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result(s) for
"Gupta, Sanjay"
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Identification and impact of stable prognostic biochemical markers for cold-induced sweetening resistance on selection efficiency in potato (Solanum tuberosum L.) breeding programs
2019
Biochemical markers for cold-induced sweetening (CIS) resistance were tested for their stability over years and their use in selection of parents for crossing to achieve high selection efficiency in potato breeding programs. Two regulatory enzymes directly associated with reducing sugar (RS) accumulation during potato tubers cold storage were tested as a predictor for CIS resistance. These enzymes were studied in 33 potato clones from various breeding programs over four years. Clones with the presence of A-II isozymes of UDP-glucose pyrophosphorylase (UGPase) and low activity of vacuolar acid invertase (VAcInv) enzyme had increased resistance to cold-induced sweetening (CIS). Depending on the levels of these enzymes, clones were divided into class A, class B and class C. Clones categorized as class A had average RS of 0.73 mg per g FW after six months at 5.5°C storage. Class B and C had average RS of 1.15 and 3.80 mg per g FW respectively. The enzyme activity was closely associated with RS accumulation over long-term cold storage. The biochemical markers were found to be stable over the years. Repeated-measure analysis showed 75% chance of maintaining class from one year to the next and a 25% chance of switching, No clone switched between class A and class C, even across all four years. Application of these biochemical markers can identify clones with CIS resistance early in the selection process. Biochemical markers were used to select parents for crossing and six families were established. Results showed that with both parents from class A, 95% of their offspring had desirable glucose levels and chip color, which dropped to 52% when one parent was from class A and other from class B. These results suggest that two regulatory enzymes, i.e., UGPase and VAcInv, can be used as stable prognostic biochemical markers for CIS resistance for precise parent selection resulting in progenies with significantly higher percentage of clones with acceptable processing quality.
Journal Article
Heavy metal contamination in the complete stretch of Yamuna river: A fuzzy logic approach for comprehensive health risk assessment
by
Hussain, Jakir
,
Chabukdhara, Mayuri
,
Nasr, Mahmoud
in
Anthropogenic factors
,
Arsenic
,
Biology and Life Sciences
2022
River Yamuna is one of the most sacred major tributaries of river Ganga. This study aimed to assess the level of heavy metals in monsoon and non-monsoon season in river Yamuna in Uttar Pradesh, India and to assess the possible source of contamination and its associated health risk. Except for iron (Fe), the mean levels of all metals were within drinking water safe limits in both seasons. Except for chromium (Cr), lower values were observed for other metals in the monsoon season could be attributed dilution effect. Multivariate analysis indicated that both geogenic and anthropogenic sources contribute to heavy metals in river Yamuna in monsoon and non-monsoon seasons. The health risk in terms of hazard index (HI) and fuzzy-logic hazard index (FHI) demonstrated that both HI and FHI values among children exceeded the safe limit in most of the sites in non-monsoon seasons and in few in monsoon season. For adults, HI and FHI values were within safe limit.
Journal Article
How does an investor prioritize ESG factors in India? An assessment based on fuzzy AHP
2023
PurposeThe primary objective of the study is to discover the most prominent criteria and sub-criteria among environmental issues, social dimensions and corporate governance factors that may impact individual equity investors' investment decisions.Design/methodology/approachThe present study collected data from 438 individual equity investors from the North Indian region. To achieve the objectives of the study, a fuzzy analytic hierarchy process (Fuzzy AHP) was applied. The key considerations of the study were environmental, social and governance (ESG) factors.FindingsThe governance criterion was discovered to be the most significant factor influencing individual equity investors' investment decisions among the three ESG factors, followed by environmental criteria, while social criteria were shown to be the least influential.Research limitations/implicationsThe present study solely looked at ESG issues as drivers of stock investors' investment decisions. In the current world, however, many other factors, including behavioral biases, accounting information, ownership structure and fundamental analysis, can have a substantial influence on investors' investment decisions.Practical implicationsThe study's findings widen the theoretical contribution in the field of responsible investment by asserting how ESG factors influence investors' investment decisions in the equity market. From a practical standpoint, this study applies to retail and institutional investors, portfolio managers, financial advisors, market regulators, corporations and society at large.Originality/valueTo the best of authors knowledge, no attempt has been made to prioritize the ESG issues that impact the investment decisions of individual equity investors. Ergo, this study contributes to the existing literature on socially responsible investment.
