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"Gustafsson, Fredrik"
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A Tutorial on Auditory Attention Identification Methods
Auditory attention identification methods attempt to identify the sound source of a listener's interest by analyzing measurements of electrophysiological data. We present a tutorial on the numerous techniques that have been developed in recent decades, and we present an overview of current trends in multivariate correlation-based and model-based learning frameworks. The focus is on the use of linear relations between electrophysiological and audio data. The way in which these relations are computed differs. For example, canonical correlation analysis (CCA) finds a linear subset of electrophysiological data that best correlates to audio data and a similar subset of audio data that best correlates to electrophysiological data. Model-based (encoding and decoding) approaches focus on either of these two sets. We investigate the similarities and differences between these linear model philosophies. We focus on (1) correlation-based approaches (CCA), (2) encoding/decoding models based on dense estimation, and (3) (adaptive) encoding/decoding models based on sparse estimation. The specific focus is on sparsity-driven adaptive encoding models and comparing the methodology in state-of-the-art models found in the auditory literature. Furthermore, we outline the main signal processing pipeline for how to identify the attended sound source in a cocktail party environment from the raw electrophysiological data with all the necessary steps, complemented with the necessary MATLAB code and the relevant references for each step. Our main aim is to compare the methodology of the available methods, and provide numerical illustrations to some of them to get a feeling for their potential. A thorough performance comparison is outside the scope of this tutorial.
Journal Article
The Ensemble Kalman filter: a signal processing perspective
The ensemble Kalman filter (EnKF) is a Monte Carlo-based implementation of the Kalman filter (KF) for extremely high-dimensional, possibly nonlinear, and non-Gaussian state estimation problems. Its ability to handle state dimensions in the order of millions has made the EnKF a popular algorithm in different geoscientific disciplines. Despite a similarly vital need for scalable algorithms in signal processing, e.g., to make sense of the ever increasing amount of sensor data, the EnKF is hardly discussed in our field.
This self-contained review is aimed at signal processing researchers and provides all the knowledge to get started with the EnKF. The algorithm is derived in a KF framework, without the often encountered geoscientific terminology. Algorithmic challenges and required extensions of the EnKF are provided, as well as relations to sigma point KF and particle filters. The relevant EnKF literature is summarized in an extensive survey and unique simulation examples, including popular benchmark problems, complement the theory with practical insights. The signal processing perspective highlights new directions of research and facilitates the exchange of potentially beneficial ideas, both for the EnKF and high-dimensional nonlinear and non-Gaussian filtering in general.
Journal Article
Evaluating regression and probabilistic methods for ECG-based electrolyte prediction
Imbalances in electrolyte concentrations can have severe consequences, but accurate and accessible measurements could improve patient outcomes. The current measurement method based on blood tests is accurate but invasive and time-consuming and is often unavailable for example in remote locations or an ambulance setting. In this paper, we explore the use of deep neural networks (DNNs) for regression tasks to accurately predict continuous electrolyte concentrations from electrocardiograms (ECGs), a quick and widely adopted tool. We analyze our DNN models on a novel dataset of over 290,000 ECGs across four major electrolytes and compare their performance with traditional machine learning models. For improved understanding, we also study the full spectrum from continuous predictions to a binary classification of extreme concentration levels. Finally, we investigate probabilistic regression approaches and explore uncertainty estimates for enhanced clinical usefulness. Our results show that DNNs outperform traditional models but model performance varies significantly across different electrolytes. While discretization leads to good classification performance, it does not address the original problem of continuous concentration level prediction. Probabilistic regression has practical potential, but our uncertainty estimates are not perfectly calibrated. Our study is therefore a first step towards developing an accurate and reliable ECG-based method for electrolyte concentration level prediction—a method with high potential impact within multiple clinical scenarios.
Journal Article
GRASIAN: towards the first demonstration of gravitational quantum states of atoms with a cryogenic hydrogen beam
At very low energies, a light neutral particle above a horizontal surface can experience quantum reflection. The quantum reflection holds the particle against gravity and leads to gravitational quantum states (
gqs
). So far,
gqs
were only observed with neutrons as pioneered by Nesvizhevsky and his collaborators at
ill
. However, the existence of
gqs
is predicted also for atoms. The
Grasian
collaboration pursues the first observation and studies of
gqs
of atomic hydrogen. We propose to use atoms in order to exploit the fact that orders of magnitude larger fluxes compared to those of neutrons are available. Moreover, recently the
q
-
Bounce
collaboration, performing
gqs
spectroscopy with neutrons, reported a discrepancy between theoretical calculations and experiment which deserves further investigations. For this purpose, we set up a cryogenic hydrogen beam at 6
K
. We report on our preliminary results, characterizing the hydrogen beam with pulsed laser ionization diagnostics at 243
nm
.
