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result(s) for
"Griffith, Dan M."
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Imaging canopy temperature
2021
Canopy temperature T
can is a key driver of plant function that emerges as a result of interacting biotic and abiotic processes and properties. However, understanding controls on T
can and forecasting canopy responses to weather extremes and climate change are difficult due to sparse measurements of T
can at appropriate spatial and temporal scales. Burgeoning observations of T
can from thermal cameras enable evaluation of energy budget theory and better understanding of how environmental controls, leaf traits and canopy structure influence temperature patterns. The canopy scale is relevant for connecting to remote sensing and testing biosphere model predictions. We anticipate that future breakthroughs in understanding of ecosystem responses to climate change will result from multiscale observations of T
can across a range of ecosystems.
Journal Article
Paradoxical effects of obesity on T cell function during tumor progression and PD-1 checkpoint blockade
by
Grossenbacher, Steven K
,
Mukherjee, Sarbajit
,
Khuat, Lam T
in
Aging
,
Animal models
,
Anticancer properties
2019
The recent successes of immunotherapy have shifted the paradigm in cancer treatment, but because only a percentage of patients are responsive to immunotherapy, it is imperative to identify factors impacting outcome. Obesity is reaching pandemic proportions and is a major risk factor for certain malignancies, but the impact of obesity on immune responses, in general and in cancer immunotherapy, is poorly understood. Here, we demonstrate, across multiple species and tumor models, that obesity results in increased immune aging, tumor progression and PD-1-mediated T cell dysfunction which is driven, at least in part, by leptin. However, obesity is also associated with increased efficacy of PD-1/PD-L1 blockade in both tumor-bearing mice and clinical cancer patients. These findings advance our understanding of obesity-induced immune dysfunction and its consequences in cancer and highlight obesity as a biomarker for some cancer immunotherapies. These data indicate a paradoxical impact of obesity on cancer. There is heightened immune dysfunction and tumor progression but also greater anti-tumor efficacy and survival after checkpoint blockade which directly targets some of the pathways activated in obesity.
Journal Article
Validation of MOPITT carbon monoxide using ground-based Fourier transform infrared spectrometer data from NDACC
by
Griffith, David W. T.
,
Jones, Nicholas B.
,
Hase, Frank
in
Atmospheric chemistry
,
Atmospheric composition
,
Bias
2017
The Measurements of Pollution in the Troposphere (MOPITT) satellite instrument provides the longest continuous dataset of carbon monoxide (CO) from space. We perform the first validation of MOPITT version 6 retrievals using total column CO measurements from ground-based remote-sensing Fourier transform infrared spectrometers (FTSs). Validation uses data recorded at 14 stations, that span a wide range of latitudes (80° N to 78° S), in the Network for the Detection of Atmospheric Composition Change (NDACC). MOPITT measurements are spatially co-located with each station, and different vertical sensitivities between instruments are accounted for by using MOPITT averaging kernels (AKs). All three MOPITT retrieval types are analyzed: thermal infrared (TIR-only), joint thermal and near infrared (TIR–NIR), and near infrared (NIR-only). Generally, MOPITT measurements overestimate CO relative to FTS measurements, but the bias is typically less than 10 %. Mean bias is 2.4 % for TIR-only, 5.1 % for TIR–NIR, and 6.5 % for NIR-only. The TIR–NIR and NIR-only products consistently produce a larger bias and lower correlation than the TIR-only. Validation performance of MOPITT for TIR-only and TIR–NIR retrievals over land or water scenes is equivalent. The four MOPITT detector element pixels are validated separately to account for their different uncertainty characteristics. Pixel 1 produces the highest standard deviation and lowest correlation for all three MOPITT products. However, for TIR-only and TIR–NIR, the error-weighted average that includes all four pixels often provides the best correlation, indicating compensating pixel biases and well-captured error characteristics. We find that MOPITT bias does not depend on latitude but rather is influenced by the proximity to rapidly changing atmospheric CO. MOPITT bias drift has been bound geographically to within ±0.5 % yr−1 or lower at almost all locations.
