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The Chinese mitten crab (Eriocheir sinensis) is a popular aquaculture product in East Asia, especially in China. In the last decade, rice–crab co-culture has rapidly expanded in China. Under this model, crabs are raised in rice fields instead of in traditional aquaculture ponds. In this study, we cultured two varieties of Chinese mitten crabs (Changjiang and Liaohe) in an alkaline region in northwest China and used Illumina MiSeq sequencing to compare the intestinal bacterial alpha diversity and community structure between traditional and co-culture aquaculture models, between two crab varieties, and between female and male crabs. Significant variations in intestinal bacterial communities were found between crab varieties and between female and male crabs but not between aquaculture models. These results show that rice–crab co-culture operations did not obviously impact the crab intestinal bacterial community compared with traditional pond aquaculture. Firmicutes was the most abundant bacterial phylum in the crab intestines (78%, relative abundance). Three dominant operational taxonomic units (OTUs) represented 73.2% of Firmicutes sequences and 56.8% of all sequences. A dominant OTU assigned as Firmicutes that was negatively correlated with crab body length, width, and weight was found in the source water for the experimental area. The results of this study suggest that the aquaculture of Chinese mitten crabs in alkaline regions requires more study to improve cultivation techniques.

Channel dredging in estuaries increases water depth and subsequently impacts sediment dynamics and morphology. The Jiaojiang River Estuary is dredged frequently owing to heavy shipping demands. In this study, the effects of different dredging schemes on siltation were assessed through numerical modeling. The sediment model of the Jiaojiang River Estuary utilized an optimized bottom boundary layer model that considered the bed sediment grain size and fluid mud, and this model was calibrated using field data. Result reveal that channel dredging modifies the flow velocity inside and around the channel by changing the bathymetry; subsequently, this affects the residual current, bed stress, suspended sediment concentration, and sediment fluxes. Increasing the dredging depth and width increases the net sediment fluxes into the channel and dredging depth has a greater influence on the channel siltation thickness. When the dredging depth is 8.4 m or11.4 m, the average siltation thickness of the channel is 0.07 m or 0.15 m per mouth respectively. The parallel movement of the channel has small effects on the siltation volume during the simulation period. The sediment deposits in the channel primarily originates from the tidal flats, through bottom sediment fluxes. Vertical net circulation has a dominant impact on siltation because the difference of horizontal current of each layer on the longitudinal section of the channel increases, which intensifies the lateral sediment transport between the shoal and channel. The influence of vertical frictional dissipation on the lateral circulation at the feature points accounts for more than 50% before dredging, while the non-linear advective term is dominant after dredging. Tidal pumping mainly affects the longitudinal sediment fluxes in the channel. These results can be used for channel management and planning for similar estuaries worldwide.

Using the hydrographic data obtained during two nearly simultaneous surveys in June 2015, we carried out semi-diagnostic calculations with the help of a finite element model and a modified inverse method, to study the circulation in the northern South China Sea (NSCS) during the early summer of 2015. A number of new circulation features were found. (1) In most of the observation region, a large, basin-scale anticyclonic gyre appeared south of the 50-m isobath, which contained anticyclonic eddies. One anticyclonic eddy existed from the sea surface to 50-m depth, whose center showed no tilt, while the center of another eddy tilted eastward from the sea surface to 500-m depth. In the eastern part of the observation region, which is west of the Dongsha Islands, there was a sub-basin-scale cyclonic gyre containing a cyclonic eddy whose center tilted southward from the sea surface to 200-m depth. (2) There was a cross-continental slope current (CCSC) in the area southwest of the Dongsha Islands. Its volume transport was about 2.0×10 6 m 3 /s. (3) From the estimated order of magnitude of the stream function equation, the joint effect term of the baroclinity and relief (JEBAR) and β -effect term are two important dynamic mechanisms affecting the variation of the circulation in the NSCS. (4) The JEBAR, as a transport-generating term, resulted in the dynamic mechanism determining the pattern of the depth-averaged flow across the contours of potential vorticity fH −1 . Furthermore, we show that the negative values of the JEBAR were the most dominant dynamic mechanism, causing the CCSC southwest of the Dongsha Islands to deflect from the isobaths and veer toward the deep water. The CCSC around the Dongsha Islands was located further southwest during the early summer of 2015 than during the fall of 2005 (revealed by a published study), which suggests that the location of the CCSC around the Dongsha Islands may vary with season.