Journal Article
Heavy metals contamination in sediments of Bharalu river, Guwahati, Assam, India: A tributary of river Brahmaputra
by
Brahma, Pinki
,
Tyagi, Neha
,
Bhuyan, Rajashree
in
Anthropogenic factors
,
Aquatic ecosystems
,
Biology and Life Sciences
2023
This study aimed to assess heavy metals in the surface sediments of the Bharalu river, India. Metal concentrations ranged from 6.65−54.6 mg/kg for Ni, 25.2−250.0 mg/kg for Zn, 83.3−139.1 mg/kg for Pb, and 11940.0−31250.0 mg/kg for Fe. The level of metal contamination was assessed using sediment quality guidelines, geo-accumulation index (I geo ), enrichment factor (EF), pollution Load Index (PLI),Nemerow’s pollution index (PIN), and potential ecological risk index. Pb exceeded the sediment quality guidelines at all sites indicating a potential threat to the river ecosystem. (I geo ) and EF also showed moderate to severe enrichment for Pb. Potential ecological risk (RI) showed low risk in the sediments, and Pb is the major contributor to ecological risk. Overall, pollution indices revealed comparably higher contamination of the sediments in the downstream sites than in the upstream site. PCA and correlation matrix analysis indicated both anthropogenic and natural origins for metals. Among anthropogenic sources, urban discharges and waste dumping could be mainly attributed to metal contamination in the river sediments. These findings may aid in developing future river management methods explicitly aimed at tackling heavy metal pollution to prevent further damage to the river ecosystem.
Journal Article
Irreversible electroporation reverses resistance to immune checkpoint blockade in pancreatic cancer
2019
Immunotherapy has only limited efficacy against pancreatic ductal adenocarcinoma (PDAC) due to the presence of an immunosuppressive tumor-associated stroma. Here, we demonstrate an effective modulation of that stroma by irreversible electroporation (IRE), a local ablation technique that has received regulatory approval in the United States. IRE induces immunogenic cell death, activates dendritic cells, and alleviates stroma-induced immunosuppression without depleting tumor-restraining collagen. The combination of IRE and anti-programmed cell death protein 1 (anti-PD1) immune checkpoint blockade promotes selective tumor infiltration by CD8
+
T cells and significantly prolongs survival in a murine orthotopic PDAC model with a long-term memory immune response. Our results suggest that IRE is a promising approach to potentiate the efficacy of immune checkpoint blockade in PDAC.
Irreversible electroporation (IRE) has been approved as ablation therapy for pancreatic ductal adenocarcinoma (PDAC). Here, the authors show that, in mouse models, IRE reverses the immunosuppressive microenvironment of PDAC resulting in increased and durable response when combined with PD1 checkpoint inhibition therapy.
Journal Article
Improving Potato Yield Prediction by Combining Cultivar Information and UAV Remote Sensing Data Using Machine Learning
by
Rosen, Carl J.
