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result(s) for
"Gupta, Shailesh Kumar"
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C18ORF32 modulates lipid droplet secretion via secretory autophagy and restrains hepatic steatosis in vivo
by
Gupta, Shailesh Kumar
,
Mathuria, Yogendra Pratap
,
Kumar, Abhishek
in
Autophagy
,
Autophagy (Cytology)
,
Biomedical and Life Sciences
2025
Background
Lipid droplets (LDs) are essential for maintaining cellular homeostasis by storing excess lipids, but regulation of their cellular level is crucial to prevent lipotoxicity under normal conditions.
Methods and results
In this study, we identified C18ORF32 as a key player in lipid droplet secretion through secretory autophagy pathway. In a high-throughput imaging-based organellar screening, we found that C18ORF32 primarily localizes in autophagosomes and in the endoplasmic reticulum. C18ORF32 interacts with lipid droplets via its N-terminal helix: an amphiphilic region binds to the monolayer membrane leaflet of the LD, while a hydrophobic segment embeds in the droplet’s core, ensuring stable anchoring. Mutations of the clustered aromatic amino acids of the N-terminal amphiphilic region disrupt the proper folding and LD binding of C18ORF32. Additionally, C18ORF32 associates with secretory autophagosomes by binding to C-terminal coiled-coil region of SEC22B through its unstructured C-terminal region. Knockdown of
C18ORF32
impairs LD secretion, leading to increased intracellular LD accumulation and reduced extracellular release of triacylglycerols, suggesting C18ORF32’s critical role in secretory LD turnover. In vivo knockdown of
C18ORF32
caused NASH-like increased hepatic lipid retention and decreased circulating free fatty acids, indicating impaired lipid droplet export via secretory autophagy.
Conclusions
Our data suggest that C18ORF32 promotes the fusion of lipid droplet membranes with secretory autophagosomes, facilitating the release of LDs to extracellular space, thereby mitigating lipotoxicity under physiological conditions. These findings reveal a novel mechanism by which cells regulate lipid droplet homeostasis through secretory autophagy, with C18ORF32 acting as a critical mediator in lipid droplet trafficking and secretion.
Journal Article
Variants in MTNAP1 underlie a neurodegenerative disorder by impairing mitochondrial stability
2026
Mutations in genes encoding mitochondrial proteins are increasingly recognized as a major cause of neurodegenerative disorders, owing to the role of mitochondria in neuronal energy metabolism and signaling. Here, we investigate
MTNAP1
(mitochondrial nucleoid-associated protein 1) as a novel gene associated with an autosomal recessive neurodevelopmental disorder characterized by progressive cerebral and cerebellar atrophy. Three affected probands from two unrelated families presented with global developmental delay, ataxia, spasticity, seizures, and progressive neurological decline, with MRI revealing generalized cerebral and cerebellar volume loss and thinning of the corpus callosum. Trio-based exome sequencing uncovered two ultra-rare, biallelic loss-of-function variants in
MTNAP1
: a homozygous missense variant (p.G553R) in two siblings and a homozygous nonsense variant (p.Y13X) in an unrelated proband. Functional studies in proband-derived fibroblasts and
MTNAP1
-silenced neuronal cells implicated profound mitochondrial fragmentation, reduced oxidative phosphorylation capacity, increased reactive oxygen species accumulation, and premature senescence-like stress responses. Structural modeling and biophysical analyses revealed that the p.G553R variant destabilizes the MTNAP1 fold, disrupts its DNA- and membrane-binding interfaces, and induces aberrant aggregation, leading to loss of mitochondrial integrity. Collectively, our findings suggest MTNAP1 as a crucial regulator of mitochondrial homeostasis and identify pathogenic
MTNAP1
variants as the cause of a novel, progressive neurodegenerative disorder.