Journal Article
The recent increase of atmospheric methane from 10 years of ground-based NDACC FTIR observations since 2005
by
Hausmann, Petra
,
Griffith, David W. T.
,
Bader, Whitney
in
Anthropogenic factors
,
Atmospheric chemistry
,
Atmospheric composition
2017
Changes of atmospheric methane total columns (CH4) since 2005 have been evaluated using Fourier transform infrared (FTIR) solar observations carried out at 10 ground-based sites, affiliated to the Network for Detection of Atmospheric Composition Change (NDACC). From this, we find an increase of atmospheric methane total columns of 0.31 ± 0.03 % year−1 (2σ level of uncertainty) for the 2005–2014 period. Comparisons with in situ methane measurements at both local and global scales show good agreement. We used the GEOS-Chem chemical transport model tagged simulation, which accounts for the contribution of each emission source and one sink in the total methane, simulated over 2005–2012. After regridding according to NDACC vertical layering using a conservative regridding scheme and smoothing by convolving with respective FTIR seasonal averaging kernels, the GEOS-Chem simulation shows an increase of atmospheric methane total columns of 0.35 ± 0.03 % year−1 between 2005 and 2012, which is in agreement with NDACC measurements over the same time period (0.30 ± 0.04 % year−1, averaged over 10 stations). Analysis of the GEOS-Chem-tagged simulation allows us to quantify the contribution of each tracer to the global methane change since 2005. We find that natural sources such as wetlands and biomass burning contribute to the interannual variability of methane. However, anthropogenic emissions, such as coal mining, and gas and oil transport and exploration, which are mainly emitted in the Northern Hemisphere and act as secondary contributors to the global budget of methane, have played a major role in the increase of atmospheric methane observed since 2005. Based on the GEOS-Chem-tagged simulation, we discuss possible cause(s) for the increase of methane since 2005, which is still unexplained.
Journal Article
Process-evaluation of tropospheric humidity simulated by general circulation models using water vapor isotopologues: 1. Comparison between models and observations
by
Sherlock, Vanessa
,
Mahieu, Emmanuel
,
Hase, Frank
in
Atmospheric circulation
,
Atmospheric sciences
,
Chemistry
2012
The goal of this study is to determine how H2O and HDO measurements in water vapor can be used to detect and diagnose biases in the representation of processes controlling tropospheric humidity in atmospheric general circulation models (GCMs). We analyze a large number of isotopic data sets (four satellite, sixteen ground‐based remote‐sensing, five surface in situ and three aircraft data sets) that are sensitive to different altitudes throughout the free troposphere. Despite significant differences between data sets, we identify some observed HDO/H2O characteristics that are robust across data sets and that can be used to evaluate models. We evaluate the isotopic GCM LMDZ, accounting for the effects of spatiotemporal sampling and instrument sensitivity. We find that LMDZ reproduces the spatial patterns in the lower and mid troposphere remarkably well. However, it underestimates the amplitude of seasonal variations in isotopic composition at all levels in the subtropics and in midlatitudes, and this bias is consistent across all data sets. LMDZ also underestimates the observed meridional isotopic gradient and the contrast between dry and convective tropical regions compared to satellite data sets. Comparison with six other isotope‐enabled GCMs from the SWING2 project shows that biases exhibited by LMDZ are common to all models. The SWING2 GCMs show a very large spread in isotopic behavior that is not obviously related to that of humidity, suggesting water vapor isotopic measurements could be used to expose model shortcomings. In a companion paper, the isotopic differences between models are interpreted in terms of biases in the representation of processes controlling humidity. Key Points Isotopic evaluation with in situ, satellite, ground‐based remote‐sensing data Consistent features and model‐data differences across data sets Isotopic GCMs share common biases
Journal Article
The minimal detectable change cannot reliably replace the minimal important difference
2010
We compared the minimal important difference (MID) with the minimal detectable change (MDC) generated by distribution-based methods.