,
Wang, Chongyang
,
Huang, Yanbo
in
Agricultural production
,
Algorithms
,
Bandwidths
2021
Accurate high-resolution yield maps are essential for identifying spatial yield variability patterns, determining key factors influencing yield variability, and providing site-specific management insights in precision agriculture. Cultivar differences can significantly influence potato (Solanum tuberosum L.) tuber yield prediction using remote sensing technologies. The objective of this study was to improve potato yield prediction using unmanned aerial vehicle (UAV) remote sensing by incorporating cultivar information with machine learning methods. Small plot experiments involving different cultivars and nitrogen (N) rates were conducted in 2018 and 2019. UAV-based multi-spectral images were collected throughout the growing season. Machine learning models, i.e., random forest regression (RFR) and support vector regression (SVR), were used to combine different vegetation indices with cultivar information. It was found that UAV-based spectral data from the early growing season at the tuber initiation stage (late June) were more correlated with potato marketable yield than the spectral data from the later growing season at the tuber maturation stage. However, the best performing vegetation indices and the best timing for potato yield prediction varied with cultivars. The performance of the RFR and SVR models using only remote sensing data was unsatisfactory (R2 = 0.48–0.51 for validation) but was significantly improved when cultivar information was incorporated (R2 = 0.75–0.79 for validation). It is concluded that combining high spatial-resolution UAV images and cultivar information using machine learning algorithms can significantly improve potato yield prediction than methods without using cultivar information. More studies are needed to improve potato yield prediction using more detailed cultivar information, soil and landscape variables, and management information, as well as more advanced machine learning models.
Journal Article
Spatio-temporal Trend Analysis of Climatic Variables over Jharkhand, India
by
Gupta, Sanjay K.
,
Gupta, Nitesh
,
Banerjee, Ahin
in
Annual precipitation
,
Climate
,
Climate change
2021
Time-series data for climatic variables of Jharkhand state, India were analyzed to assess the spatio-temporal variation and fluctuation over the study period of 118 years (1901–2018). Mann–Kendall (MK), Sequential Mann–Kendall (SQMK), and Sen’s slope tests were applied to determine the trend of precipitation, temperature maxima–minima, and Potential Evapotranspiration (PET) time-series data acquired after removal of serial autocorrelation called prewhitening. Minimum and maximum temperature revealed insignificant variation during pre-monsoon and monsoon season, while a remarkable increasing trend was observed for post-monsoon and winter season; however, increasing trend was obtained for annual maxima–minima. The average minimum temperature fluctuates with an increase of 0.59–0.41 ºC to a decrease of 0.79–0.39 ºC, whereas average maximum temperature fluctuates with an increase of 1–1.5 ºC to decrease of 0.82–0.14 ºC. Notably, decreasing trend of 1.09–2.3 mm/year was observed for precipitation during monsoon season, whereas decreasing trend of 1.2–2.4 mm/year was found for annual precipitation, and similarly for PET, significant decreasing trend of 0.0003–0.0012 mm/year was found for monsoon season and annually. However, the underlying persistence effect observed in all seasons and throughout the year for all climatic parameters resulted in the time-series with low-frequency fluctuations. SQMK method exhibits the periodic fluctuation of trends, which are more noticeable in pre-monsoon and monsoon season. An understanding of these alterations in pattern of climatic variables is important for planning and management of water resources and sustainable agriculture.
Journal Article
Chemical characterization and quantitativ e assessment of source-specific health risk of trace metals in PM1.0 at a road site of Delhi, India
2018
This study presents the concentration of submicron aerosol (PM
1.0
) collected during November, 2009 to March, 2010 at two road sites near the Indian Institute of Technology Delhi campus. In winter, PM
1.0
composed 83% of PM
2.5
indicating the dominance of combustion activity-generated particles. Principal component analysis (PCA) proved secondary aerosol formation as a dominant process in enhancing aerosol concentration at a receptor site along with biomass burning, vehicle exhaust, road dust, engine and tire tear wear, and secondary ammonia. The non-carcinogenic and excess cancer risk for adults and children were estimated for trace element data set available for road site and at elevated site from another parallel work. The decrease in average hazard quotient (HQ) for children and adults was estimated in following order: Mn > Cr > Ni > Pb > Zn > Cu both at road and elevated site. For children, the mean HQs were observed in safe level for Cu, Ni, Zn, and Pb; however, values exceeded safe limit for Cr and Mn at road site. The average highest hazard index values for children and adults were estimated as 22 and 10, respectively, for road site and 7 and 3 for elevated site. The road site average excess cancer risk (ECR) risk of Cr and Ni was close to tolerable limit (10
−4
) for adults and it was 13–16 times higher than the safe limit (10
−6
) for children. The ECR of Ni for adults and children was 102 and 14 times higher at road site compared to elevated site. Overall, the observed ECR values far exceed the acceptable level.