Journal Article
Application of machine learning approaches in the computation of energy dissipation over rectangular stepped spillway
by
Gupta, Shailesh Kumar
,
Kaushik, Vijay
,
Pujari, Saurabh
in
Algorithms
,
baffle configurations
,
Baffles
2023
The stepped spillway of a dam is a crucial element that serves multiple purposes in the field of river engineering. Research related to flood control necessitates an investigation into the dissipation of energy over stepped spillways. Previous research has been conducted on stepped spillways in the absence of baffles, utilizing diverse methodologies. This study employs machine learning techniques, specifically support vector machine (SVM) and regression tree (RT), to assess the energy dissipation of rectangular stepped spillways incorporating baffles arranged in different configurations and operating at varying channel slopes. Empirical evidence suggests that energy dissipation is more pronounced in channels with flat slopes and increases proportionally with the quantity of baffles present. Statistical measures are employed to validate the constructed models in the experimental investigation, with the aim of evaluating the efficacy and performance of the proposed model. The findings indicate that the SVM model proposed in this study accurately forecasted the energy dissipation, in contrast to both RT and the conventional method. This study confirms the applicability of machine learning techniques in the relevant field. Notably, it provides a unique contribution by predicting energy dissipation in stepped spillways with baffle configurations.
Journal Article
Relationship Between Hepatitis B Viral Load and Laboratory Parameters in HBsAg-Positive Patients: Insights from the Sub-Himalayan Region
by
Negi, Shailender
,
Gupta, Shailesh Kumar
,
Negi, Ashish
in
Age groups
,
Antigens
,
blood-borne infection
2025
Introduction: Hepatitis B is the most prevalent virus that causes severe liver infection worldwide. According to the current guidelines, the HBV viral load and other factors can help in treatment decisions. Therefore, the present study explores the relationship between the HBV viral load and blood-based laboratory parameters. Methods: The HBV viral load was evaluated in blood samples from 159 HBsAg-positive patients (ICT-positive). The viral load was categorized as high (above 200,000 IU/mL), moderate (between 2000 and 200,000 IU/mL), or low (below 2000 IU/mL). The viral load was then compared with laboratory parameters. Results: A significant association was observed between the Hepatitis B viral load and the patient’s age (p < 0.01). The males showed a substantially higher viral load, with 29.2% of the male patients exhibiting elevated levels, compared to 11% of the females. A statistically significant correlation was found between the viral load and liver enzymes, specifically AST (p < 0.005) and ALT (p < 0.04), as well as calcium (p < 0.01). Notably, the elevated ALT and AST levels were more pronounced in the patients with moderate and high viral loads, suggesting a potential link to liver dysfunction. A remarkable insight uncovered in our study revolves around the notable increase in the serum calcium levels (p < 0.01). Conclusions: The AST, ALT, and serum calcium levels were the most altered parameters with high HBV viral load. Though limited reports are available on altered serum calcium levels, they could serve as potential laboratory markers for assessing disease progression in HBV infection. Moreover, focusing on potential therapies to normalize the AST, ALT, and serum calcium levels could offer promising avenues for combating HBV infection.
Journal Article
Sex-related differences in hemato-biochemical indices of adult Vanaraja chickens during summer and winter seasons
by
Panigrahy, Kuldeep Kumar
,
Gupta, Shailesh Kumar
,
Sethy, Kamdev
in
Alanine
,
Alanine transaminase
,
Albumin
2017
The objective of this study was to evaluate the changes in hemato-biochemical indices in male and female Vanaraja chickens under tropical environment during summer and winter season.
A total of 120 day-old sexed Vanaraja chicks were selected as experimental chickens and distributed equally in two groups having 60 female and 60 male chickens in each group, respectively. The experiment was continued for 8 weeks (56 days) and both male and female chickens were slaughtered by cervical dislocation method. All parameters were estimated at the end of the experiment in both seasons.
Male had higher blood glucose, Ca and P level. Blood glucose level significantly (p<0.05) reduced in summer. Female had higher total protein, albumin, globulin, and albumin/globulin ratio. Alanine aminotransferase and aspartate aminotransferase enzyme concentration were significantly (p<0.05) higher in summer. Total erythrocyte count, total leukocyte count, hemoglobin (Hb), Hb/lymphocyte ratio, and packed cell volume were significantly (p<0.05) higher in males. Mean corpuscular volume and mean corpuscular Hb were significantly (p<0.05) higher in females.
