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result(s) for
"Gupta, Mansi"
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JWST and ALMA Joint Analysis with O II λλ3726, 3729, O III λ4363, O III 88 μm, and O III 52 μm: Multizone Evolution of Electron Densities at z ∼ 0–14 and its Impact on Metallicity Measurements
2025
We present a JWST and Atacama Large Millimeter/submillimeter Array (ALMA) detailed study of the interstellar medium properties of high-redshift galaxies. Our JWST/NIRSpec integral field unit spectroscopy targeting three galaxies at z = 6–7 detects key rest-frame optical emission lines, allowing us to derive [O ii] λλ3726, 3729–based electron densities of ne,optical ∼ 1000 cm−3 on average and [O iii] λ4363–based metallicities of 12+log(O/H)=8.0-8.2 in two galaxies. New ALMA Band 9 and 10 observations detect the [O iii] 52 μm line in one galaxy but do not in the others, resulting in far-infrared (FIR)-based densities of ne,FIR ≲ 500 cm−3 from the [O iii] 52 μm/[O iii] 88 μm ratio, systematically lower than the optical [O ii]-based measurements. These low FIR-based densities are comparable to those at both z ∼ 0 and z > 6 in the literature, including JADES-GS-z14-0 at z = 14.18, suggesting little evolution up to z ∼ 14, in contrast to the increasing trend of optical-based densities with redshift. By conducting a JWST and ALMA joint analysis using emission lines detected with both telescopes, we find that the observed FIR [O iii] 52 and 88 μm luminosities are too high to be explained by the optical-based densities at which they would be significantly collisionally de-excited. Instead, a two-zone model with distinct high- and low-density regions is required to reproduce all observed lines, indicating that FIR [O iii] emission arises predominantly from low-density gas, while the optical [O iii] and [O ii] lines trace both regions. We further demonstrate that the direct-Te method can sometimes significantly underestimate metallicities up to 0.8 dex due to the presence of the low-density gas not fully traced by optical lines alone, highlighting the importance of combining optical and FIR lines to accurately determine gas-phase metallicities in the early Universe.
Journal Article
Structural and In silico safety evaluation of asciminib degradation products with a validated stability indicating HPLC method for genotoxic impurity determination
2026
This study aimed to develop and validate an efficient and robust analytical HPLC method for the resolution and quantification of asciminib and its genotoxic impurities along with isolation and characterization of stress degradation products (DPs). Various method optimization studies were performed for development of analytical method for the analysis of asciminib and its genotoxic impurities. The DPs were characterized through LC-MS/MS and NMR spectroscopy. Further, an in-silico software assisted tools were utilized for the assessment pharmacokinetic and toxicological profile of DPs. The optimization proved Kinetex C18 (250 mm × 4.6 mm, 5 μm) column was ideal for the resolution of analytes with 0.7 mL/min flow of 0.01% formic acid buffer (pH 3.9) and acetonitrile and 276 nm wavelength. The forced degradation studies show significant degradation occurred under acidic (12.36%), basic (3.54%), oxidative (10.63%), and UV (7.28%) stress. This stress study leads to the formation of 5 DPs in acid, one DP in base, three DPs in peroxide, one DP in UV light stress study. The formed DPs were isolated through preparative HPLC and structural elucidation of DPs was conducted using LC-MS/MS and NMR spectroscopy. The toxicity and ADME profiles of the identified DPs reveal that some DPs exhibit potential hepatotoxicity, nephrotoxicity, and neurotoxicity with significant variations in toxicological and pharmacokinetic properties. The results underscore the importance of understanding the stability, toxicity, and pharmacokinetics of asciminib and its DPs for regulatory and pharmaceutical applications.
Journal Article
Genetic Algorithm-Based Optimization of Clustering Algorithms for the Healthy Aging Dataset
by
Bhattacharjee, Vandana
,
Kumar, Sanjay
,
Gupta, Mansi
in
Aging
,
Approximation
,
Cluster analysis
2024
Clustering is a crucial and, at the same time, challenging task in several application domains. It is important to incorporate the optimum feature finding into our clustering algorithms for better exploration of features and to draw meaningful conclusions, but this is difficult when there is no or little information about the importance or relevance of features. To tackle this task in an efficient manner, we employ the natural evolution process inherent in genetic algorithms (GAs) to find the optimum features for clustering the healthy aging dataset. To empirically verify the findings, genetic algorithms were combined with a number of clustering algorithms, including partitional, density-based, and agglomerative clustering algorithms. A variant of the popular KMeans algorithm, named KMeans++, gave the best performance on all performance metrics when combined with GAs.