Journal Article
Dietary Flavones as Dual Inhibitors of DNA Methyltransferases and Histone Methyltransferases
2016
Methylation of DNA and histone proteins are mutually involved in the epigenetic regulation of gene expression mediated by DNA methyltransferases (DNMTs) and histone methyltransferases (HMTs). DNMTs methylate cytosine residues within gene promoters, whereas HMTs catalyze the transfer of methyl groups to lysine and arginine residues of histone proteins, thus causing chromatin condensation and transcriptional repression, which play an important role in the pathogenesis of cancer. The potential reversibility of epigenetic alterations has encouraged the development of dual pharmacologic inhibitors of DNA and histone methylation as anticancer therapeutics. Dietary flavones can affect epigenetic modifications that accumulate over time and have shown anticancer properties, which are undefined. Through DNA binding and in silico protein-ligand docking studies with plant flavones viz. Apigenin, Chrysin and Luteolin, the effect of flavones on DNA and histone methylation was assessed. Spectroscopic analysis of flavones with calf-thymus DNA revealed intercalation as the dominant binding mode, with specific binding to a GC-rich sequence in the DNA duplex. A virtual screening approach using a model of the catalytic site of DNMT and EZH2 demonstrated that plant flavones are tethered at both ends inside the catalytic pocket of DNMT and EZH2 by means of hydrogen bonding. Epigenetic studies performed with flavones exhibited a decrease in DNMT enzyme activity and a reversal of the hypermethylation of cytosine bases in the DNA and prevented cytosine methylation in the GC-rich promoter sequence incubated with the M.SssI enzyme. Furthermore, a marked decrease in HMT activity and a decrease in EZH2 protein expression and trimethylation of H3K27 were noted in histones isolated from cancer cells treated with plant flavones. Our results suggest that dietary flavones can alter DNMT and HMT activities and the methylation of DNA and histone proteins that regulate epigenetic modifications, thus providing a significant anticancer effect by altering epigenetic processes involved in the development of cancer.
Journal Article
Antibacterial Activity, Cytotoxicity, and the Mechanism of Action of Bacteriocin from Bacillus subtilis GAS101
2018
Objective: The aim of this study was to purify and characterize bacteriocin from the soil isolate Bacillus subtilis GAS101, and to determine its antimicrobial as well as antibiofilm potential. The purified bacteriocin was further analyzed and evaluated for mammalian cell cytotoxicity and the possible mode of action. Material and Methods: Bacteriocin from B. subtilis GAS101 (an animal husbandry soil isolate) was partially purified and checked for antimicrobial and antibiofilm activity against gram-positive and gram-negative bacteria. The molecular weight of bacteriocin was determined using tricine SDS-PAGE gel. The stability of bacteriocin was investigated at various temperatures and pH levels, and its sensitivity towards 8 enzymes and 6 chemicals was determined. Cytotoxicity analysis was performed on a Vero cell line by a tetrazolium dye-based assay. Scanning electron microscopy (SEM) of bacteriocin-treated bacteria was carried out to determine the possible mode of action. Results: Bacteriocin from B. subtilis GAS101 was a potential inhibitor of both the indicator organisms (Staphylococcus epidermidis and Escherichia coli), and had a molecular weight of approximately 6.5 kDa. An in situ gel assay showed a zone of inhibition corresponding to the estimated protein band size. Bacteriocin was stable and showed antibacterial activity in broad ranges of temperature (30–121°C) and pH (2–12). It was sensitive to 4 proteolytic enzymes, which indicated its proteinaceous nature. Bacteriocin showed > 70% cell viability on the mammalian Vero cell line. SEM depicted that the bacteriocin was able to disrupt the bacterial cell membrane as its probable mode of action. Conclusion: Thermostable and pH-tolerant bacteriocin from B. subtilis GAS101, of about 6.5 kDa, showed broad-spectrum antimicrobial and antibiofilm activity.
Journal Article