Sex of chickens had a significant (p<0.05) effect on different parameters whereas season had nonsignificant (p>0.05) effect in most of the observed parameters. Hence, Vanaraja chickens are adaptable to local tropical climate and can be reared efficiently as backyard poultry.
Journal Article
Studies of the macroscopic and microscopic morphology (hippocampus) of brain in Vencobb broiler
by
Gupta, Shailesh Kumar
,
Shinde, Kuladip Prakash
,
Sethy, Kamdev
in
capillaries
,
hemisphere
,
hippocampus
2016
The aim of this study was to study the anatomy of different parts of brain and histology of hippocampus of Vencobb broiler chicken.
A 12 adult experimental birds were sacrificed by cervical dislocation. After separation of the brain, gross anatomy features were studied. Brain tissue was fixed in 10% buffered neutral formalin for 2-3 days, and then routine dehydration process in ascending grades of ethyl alcohol was done. After xylene cleaning, paraffin impregnation was prepared. Paraffin blocks were cut, and slides were stained by Harris hematoxylin and eosin. Photography was carried out both under lower (×10) and higher (×40) magnifications.
The brain structure (dorsal view) of Vencobb bird resembled the outline of a playing card symbol of a \"spade.\" The brain subdivisions are cerebrum, cerebellum, and medulla oblongata. Cerebrum was devoid of usual convolutions (elevations), gyri, depressions (grooves), and sulci. The cerebral hemispheres were tightly apposed along a median sulcus called interhemispheric fissure and cerebrum and cerebellum were separated by a small transverse fissure. The olfactory bulb was small structures, and the pineal body was clearly visible. The optic lobes were partially hidden under cerebral hemispheres, but laterally, it was large, prominent rounded or spherical bodies of the midbrain. The hippocampal area appeared as dorso-medial protrusion. Different types of neurons were distinguished in the hippocampus were pyramidal neurons, pyramidal-like neurons, and multipolar neurons, etc. There was rich vascularization in the form of blood capillaries throughout the hippocampus.
Cerebrum was pear shaped and largest part of the brain. Cerebrum hemisphere was smooth devoid of convolutions, gyri, and depressions, but in the surface of cerebellum, there was the presence of a number of transverse depression (grooves) and sulci subdividing into many folds. Olfactory bulb was poorly developed, whereas optic lobes were rounded and large. The exact boundary line of the hippocampus was not discernable. In hippocampus histology, two categories of neuron local circuit neurons and projection neurons, high vascularization and epididymal lining of lateral ventricle were observed. Hippocampal neurons were comparatively larger without any distinct layers. The afferent neurons projected to the medium septum.
Journal Article
Effect of chemical modification on hydraulic conductivity of stratified porous media
by
Gupta, Shailesh Kumar
,
Shrivastava, Amit Kumar
,
Kumar, Munendra
in
Artificial neural networks
,
Chemical modification
,
Flow system
2024
Understanding hydraulic conductivity is essential in porous media as it dictates the capacity of fluids to permeate through these substances. This research investigated the impact of chemical modification using fly ash on hydraulic conductivity. The coefficient of hydraulic conductivity along the bedding plane at different angles of orientations was predicted by employing machine learning techniques such as gene expression programming (GEP), artificial neural networks (ANNs), and regression tree (RT), considering various influencing parameters. As the amount of fly ash in the porous medium rises, the hydraulic conductivity decreases. The statistical results demonstrate that the proposed ANN model effectively forecasted the horizontal hydraulic conductivity. It achieved the highest R2 value (0.989), the lowest mean absolute percentage error value (5.772), the lowest scatter index value (0.040), and the lowest Akaike Information Criterion value (−2,359.914) compared to the GEP, RT, and previously established approaches. Moreover, a novel equation has been proposed for determining horizontal hydraulic conductivity, which can be used for any stratified medium, distinguishing this work from previous ones. These findings can inform global practices in mitigating groundwater contamination, enhancing irrigation efficiency, and improving the design of subsurface fluid flow systems, making it a valuable contribution to both academic and practical applications worldwide.
