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Experimental data on electromagnetic fluctuations in DIII-D, made available by the Faraday-effect Radial Interferometer-Polarimeter (RIP) diagnostic, is examined in comparison with detailed gyrokinetic simulations using Gyrokinetic Electromagnetic Numerical Experiment (GENE). The diagnostic has the unique capability of making internal measurements of fluctuating magnetic fields \\(\\frac{\\int n_e \\delta B_r dR}{\\int n_e dR}\\). Local linear simulations identify microtearing modes (MTMs) over a substantial range of toroidal mode numbers (peaking at \\(n=15\\)) with frequencies in good agreement with the experimental data. Local nonlinear simulations reinforce this result by producing a magnetic frequency spectrum in good agreement with that diagnosed by RIP. Simulated heat fluxes are in the range of experimental expectations. However, magnetic fluctuation amplitudes are substantially lower than the experimental expectations. Possible sources of this discrepancy are discussed, notably the fact that the diagnostics are localized at the mid-plane -- the poloidal location where the simulations predict the fluctuation amplitudes to be smallest. Despite some discrepancies, several connections between simulations and experiments, combined with general criteria discriminating between potential pedestal instabilities, strongly point to MTMs as the source of the observed magnetic fluctuations.

FACETS (Framework Application for Core-Edge Transport Simulations), is now in its third year. The FACETS team has developed a framework for concurrent coupling of parallel computational physics for use on Leadership Class Facilities (LCFs). In the course of the last year, FACETS has tackled many of the difficult problems of moving to parallel, integrated modeling by developing algorithms for coupled systems, extracting legacy applications as components, modifying them to run on LCFs, and improving the performance of all components. The development of FACETS abides by rigorous engineering standards, including cross platform build and test systems, with the latter covering regression, performance, and visualization. In addition, FACETS has demonstrated the ability to incorporate full turbulence computations for the highest fidelity transport computations. Early indications are that the framework, using such computations, scales to multiple tens of thousands of processors. These accomplishments were a result of an interdisciplinary collaboration among computational physics, computer scientists and applied mathematicians on the team.

Methods are described that extend fields from reconstructed equilibria to include scrape-off-layer current through extrapolated parametrized and experimental fits. The extrapolation includes both the effects of the toroidal-field and pressure gradients which produce scrape-off-layer current after recomputation of the Grad-Shafranov solution. To quantify the degree that inclusion of scrape-off-layer current modifies the equilibrium, the \\(\\chi\\)-squared goodness-of-fit parameter is calculated for cases with and without scrape-off-layer current. The change in \\(\\chi\\)-squared is found to be minor when scrape-off-layer current is included however flux surfaces are shifted by up to 3 cm. The impact on edge modes of these scrape-off-layer modifications is also found to be small and the importance of these methods to nonlinear computation is discussed.

Extended-MHD modeling of DIII-D tokamak [J. L. Luxon, Nucl. Fusion 42, 614 (2002)] quiescent H-mode (QH-mode) discharges with nonlinear NIMROD [C. R. Sovinec et al., J. Comput. Phys. 195, 355 (2004)] simulations saturates into a turbulent state but does not saturate when the steady-state flow inferred from measurements is not included. This is consistent with the experimental observations of the quiescent regime on DIII-D. The simulation with flow develops into a saturated turbulent state where the n=1 and 2 toroidal modes become dominant through an inverse cascade. Each mode in the range of n=1-5 is dominant at a different time. Consistent with experimental observations during QH-mode, the simulated state leads to large particle transport relative to the thermal transport. Analysis shows that the amplitude and phase of the density and temperature perturbations differ resulting in greater fluctuation-induced convective particle transport relative to the convective thermal transport. Comparison to magnetic-coil measurements shows that rotation frequencies differ between the simulation and experiment, which indicates that more sophisticated extended-MHD two-fluid modeling is required.

The extended-MHD NIMROD code [C.R. Sovinec and J.R. King, J. Comput. Phys. 229, 5803 (2010)] models broadband-MHD activity from a reconstruction of a quiescent H-mode shot on the DIII-D tokamak [J. L. Luxon, Nucl. Fusion 42, 614 (2002)]. Computations with the reconstructed toroidal and poloidal ion flows exhibit low-n perturbations (n=1-5) that grow and saturate into a turbulent-like MHD state. The workflow used to project the reconstructed state onto the NIMROD basis functions re-solves the Grad-Shafranov equation and extrapolates profiles to include scrape-off-layer currents. Evaluation of the transport from the turbulent-like MHD state leads to a relaxation of the density and temperature profiles.

