. Due to its 5.6 times higher throughput if compared to AMI, KPI is beneficial for observing faint targets and superior to AMI at separations ≳325 mas. At very small separations (≲100 mas) and between ∼250 and 325 mas, AMI slightly outperforms KPI which suffers from increased photon noise from the core and the first Airy ring of the point-spread function.
The Near Infrared Imager and Slitless Spectrograph for the James Webb Space Telescope. IV. Aperture Masking Interferometry
The James Webb Space Telescope’s Near Infrared Imager and Slitless Spectrograph (JWST-NIRISS) flies a 7-hole non-redundant mask (NRM), the first such interferometer in space, operating at 3–5 μm wavelengths, and a bright limit of ≃4 mag in W2. We describe the NIRISS Aperture Masking Interferometry (AMI) mode to help potential observers understand its underlying principles, present some sample science cases, explain its operational observing strategies, indicate how AMI proposals can be developed with data simulations, and how AMI data can be analyzed. We also present key results from commissioning AMI. Since the allied Kernel Phase Imaging (KPI) technique benefits from AMI operational strategies, we also cover NIRISS KPI methods and analysis techniques, including a new user-friendly KPI pipeline. The NIRISS KPI bright limit is ≃8 W2 (4.6 μm) magnitudes. AMI NRM and KPI achieve an inner working angle of ∼70 mas, which is well inside the ∼400 mas NIRCam inner working angle for its circular occulter coronagraphs at comparable wavelengths.
Observing Outer Planet Satellites (Except Titan) with the James Webb Space Telescope: Science Justification and Observational Requirements
The James Webb Space Telescope (JWST) will allow observations with a unique combination of spectral, spatial, and temporal resolution for the study of outer planet satellites within our Solar System. We highlight the infrared spectroscopy of icy moons and temporal changes on geologically active satellites as two particularly valuable avenues of scientific inquiry. While some care must be taken to avoid saturation issues, JWST has observation modes that should provide excellent infrared data for such studies.
The JWST Early Release Science Program for the Direct Imaging and Spectroscopy of Exoplanetary Systems
The direct characterization of exoplanetary systems with high-contrast imaging is among the highest priorities for the broader exoplanet community. As large space missions will be necessary for detecting and characterizing exo-Earth twins, developing the techniques and technology for direct imaging of exoplanets is a driving focus for the community. For the first time, JWST will directly observe extrasolar planets at mid-infrared wavelengths beyond 5 μm, deliver detailed spectroscopy revealing much more precise chemical abundances and atmospheric conditions, and provide sensitivity to analogs of our solar system ice-giant planets at wide orbital separations, an entirely new class of exoplanet. However, in order to maximize the scientific output over the lifetime of the mission, an exquisite understanding of the instrumental performance of JWST is needed as early in the mission as possible. In this paper, we describe our 55 hr Early Release Science Program that will utilize all four JWST instruments to extend the characterization of planetary-mass companions to ∼15 μm as well as image a circumstellar disk in the mid-infrared with unprecedented sensitivity. Our program will also assess the performance of the observatory in the key modes expected to be commonly used for exoplanet direct imaging and spectroscopy, optimize data calibration and processing, and generate representative data sets that will enable a broad user base to effectively plan for general observing programs in future Cycles.
Wavefront Error Recovery and Companion Identification with the James Webb Space Telescope
The James Webb Space Telescope is orders of magnitude more sensitive than any other facility across the near to mid-infrared wavelengths. Many approved programs take advantage of its highly stable point spread function (PSF) to directly detect faint companions using diverse high-contrast imaging (HCI) techniques. However, periodic re-phasing of the Optical Telescope Element (OTE) is required due to slow thermal drifts distorting to the primary mirror backplane along with stochastic tilt events on individual mirror segments. Many programs utilize observations of a reference star to remove the stellar contribution within an image which can typically take half of the total allocated time. We present a high-contrast imaging technique for the NIRISS instrument that uses the measured wavefront error (WFE) from a phase calibration observation (performed roughly every 48 hours) as prior information in a Bayesian analysis with nested sampling. This technique estimates the WFE of a given observation and simultaneously searches for faint companions, without using a reference star. We estimate the wavefront error for both full aperture and aperture masking interferometry (AMI) imaging modes using three low order Zernike coefficients per mirror segment, using the Hexike basis, to generate synthetic PSFs and compare to simulations. We compare our technique to traditional interferometric analysis in realistic NIRISS F430M simulations both relative to the photon noise limit, and through recovering an injected companion with \\(\\Delta\\)F430M= 8 mag at 0.2''. With future testing, this technique may save significant amounts of observing time given the results of our current implementation on NIRISS simulations.
In-focus wavefront sensing using non-redundant mask-induced pupil diversity
Wavefront estimation using in-focus image data is critical to many applications. This data is invariant to a sign flip with complex conjugation of the complex amplitude in the pupil, making for a non-unique solution. Information from an in-focus image taken through a non-redundant pupil mask (NRM) can break this ambiguity, enabling the true aberration to be determined. We demonstrate this by priming a full pupil Gerchberg-Saxton phase retrieval with NRM fringe phase information. We apply our method to measure simulated aberrations on the segmented James Webb Space Telescope (JWST) mirror using full pupil and NRM data from its Near Infrared Imager and Slitless Spectrograph (NIRISS).