Plumes include thermal plumes and cold plumes, of which thermal plumes receive more attention. Thermal plumes refer to the formation of high-temperature fluid structures near a heat source, which diffuse and propagate within the surrounding environment. In this study, we simulate the formation and evolution of thermal plumes using numerical modeling. Taking Wushashan Power Plant in Xiangshan Bay as an example, the diffusion characteristics of the thermal plume near the power plant were simulated by the optimized FVCOM. Combined with statistical methods and advanced mathematical models, the plume diffusion range under different working conditions was quantified, and the diffusion mechanism was studied. For example, we found that when the flow velocity is halved, the diffusion area of the surface thermal plume decreases by more than half. When the flow rate in Xiangshan Bay is reduced to 5 m3/s, the area of surface temperature rise plumes is small. Using the Richardson number, the characteristics and mechanisms of stratification/mixing near the power plant were explored. It was found that the flow field near the power plant was mainly affected by the momentum of the outlet. During a typhoon, the wind strength and path impact thermal plume diffusion via wind-driven flow.

Water temperature in estuaries is sensitive to thermal discharges and expansive tidal flats; as such, this parameter is essential in maintaining estuarine ecosystem. Semi-enclosed water bodies with poor water exchange easily accumulate heat. This is especially true for Xiangshan Bay, which contains two power plants and a large area of tidal flats. This bay was used as an example to study water temperature and heat dynamics, considering the thermal discharge and tidal flats. This study developed and validated a three-dimensional hydro-heat flux numerical model using field data on tidal elevation, currents, water temperature, and tidal flat temperature. The Finite Volume Community Ocean Model combines an accurate thermal discharge model with the air-water-tidal flat heat flux model. The findings showed that thermal discharge provides heat to the bay in summer and winter, and increases the water temperature of the entire bay by 0.7°C in summer, while maintaining water temperature at 0.52°C in winter. The atmosphere and open seas had greater impacts on heat in the bay in winter and summer. The atmosphere and tidal flats provided heat to the bay in summer and absorbed heat from the bay during winter; the opposite was true for the open sea. The effect of tidal flats in summer is less than that in winter, and provides 1.31 × 10 13 J of heat to the bay in summer, while taking 8.63 × 10 13 J of heat from the bay in winter. This study provides a comprehensive understanding of the effects of tidal flats and thermal discharge on water temperature and heat in macro-tidal bays and estuaries; its results are applicable to similar bays around the world.

In some regions, integrated rice-fish farms have been developed to balance the needs of aquaculture wastewater discharge and rice field irrigation. In this type of aqua-agriculture system, soil is irrigated with aquaculture wastewater, and intestinal bacteria in cultured fish species likely impact soil bacteria through irrigation. However, little is known about the relationship between soil bacteria and intestinal bacteria in some carp species commonly co-cultured in some Asian regions. Therefore, we co-cultured five carp species in aquaculture ponds and used the aquaculture wastewater to irrigate rice fields for over 5 years, and then compared carp intestinal bacterial communities with rice field soil bacterial communities. The results from analysis of similarity and SourceTracker analysis showed that a low similarity (R = 0.7908, P = 0.001) and contribution (an average of 9.9% of bacterial genera) of intestinal bacteria to soil bacterial communities although 77.5% of soil bacterial genera were shared by intestinal bacteria. Our results also indicated that intestinal bacteria in the numerically dominant fish species in the co-culture system do not necessarily impact soil bacteria more significantly than those of less abundant carp species, and that intestinal bacterial communities in one single fish species may impact certain soil bacterial phyla more significantly than others. Our results provide a better understanding of the impact of aquaculture wastewater on rice fields and will be helpful for the development of this type of aqua-agriculture system.