The guiding-center kinetic neoclassical transport code, XGC0, [C.S. Chang et. al, Phys. Plasmas 11, 2649 (2004)] is used to compute the heat fluxes and the heat-load width in the outer divertor plates of Alcator C-Mod and DIII-D tokamaks. The dependence of the width of heat-load fluxes on neoclassical effects, neutral collisions and anomalous transport is investigated using the XGC0 code. The XGC0 code includes realistic X-point geometry, a neutral source model, the effects of collisions, and a diffusion model for anomalous transport. It is observed that width of the XGC0 neoclassical heat-load is approximately inversely proportional to the total plasma current \\(I_{\\rm p}\\). The scaling of the width of the divertor heat-load with plasma current is examined for an Alcator C-Mod discharge and four DIII-D discharges. The scaling of the divertor heat-load width with plasma current is found to be weaker in the Alcator C-Mod discharge compared to scaling found in the DIII-D discharges. The effect of neutral collisions on the \\(1/I_{\\rm p}\\) scaling of heat-load width is shown not to be significant. Although inclusion of poloidally uniform anomalous transport results in a deviation from the \\(1/I_{\\rm p}\\) scaling, the inclusion of the anomalous transport that is driven by ballooning-type instabilities results in recovering the neoclassical \\(1/I_{\\rm p}\\) scaling. The Bohm or Gyro-Bohm scalings of anomalous transport does not strongly affect the dependence of the heat-load width on plasma current. The inclusion of anomalous transport, in general, results in widening the width of neoclassical divertor heat-load and enhances the neoclassical heat-load fluxes on the divertor plates. Understanding heat transport in the tokamak scrape-off layer plasmas is important for strengthening the basis for predicting divertor conditions in ITER.

Medulloblastoma is associated with rare hereditary cancer predisposition syndromes; however, consensus medulloblastoma predisposition genes have not been defined and screening guidelines for genetic counselling and testing for paediatric patients are not available. We aimed to assess and define these genes to provide evidence for future screening guidelines. In this international, multicentre study, we analysed patients with medulloblastoma from retrospective cohorts (International Cancer Genome Consortium [ICGC] PedBrain, Medulloblastoma Advanced Genomics International Consortium [MAGIC], and the CEFALO series) and from prospective cohorts from four clinical studies (SJMB03, SJMB12, SJYC07, and I-HIT-MED). Whole-genome sequences and exome sequences from blood and tumour samples were analysed for rare damaging germline mutations in cancer predisposition genes. DNA methylation profiling was done to determine consensus molecular subgroups: WNT (MBWNT), SHH (MBSHH), group 3 (MBGroup3), and group 4 (MBGroup4). Medulloblastoma predisposition genes were predicted on the basis of rare variant burden tests against controls without a cancer diagnosis from the Exome Aggregation Consortium (ExAC). Previously defined somatic mutational signatures were used to further classify medulloblastoma genomes into two groups, a clock-like group (signatures 1 and 5) and a homologous recombination repair deficiency-like group (signatures 3 and 8), and chromothripsis was investigated using previously established criteria. Progression-free survival and overall survival were modelled for patients with a genetic predisposition to medulloblastoma. We included a total of 1022 patients with medulloblastoma from the retrospective cohorts (n=673) and the four prospective studies (n=349), from whom blood samples (n=1022) and tumour samples (n=800) were analysed for germline mutations in 110 cancer predisposition genes. In our rare variant burden analysis, we compared these against 53 105 sequenced controls from ExAC and identified APC, BRCA2, PALB2, PTCH1, SUFU, and TP53 as consensus medulloblastoma predisposition genes according to our rare variant burden analysis and estimated that germline mutations accounted for 6% of medulloblastoma diagnoses in the retrospective cohort. The prevalence of genetic predispositions differed between molecular subgroups in the retrospective cohort and was highest for patients in the MBSHH subgroup (20% in the retrospective cohort). These estimates were replicated in the prospective clinical cohort (germline mutations accounted for 5% of medulloblastoma diagnoses, with the highest prevalence [14%] in the MBSHH subgroup). Patients with germline APC mutations developed MBWNT and accounted for most (five [71%] of seven) cases of MBWNT that had no somatic CTNNB1 exon 3 mutations. Patients with germline mutations in SUFU and PTCH1 mostly developed infant MBSHH. Germline TP53 mutations presented only in childhood patients in the MBSHH subgroup and explained more than half (eight [57%] of 14) of all chromothripsis events in this subgroup. Germline mutations in PALB2 and BRCA2 were observed across the MBSHH, MBGroup3, and MBGroup4 molecular subgroups and were associated with mutational signatures typical of homologous recombination repair deficiency. In patients with a genetic predisposition to medulloblastoma, 5-year progression-free survival was 52% (95% CI 40–69) and 5-year overall survival was 65% (95% CI 52–81); these survival estimates differed significantly across patients with germline mutations in different medulloblastoma predisposition genes. Genetic counselling and testing should be used as a standard-of-care procedure in patients with MBWNT and MBSHH because these patients have the highest prevalence of damaging germline mutations in known cancer predisposition genes. We propose criteria for routine genetic screening for patients with medulloblastoma based on clinical and molecular tumour characteristics. German Cancer Aid; German Federal Ministry of Education and Research; German Childhood Cancer Foundation (Deutsche Kinderkrebsstiftung); European Research Council; National Institutes of Health; Canadian Institutes for Health Research; German Cancer Research Center; St Jude Comprehensive Cancer Center; American Lebanese Syrian Associated Charities; Swiss National Science Foundation; European Molecular Biology Organization; Cancer Research UK; Hertie Foundation; Alexander and Margaret Stewart Trust; V Foundation for Cancer Research; Sontag Foundation; Musicians Against Childhood Cancer; BC Cancer Foundation; Swedish Council for Health, Working Life and Welfare; Swedish Research Council; Swedish Cancer Society; the Swedish Radiation Protection Authority; Danish Strategic Research Council; Swiss Federal Office of Public Health; Swiss Research Foundation on Mobile Communication; Masaryk University; Ministry of Health of the Czech Republic; Research Council of Norway; Genome Canada; Genome BC; Terry Fox Research Institute; Ontario Institute for Cancer Research; Pediatric Oncology Group of Ontario; The Family of Kathleen Lorette and the Clark H Smith Brain Tumour Centre; Montreal Children's Hospital Foundation; The Hospital for Sick Children: Sonia and Arthur Labatt Brain Tumour Research Centre, Chief of Research Fund, Cancer Genetics Program, Garron Family Cancer Centre, MDT's Garron Family Endowment; BC Childhood Cancer Parents Association; Cure Search Foundation; Pediatric Brain Tumor Foundation; Brainchild; and the Government of Ontario.