Studies of two quality-of-life instruments (Chronic Respiratory Questionnaire [CRQ] and Rhinoconjunctivitis Quality of Life Questionnaire [RQLQ]) and two physician-rated disease-activity indices (Pediatric Ulcerative Colitis Activity Index [PUCAI] and Pediatric Crohn's Disease Activity Index [PCDAI]) provided longitudinal data. The MID values were calculated from global ratings of change (small change for CRQ and RQLQ; moderate for PUCAI and PCDAI) using receiver-operating characteristic (ROC) curve and mean change. Results were compared with five distribution-based strategies.
Of the methods used to calculate the MDC, the 95% limits of agreement and the reliable change index yielded the largest estimates. In the patient-rated psychometric instruments, 0.5 SD was always greater than 1 standard error of measurements (SEM), and both fell between the mean change and the ROC estimates, on two of four occasions. The reliable change index came closest to MID of moderate change.
For patient-rated psychometric instruments, 0.5 SD and 1 SEM provide values closest to the anchor-based estimates of MID derived from small change, and the reliable change index for physician-rated clinimetric indices based on moderate change. Lack of consistency across measures suggests that distribution-based approaches should act only as temporary substitutes, pending availability of empirically established anchor-based MID values.
Journal Article
Characterization and potential for reducing optical resonances in Fourier transform infrared spectrometers of the Network for the Detection of Atmospheric Composition Change (NDACC)
2021
Although optical components in Fourier transform infrared (FTIR) spectrometers are preferably wedged, in practice, infrared spectra typically suffer from the effects of optical resonances (“channeling”) affecting the retrieval of weakly absorbing gases. This study investigates the level of channeling of each FTIR spectrometer within the Network for the Detection of Atmospheric Composition Change (NDACC). Dedicated spectra were recorded by more than 20 NDACC FTIR spectrometers using a laboratory mid-infrared source and two detectors. In the indium antimonide (InSb) detector domain (1900–5000 cm−1), we found that the amplitude of the most pronounced channeling frequency amounts to 0.1 ‰ to 2.0 ‰ of the spectral background level, with a mean of (0.68±0.48) ‰ and a median of 0.60 ‰. In the mercury cadmium telluride (HgCdTe) detector domain (700–1300 cm−1), we find even stronger effects, with the largest amplitude ranging from 0.3 ‰ to 21 ‰ with a mean of (2.45±4.50) ‰ and a median of 1.2 ‰. For both detectors, the leading channeling frequencies are 0.9 and 0.11 or 0.23 cm−1 in most spectrometers. The observed spectral frequencies of 0.11 and 0.23 cm−1 correspond to the optical thickness of the beam splitter substrate. The 0.9 cm−1 channeling is caused by the air gap in between the beam splitter and compensator plate. Since the air gap is a significant source of channeling and the corresponding amplitude differs strongly between spectrometers, we propose new beam splitters with the wedge of the air gap increased to at least 0.8∘. We tested the insertion of spacers in a beam splitter's air gap to demonstrate that increasing the wedge of the air gap decreases the 0.9 cm−1 channeling amplitude significantly. A wedge of the air gap of 0.8∘ reduces the channeling amplitude by about 50 %, while a wedge of about 2∘ removes the 0.9 cm−1 channeling completely. This study shows the potential for reducing channeling in the FTIR spectrometers operated by the NDACC, thereby increasing the quality of recorded spectra across the network.