Graphical abstract
Journal Article
Estimating the SARS-CoV-2 infected population fraction and the infection-to-fatality ratio: a data-driven case study based on Swedish time series data
We demonstrate that finite impulse response (FIR) models can be applied to analyze the time evolution of an epidemic with its impact on deaths and healthcare strain. Using time series data for COVID-19-related cases, ICU admissions and deaths from Sweden, the FIR model gives a consistent epidemiological trajectory for a simple delta filter function. This results in a consistent scaling between the time series if appropriate time delays are applied and allows the reconstruction of cases for times before July 2020, when RT-PCR testing was not widely available. Combined with randomized RT-PCR study results, we utilize this approach to estimate the total number of infections in Sweden, and the corresponding infection-to-fatality ratio (IFR), infection-to-case ratio (ICR), and infection-to-ICU admission ratio (IIAR). Our values for IFR, ICR and IIAR are essentially constant over large parts of 2020 in contrast with claims of healthcare adaptation or mutated virus variants importantly affecting these ratios. We observe a diminished IFR in late summer 2020 as well as a strong decline during 2021, following the launch of a nation-wide vaccination program. The total number of infections during 2020 is estimated to 1.3 million, indicating that Sweden was far from herd immunity.
Journal Article
Antiprotonic Atoms as Gateways to HCI
The present study investigates the production of highly charged ions (HCIs) through the novel application of antiprotonic atoms and explores their potential for studying atomic and nuclear structures. Utilizing the Geant4 simulation toolkit, comprehensive simulations were conducted for all known isotopes with atomic numbers below 100. These simulations recorded key parameters of the resulting nuclear fragments, including mass, momentum, charge, and yield. The results obtained from this study offer valuable insights into the mechanisms of HCI production and provide a foundation for planning and analyzing future experimental investigations. This work demonstrates the feasibility of using antiprotonic atoms to advance nuclear and atomic physics research.
Journal Article
Nowcasting (Short-Term Forecasting) of COVID-19 Hospitalizations Using Syndromic Healthcare Data, Sweden, 2020
We report on local nowcasting (short-term forecasting) of coronavirus disease (COVID-19) hospitalizations based on syndromic (symptom) data recorded in regular healthcare routines in Östergötland County (population ≈465,000), Sweden, early in the pandemic, when broad laboratory testing was unavailable. Daily nowcasts were supplied to the local healthcare management based on analyses of the time lag between telenursing calls with the chief complaints (cough by adult or fever by adult) and COVID-19 hospitalization. The complaint cough by adult showed satisfactory performance (Pearson correlation coefficient r>0.80; mean absolute percentage error <20%) in nowcasting the incidence of daily COVID-19 hospitalizations 14 days in advance until the incidence decreased to <1.5/100,000 population, whereas the corresponding performance for fever by adult was unsatisfactory. Our results support local nowcasting of hospitalizations on the basis of symptom data recorded in routine healthcare during the initial stage of a pandemic.
Journal Article
Particle Filtering: The Need for Speed
The
particle filter
(PF) has during the last decade been proposed for a wide range of localization and tracking applications. There is a general need in such embedded system to have a platform for efficient and scalable implementation of the PF. One such platform is the
graphics processing unit
(GPU), originally aimed to be used for fast rendering of graphics. To achieve this, GPUs are equipped with a parallel architecture which can be exploited for
general-purpose computing
on GPU (GPGPU) as a complement to the central processing unit (CPU). In this paper, GPGPU techniques are used to make a parallel recursive Bayesian estimation implementation using particle filters. The modifications made to obtain a parallel particle filter, especially for the resampling step, are discussed and the performance of the resulting GPU implementation is compared to the one achieved with a traditional CPU implementation. The comparison is made using a minimal sensor network with bearings-only sensors. The resulting GPU filter, which is the first complete GPU implementation of a PF published to this date, is faster than the CPU filter when many particles are used, maintaining the same accuracy. The parallelization utilizes ideas that can be applicable for other applications.
Journal Article
Silent Localization of Underwater Sensors Using Magnetometers
Sensor localization is a central problem for sensor networks. If the sensor positions are uncertain, the target tracking ability of the sensor network is reduced. Sensor localization in underwater environments is traditionally addressed using acoustic range measurements involving known anchor or surface nodes. We explore the usage of triaxial magnetometers and a friendly vessel with known magnetic dipole to silently localize the sensors. The ferromagnetic field created by the dipole is measured by the magnetometers and is used to localize the sensors. The trajectory of the vessel and the sensor positions are estimated simultaneously using an Extended Kalman Filter (EKF). Simulations show that the sensors can be accurately positioned using magnetometers.
Journal Article