Journal Article
Nr4a1 and Nr4a3 redundantly control clonal deletion and contribute to an anergy-like transcriptome in auto-reactive thymocytes to impose tolerance in mice
2025
The Nr4a nuclear hormone receptors are transcriptionally upregulated in response to antigen recognition by the T cell receptor (TCR) in the thymus and are implicated in clonal deletion, but the mechanisms by which they operate are not clear. Moreover, their role in central tolerance is obscured by redundancy among the Nr4a family members and by their reported functions in Treg generation and maintenance. Here we take advantage of competitive bone marrow chimeras and the OT-II/RIPmOVA model to show that
Nr4a1
and
Nr4a3
are essential for the upregulation of
Bcl2l11
/BIM and thymic clonal deletion by self-antigen. Importantly, thymocytes lacking
Nr4a1/3
acquire an anergy-like signature after escaping clonal deletion and Treg lineage diversion. We further show that the Nr4a family helps mediate a broad transcriptional program in self-reactive thymocytes that resembles anergy and may operate at the margins of canonical thymic tolerance mechanisms to restrain self-reactive T cells after thymic egress.
The Nr4a family of nuclear receptors has been implicated in thymocyte central tolerance via clonal deletion and regulatory T cell induction. Here the authors show, using mouse bone marrow chimeras, that Nr4a1 and Nr4a3 are also redundantly required for Bcl211/BIM induction and contribute to an anergy-like transcriptome in auto-reactive thymocytes.
Journal Article
Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development
2013
Heparan sulfate Proteoglycans (HSPG) are ubiquitous molecules with indispensable functions in various biological processes. Glypicans are a family of HSPG's, characterized by a Gpi-anchor which directs them to the cell surface and/or extracellular matrix where they regulate growth factor signaling during development and disease. We report the identification and expression pattern of glypican genes from zebrafish. The zebrafish genome contains 10 glypican homologs, as opposed to six in mammals, which are highly conserved and are phylogenetically related to the mammalian genes. Some of the fish glypicans like Gpc1a, Gpc3, Gpc4, Gpc6a and Gpc6b show conserved synteny with their mammalian cognate genes. Many glypicans are expressed during the gastrulation stage, but their expression becomes more tissue specific and defined during somitogenesis stages, particularly in the developing central nervous system. Existence of multiple glypican orthologs in fish with diverse expression pattern suggests highly specialized and/or redundant function of these genes during embryonic development.
Journal Article
Serum metabolic disparity between patients with lymph node tuberculosis and patients with sarcoidosis: towards differential diagnosis
2025
Background and hypothesis
Sarcoidosis (SAR) and lymph-node tuberculosis (LNTB) are granulomatous diseases that present diagnostic challenges, especially in TB-endemic regions. We hypothesized that serum-metabolic profiles would help in differentiating SARs from LNTBs.
Objective
This study aimed to identify serum metabolic biomarkers to distinguish SAR from LNTB using NMR-based metabolomics analysis.
Methods
Serum samples were collected from 26 SAR and 22 LNTB patients. The serum metabolic profiles were measured using 800 MHz NMR spectroscopy and quantified using the commercial software CHENOMX. The serum metabolic profiles were compared using multivariate partial least squares discriminant analysis (PLS-DA), and potential discriminatory metabolites were identified using variable importance in projection (VIP) scores and subsequently evaluated for statistical significance using a volcano plot. The diagnostic potential of the discriminatory metabolites was evaluated using receiver operating characteristic (ROC) curve analysis.
Results
PLS-DA demonstrated significant metabolic disparity between the SAR and LNTB groups. The key metabolic features identified included elevated levels of glutamate, pyroglutamate, acetate, and leucine and a decreased glutamate-to-glutamine ratio (EQR) and decreased levels of glutamine, pyruvate, and myo-inositol in TB patients. These metabolic changes suggest that TB-infection involves activated glutaminolysis and elevated host lipid metabolism. ROC curve analysis revealed several metabolites with high diagnostic potential (AUC > 0.8), including glutamate, pyroglutamate, and glutamine (AUC > 0.98).
Conclusion
In conclusion, this study underscores the potential of serum metabolic profiling as a noninvasive tool for distinguishing SARs from LNTBs. However, further studies are imperative to validate these findings on independent patient cohorts and to facilitate their integration into routine clinical practice.
Journal Article
Environmental Factors Affecting Monoterpene Emissions from Terrestrial Vegetation
by
Clavijo McCormick, Andrea
,
Malik, Tanzil Gaffar
,
Gupta, Mansi
in
abiotic factors
,
Air temperature
,
Ambient temperature
2023
Monoterpenes are volatile organic compounds that play important roles in atmospheric chemistry, plant physiology, communication, and defense. This review compiles the monoterpene emission flux data reported for different regions and plant species and highlights the role of abiotic environmental factors in controlling the emissions of biogenic monoterpenes and their emission fluxes for terrestrial plant species (including seasonal variations). Previous studies have demonstrated the role and importance of ambient air temperature and light in controlling monoterpene emissions, likely contributing to higher monoterpene emissions during the summer season in temperate regions. In addition to light and temperature dependence, other important environmental variables such as carbon dioxide (CO2), ozone (O3), soil moisture, and nutrient availability are also known to influence monoterpene emissions rates, but the information available is still limited. Throughout the paper, we identify knowledge gaps and provide recommendations for future studies.