Journal Article
Simulation study of pulse width modulation schemes for three-phase impedance source inverter
2022
To avoid a short circuit of the input direct current (DC). source, a 3-phase inverter cannot run two switches in the same leg at a time, and it always operates in buck mode, with the output voltage being less than the input voltage. The Impedance source inverter features a feature that allows both switches in one leg to operate at the same time, and it can operate in buck/boost mode, which means the output voltage can be greater than the input voltage depending on the shoot-through time. In the literature, there are a few pulse width modulation (PWM) techniques for Impedance source inverter control. This research includes a simulation study as well as an examination of existing PWM schemes in the literature, as well as a proposal for TESVPWM for inverters. The inverter performance has evaluated using total harmonic distortion and fundamental components, validating by simulation findings.
Journal Article
Interference of Antinuclear Antibody (ANA) in Indirect Immunofluorescence Assay (IIFA)-Based Perinuclear Antineutrophil Cytoplasmic Antibody (pANCA) Interpretation
by
Gupta, Shailesh Kumar
,
Negi, Shailender
,
Deka, Sangeeta
in
Antibodies
,
Antigens
,
Antineutrophil cytoplasmic antibodies
2022
Background. Indirect immunofluorescence assay (IIFA) based on antineutrophil cytoplasmic antibody (ANCA) testing is a commonly employed test for diagnosing autoimmune vasculitis. Antinuclear antibody (ANA) can give rise to a false interpretation of perinuclear-ANCA (pANCA) in ethanol-fixed granulocyte substrates. Analytical interference could frequently occur in setups where ethanol-fixed substrates are used alone. Here, we intend to investigate this ANA interference in pANCA interpretation. Methods. In this retrospective study, we studied anti-MPO-negative but ANA-positive and pANCA (IIFA based) samples. We also correlated immunoblot results (where data were available) and checked the association between grades of blot positivity (an indicator of the concentration of ANA) and frequency of pANCA interpretation. Data were analyzed by appropriate statistical techniques (Chi-square and kappa statistics). Results. About 19.2% of ANA blot (ENA-blot) positive samples displayed a pANCA positive pattern in the ethanol-fixed substrate, while this positivity in ENA-blot negatives was 6.5%. In positive ANA-IIFA samples, about 14.7% yielded pANCA patterns (on ethanol fixed substrates). Out of this, nuclear homogenous pattern yielding samples gave the highest frequency pANCA, that is, in 31.5% followed by speckled (11.1%), DFS (10.3%), and centromere (6.7%).The association of the nuclear homogenous pattern was statistically significant. Conclusions. ANA-positive results may interfere with the interpretation of pANCA as observed in ANA-IIFA and ENA-blot positive samples. ANA-IIFA patterns like nuclear homogenous may strongly associate this pANCA interpretation. This can help laboratories perform ANCA testing more effectively, ruling out ANA interference in ANCA screening.
Journal Article
A highly efficient method to differentiate CGRP-expressing peptidergic nociceptors from human induced pluripotent stem cells
2025
Human cellular models of disease developed using induced pluripotent stem cells (iPSC) have enabled wide-ranging research from investigation of human disease mechanisms to phenotypic drug screens. Pain disorders such as neuropathic pain and headache remain areas of considerable unmet need and are considered high risk by pharma. Human iPSC-derived sensory neurons have already been used to accelerate translational research but the current differentiation protocols produce non-peptidergic nociceptors. We demonstrate for the first time the robust differentiation of hiPSC into peptidergic nociceptor lineage with high yield. These nociceptors express CGRP and TRPV1 whilst the non-peptidergic marker RET was completely absent. Functionally, the nociceptors show functional maturity including the expression of TTX-resistant currents and responding to TRPV1 and TRPA1 agonists. Importantly, they were able to release CGRP basally and upon stimulation by an inflammatory soup, which was inhibited upon the application of the 5-HT1B/1D/1F agonist, sumatriptan and topiramate, a migraine prophylactic drug. Overall, we report the successful generation of a novel in vitro functional peptidergic nociceptor model which will allow investigation of disease mechanisms in pain and for the development of new effective pain therapies.