Due to the major role of the sun in heating the earth's surface, the atmospheric planetary boundary layer over land is inherently marked by a diurnal cycle. The afternoon transition, the period of the day that connects the daytime dry convective boundary layer to the night-time stable boundary layer, still has a number of unanswered scientific questions. This phase of the diurnal cycle is challenging from both modelling and observational perspectives: it is transitory, most of the forcings are small or null and the turbulence regime changes from fully convective, close to homogeneous and isotropic, toward a more heterogeneous and intermittent state. These issues motivated the BLLAST (Boundary-Layer Late Afternoon and Sunset Turbulence) field campaign that was conducted from 14 June to 8 July 2011 in southern France, in an area of complex and heterogeneous terrain. A wide range of instrumented platforms including full-size aircraft, remotely piloted aircraft systems, remote-sensing instruments, radiosoundings, tethered balloons, surface flux stations and various meteorological towers were deployed over different surface types. The boundary layer, from the earth's surface to the free troposphere, was probed during the entire day, with a focus and intense observation periods that were conducted from midday until sunset. The BLLAST field campaign also provided an opportunity to test innovative measurement systems, such as new miniaturized sensors, and a new technique for frequent radiosoundings of the low troposphere. Twelve fair weather days displaying various meteorological conditions were extensively documented during the field experiment. The boundary-layer growth varied from one day to another depending on many contributions including stability, advection, subsidence, the state of the previous day's residual layer, as well as local, meso- or synoptic scale conditions. Ground-based measurements combined with tethered-balloon and airborne observations captured the turbulence decay from the surface throughout the whole boundary layer and documented the evolution of the turbulence characteristic length scales during the transition period. Closely integrated with the field experiment, numerical studies are now underway with a complete hierarchy of models to support the data interpretation and improve the model representations.