Journal Article
Utility of Machine Learning Technology in Microbial Identification: A Critical Review
2023
Microorganisms are ubiquitous and have far-reaching effects on human life. Since their discovery in the 19th century, microorganisms have fascinated biologists. Microbes play a crucial role in the material and elemental cycles of the natural world. Growing own microbes for research purposes requires a significant time and financial investment. On the other hand, high-throughput sequencing technology cannot advance at the same clip as the culture method. The area of microbiology has made substantial use of machine learning (ML) methods to tackle this problem.Classification and prediction have emerged as key avenues for advancing microbial community research in computational biology. This research compares the advantages and disadvantages of using different algorithmic approaches in four subfields of microbiology (pathogen and epidemiology; microbial ecology; drug development; microbiome and taxonomy).
Journal Article
Revealing the Demonstration of Blockchain and Implementing Scope in COVID-19 Outbreak
2021
Blockchain is gaining attention since its development due to its features like immutability, transparency, decentralization. It can also be used as decentralized storage. Blockchain offers a wide range of digital services both in financial and nonfinancial sectors. In this paper, we discuss the basic concepts and terminologies associated with blockchain and discuss the application areas both in financial and non- financial sectors such as Digital voting, Digital identity, Education, etc. and discuss the existing framework in these areas, also the progress and challenges of global acquisition. The main highlight of this paper is COVID-19 and we discussed existing solutions to fight the COVID-19 pandemic by using such technology. This survey paper will be helpful for a data scientist as well as researchers to explore in the area COVID-19.
Journal Article
Development of an Artificial Intelligence–Guided Citizen-Centric Predictive Model for the Uptake of Maternal Health Services Among Pregnant Women Living in Urban Slum Settings in India: Protocol for a Cross-sectional Study With a Mixed Methods Design
by
Shrivastava, Rahul
,
Singhal, Manmohan
,
Gupta, Mansi
in
Artificial intelligence
,
Cross-sectional studies
,
Data collection
2023
Pregnant women are considered a \"high-risk\" group with limited access to health facilities in urban slums in India. Barriers to using health services appropriately may lead to maternal and child mortality, morbidity, low birth weight, and children with stunted growth. With the increase in the use of artificial intelligence (AI) and machine learning in the health sector, we plan to develop a predictive model that can enable substantial uptake of maternal health services and improvements in adverse pregnancy health care outcomes from early diagnostics to treatment in urban slum settings.
The objective of our study is to develop and evaluate the AI-guided citizen-centric platform that will support the uptake of maternal health services among pregnant women seeking antenatal care living in urban slum settings.
We will conduct a cross-sectional study using a mixed methods approach to enroll 225 pregnant women aged 18-44 years, living in the urban slums of Delhi for more than 6 months, seeking antenatal care, and who have smartphones. Quantitative and qualitative data will be collected using an Open Data Kit Android-based tool. Variables gathered will include sociodemographics, clinical history, pregnancy history, dietary history, COVID-19 history, health care facility data, socioeconomic status, and pregnancy outcomes. All data gathered will be aggregated into a common database. We will use AI to predict the early at-risk pregnancy outcomes (in terms of the type of delivery method, term, and related complications) depending on the needs of the beneficiaries translating into effective service-delivery improvements in enhancing the use of maternal health services among pregnant women seeking antenatal care. The proposed research will help policy makers to prioritize resource planning, resource allocation, and the development of programs and policies to enhance maternal health outcomes. The academic research study has received ethical approval from the University Research Ethics Committee of Dehradun Institute of Technology (DIT) University, Dehradun, India.
The study was approved by the University Research Ethics Committee of DIT University, Dehradun, on July 4, 2021. Enrollment of the eligible participants will begin by April 2022 followed by the development of the predictive model by October 2022 till January 2023. The proposed AI-guided citizen-centric tool will be designed, developed, implemented, and evaluated using principles of human-centered design that will help to predict early at-risk pregnancy outcomes.
The proposed internet-enabled AI-guided prediction model will help identify the potential risk associated with pregnancies and enhance the uptake of maternal health services among those seeking antenatal care for safer deliveries. We will explore the scalability of the proposed platform up to different geographic locations for adoption for similar and other health conditions.
PRR1-10.2196/35452.
Journal Article