Ocean processes that can influence rapidly changing ocean color include water-mass movement and bio-optical property changes in the water parcel. Traditionally, diurnal variability of bio-optical properties relies on daily time series at fixed locations by satellite sensors or in situ observations. There is a lack of an effective way to observe diurnal variation of bio-optical properties in a moving water parcel on a large scale. In this paper, we propose a new method to acquire diurnal variation of bio-optical properties in a moving water parcel. The novel approach integrates drifting buoy data and GOCI data. The movement of surface current was tracked by a drifting buoy, and its spatiotemporally matching bio-optical properties were obtained via the GOCI data. The results in the Yellow and East China seas during the summers of 2012 and 2013 show that the variation of time series following the movement of water parcel was obviously different from that obtained at fixed locations. The hourly differences of the former are 15.7% and 16.3% smaller than those of the latter for Chl a and total suspended sediment (TSS), respectively. The value of ag440 was more stable within the moving water parcel than in the fixed location. Our approach provides a simple and feasible way for observing diurnal variability of bio-optical properties in a moving surface water parcel.

Massive green tides caused by Ulva prolifera in the Yellow Sea have occurred every summer since 2007 and have caused huge economic losses for local governments. The Subei （North liangsu Province, China） Shoal, with its large-scale Porphyra aquaculture, has been regarded as the most important source of U. prolifera for green tides. To reveal the physical mechanisms of floating and drifting algae in this area, the characteristics of the current, the temperature, the salinity and suspended particulate matter （SPM） in the southwestern Yellow Sea, especially in the Subei Shoal, were studied. The topography of the radial sand ridges in the Subei Shoal constrains the features of the currents and causes net longitudinal and latitudinal movements. The longitudinal net movement is a dominant dynamic factor that can bring U. prolifera into offshore waters. The amount of gas that is produced by algae during photosynthesis determines whether U. prolifera can float well on the sea surface after it is disposed into the water from Porphyra aquacultural apparatus. The Subei Shoal is characterized by a high turbidity, which can result in significant light attenuation and affect the photosynthesis together with the buoyancy of a U. prolifera in the water. According to satellite remote sensing data from 2012, the three-month-averaged surface SPM （April, May and June） in the Subei Shoal was 140 mg/dm^3, and the north of the Subei Shoal （the north of 34.5°N）, it was 11 mg/dm^3. According to the monthly averaged surface SPM in April, the transparency in the Subei Shoal was only 0.1 m, but it often exceeded 2.0 m outside of the Subei Shoal. The results explain why the floating ability of U. prolifera increases significantly once the green algae drifted outside the Subei Shoal.

The brightness reversal of submarine sand waves appearing in the small satellite constellation for environ- ment and disaster monitoring and forecasting （＂HJ- 1A/B＂） CCD sun glitter images can affect the observation and depth inversion of sand wave topography. The simulations of the normalized sun glitter radiance on the submarine sand waves confirm that the reversal would happen at a specific sensor viewing angle, defined as the critical angle. The difference between the calculated critical angle position and the reversal position in the image is about 1＇, which is excellent in agreement. Both the simulation and actual image show that sand wave crests would be indistinct at the reversal position, which may cause problems when using these sun glitter images to analyze spatial characteristics and migration of sand waves. When using the sun glitter image to obtain the depth inversion, one should take the advantage of image properties of sand waves and choose the location in between the reversal position and the brightest position. It is also necessary to pay attention to the brightness reversal when using ＂HI-1A/B＂ CCD images to analyze other oceanic features, such as internal waves, oil slicks, eddies, and ship wakes.

During the last two decades, large-scale high biomass algal blooms of the dinoflagellate Prorocentrum donghaiense Lu have occurred frequently in the East China Sea (ECS). The role of increasing nutrient concentrations in driving those blooms is well-established, but the source population that initiates them is poorly understood. We hypothesized that the front of Taiwan Warm Current (TWC) may serve as a 'seed bank' that initiates P. donghaiense blooms in the ECS, as the physiochemical conditions in the TWC are suitable for the growth of P. donghaiense. In order to test this hypothesis, two surveys at different spatio-temporal scales were conducted in 2010 and 2011. We found a strong correlation in space and time between the abundance of P. donghaiense and the TWC. The spatial extent of the P. donghaiense bloom coincided with the TWC front in both 2010 and 2011. During the early development of the blooms, P. donghaiense concentration was highest at the TWC front, and then the bloom mass shifted inshore over the course of our 2011 survey. The TWC also moved inshore, albeit after the appearance of P. donghaiense. Overall, these results support our hypothesis that P. donghaiense blooms develop from the population at the TWC front in the ECS, suggesting the role of the ocean current front as a seed bank to dinoflagellate blooms.