There is a worldwide tendency to replace Dobson spectrophotometers in ground‐based total ozone (TOZ) measurements by more advanced Brewer spectrophotometers. Ensuring the homogeneity of these data sets is of utmost importance if changes in TOZ of a few percent over long time periods are to be diagnosed accurately. Previous studies have identified a seasonal bias of a few percent between midlatitude Brewer and Dobson measurements. At Arosa (Switzerland), two Dobson and three Brewer instruments have been colocated since 1998, providing a unique data set of quasi‐simultaneous observations, invaluable to study systematic differences between these measurements. The differences are partially attributed to the seasonal variability in atmospheric temperatures and ozone slant paths (OSP). The sensitivity to the temperature dependence of the ozone absorption cross section is calculated for each operational Brewer spectrophotometers at Arosa by using different high‐ and low‐resolution reference spectra appropriately weighted with the instruments' slit functions, whereas the information on the primary standard instruments is used for all the Dobson instruments. The Brewer retrieval algorithm reveals a higher sensitivity to the reference spectra applied than the Dobson. When adopting the Bass and Paur (1985) or Malicet et al. (1995) ozone absorption spectra with their specific temperature dependence, and correcting for the OSP effect, the seasonal bias between Dobson and Brewer TOZ measurements is reduced to 0.6%. Conversely, these differences increase when using the spectral data of Burrows et al. (1999). This finding illustrates that the accuracy of ground‐based spectrophotometric TOZ measurements is limited by the uncertainty in the ozone cross sections measured by different internationally leading laboratories.

This paper presents the new photometer CE318-T, able to perform daytime and night-time photometric measurements using the sun and the moon as light source. Therefore,this new device permits a complete cycle of diurnal aerosol and water vapour measurements valuable to enhance atmospheric monitoring to be extracted. In this study wehave found significantly higher precision of triplets when comparing the CE318-T master instrument and the Cimel AErosol RObotic NET work (AERONET) master (CE318-AERONET) triplets as a result of the new CE318-T tracking system. Regarding the instrument calibration, two new methodologies to transfer the calibration from a reference instrument using only daytime measurements (Sun Ratio and Sun-Moon gain factor techniques) are presented and discussed. These methods allow the reduction of the previous complexities inherent to nocturnal calibration. A quantitative estimation of CE318-T AOD uncertainty by means of error propagation theory during daytime revealed AOD uncertainties (u(sup D)(sub AOD)) for Langley-calibrated instruments similar to the expected values for other reference instruments (0.002-0.009). We have also found u(sup D)(sub AOD) values similar to the values reported in sun photometry for field instruments (approximately 0.015). In the case of the night-time period, the CE318-T-estimated standard combined uncertainty (u(sup N)(sub AOD)) is dependent not only on the calibration technique but also on illumination conditions and the instrumental noise. These values range from 0.011-0.018 for Lunar Langley-calibrated instruments to 0.012-0.021 for instruments calibrated using the Sun Ratio technique. In the case of moon-calibrated instruments using the Sun-Moon gain factor method and sun calibrated using the Langley technique, we found u(sup N)(sub AOD) ranging from 0.016 to 0.017 (up to 0.019 in 440 nm channel), not dependent on any lunar irradiance model. A subsequent performance evaluation including CE318-T and collocated measurements from independent reference instruments has served to assess the CE318-T performance as well as to confirm its estimated uncertainty. Daytime AOD evaluation, performed at Izana station from March to June 2014, encompassed measurements from a reference CE318-T, a CE318-AERONET master instrument, a Precision Filter Radiometer (PFR) and a Precision Spectroradiometer (PSR) prototype, reporting low AOD discrepancies between the four instruments (up to 0.006). The nocturnal AOD evaluation was performed using CE318-T- and starphotometer-collocated measurements and also by means of a day/night coherence transition test using the CE318-T master instrument and the CE318 daytime data from the CE318-AERONET master instrument. Results showed low discrepancies with the star photometer at 870 and 500 nm channels(less tna or equal to 0.013) and differences with AERONET daytime data (1 h after and before sunset and sunrise) in agreement with the estimated u(sup N)(sub AOD) values at all illumination conditions in the case of channels within the visible spectral range, and only for high moon's illumination conditions in the case of near infrared channels. Perceptible water vapour (PWV) validation showed a good agreement between CE318-T and Global Navigation Satellite System (GNSS) PWV values for all illumination conditions, within the expected precision for sun photometry. Finally, two case studies have been included to highlight the ability of the new CE318-T to capture the diurnal cycle of aerosols and water vapour as well as short-term atmospheric variations, critical for climate studies.