Journal Article
A decade of CH4, CO and N2O in situ measurements at Lauder, New Zealand: assessing the long-term performance of a Fourier transform infrared trace gas and isotope analyser
by
Brailsford, Gordon
,
Sherlock, Vanessa
,
Moss, Rowena
in
Accuracy
,
Air pollution
,
Atmospheric models
2019
We present a 10-year (January 2007–December 2016) time series of continuous in situ measurements of methane (CH4), carbon monoxide (CO) and nitrous oxide (N2O) made by an in situ Fourier transform infrared trace gas and isotope analyser (FTIR) operated at Lauder, New Zealand (45.04 S, 169.68 E, 370 m a. m. s. l.). Being the longest continuous deployed operational FTIR system of this type, we are in an ideal position to perform a practical evaluation of the multi-year performance of the analyser. The operational methodology, measurement precision, reproducibility, accuracy and instrument reliability are reported. We find the FTIR has a measurement repeatability of the order of 0.37 ppb (1σ standard deviation) for CH4, 0.31 ppb for CO and 0.12 ppb for N2O. Regular target cylinder measurements provide a reproducibility estimate of 1.19 ppb for CH4, 0.74 ppb for CO and 0.27 ppb for N2O. FTIR measurements are compared to co-located ambient air flask samples acquired at Lauder since May 2009, which allows a long-term assessment of the FTIR data set across annual and seasonal composition changes. Comparing FTIR and co-located flask measurements show that the bias (FTIR minus flask) for CH4 of −1.02 ± 2.61 ppb and CO of −0.43 ± 1.60 ppb are within the Global Atmospheric Watch (GAW)-recommended compatibility goals of 2 ppb. The N2O FTIR flask bias of −0.01 ± 0.77 ppb is within the GAW-recommended compatibility goals of 0.1 ppb and should be viewed as a serendipitous result due to the large standard deviation along with known systematic differences in the measurement sets. Uncertainty budgets for each gas are also constructed based on instrument precision, reproducibility and accuracy. In the case of CH4, systematic uncertainty dominates, whilst for CO and N2O it is comparable to the random uncertainty component. The long-term instrument stability, precision estimates and flask comparison results indicate the FTIR CH4 and CO time series meet the GAW compatibility recommendations across multiple years of operation (and instrument changes) and are sufficient to capture annual trends and seasonal cycles observed at Lauder. The differences between FTIR and flask N2O measurements need to be reconciled. Trend analysis of the 10-year time series captures seasonal cycles and the secular upward trend of CH4 and N2O. The CH4 and CO time series have the required precision and accuracy at a high enough temporal resolution to be used in inversion models in a data-sparse region of the world.
Journal Article
Robotics: self-replication from random parts
2005
Autonomously self-replicating machines have long caught the imagination but have yet to acquire the sophistication of biological systems, which assemble structures from disordered building blocks. Here we describe the autonomous self-replication of a reconfigurable string of parts from randomly positioned input components. Such components, if suitably miniaturized and mass-produced, could constitute self-fabricating systems whose assembly is brought about by the parts themselves.
Journal Article
Airborne imaging spectroscopy surveys of Arctic and boreal Alaska and northwestern Canada 2017–2023
by
Bue, Brian D.
,
Townsend, Philip A.
,
Brodrick, Philip G.
in
704/158/2445
,
704/158/2454
,
704/158/670
2025
Since 2015, NASA’s Arctic Boreal Vulnerability Experiment (ABoVE) has investigated how climate change impacts the vulnerability and/or resilience of the permafrost-affected ecosystems of Alaska and northwestern Canada. ABoVE conducted extensive surveys with the Next Generation Airborne Visible/Infrared Imaging Spectrometer (AVIRIS-NG) during 2017, 2018, 2019, and 2022 and with AVIRIS-3 in 2023 to characterize tundra, taiga, peatlands, and wetlands in unprecedented detail. The ABoVE AVIRIS dataset comprises ~1700 individual flight lines covering ~120,000 km
2
with nominal 5 m × 5 m spatial resolution. Data include individual transects to capture important gradients like the tundra-taiga ecotone and maps of up to 10,000 km
2
for key study areas like the Mackenzie Delta. The ABoVE AVIRIS surveys enable diverse ecosystem science, provide crucial benchmark data for validating retrievals from the PACE, PRISMA, and EnMAP satellite sensors and help prepare for the SBG and CHIME missions. This paper guides interested researchers to fully explore the ABoVE AVIRIS spectral imagery and complements our guide to the ABoVE airborne synthetic aperture radar surveys.
Journal Article